CX294930

Overview
NameCX294930
Unique NameCX294930
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length636
Libraries
Library NameType
PhIFruit1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX294930 vs. ExPASy Swiss-Prot
Match: AMFR_MOUSE (Autocrine motility factor receptor OS=Mus musculus GN=Amfr PE=1 SV=2)

HSP 1 Score: 87.0409 bits (214), Expect = 8.534e-17
Identity = 43/121 (35.54%), Postives = 68/121 (56.20%), Query Frame = 3
Query:  267 EWKGILIRNFGFFLDMATLLMALGHYIHIWWLRGMAFHLVDAILFLNIRALLSAIIKRIKGFIKLRIALGHLHAALPDATSEELRAYDDECAICREPMAKAKKLLCNHLFHLACLRSWLDQ 629
            E KG  +    F +++A L + L H+IH+     +   +   ++F+ +R L   + +RI+        +G++ A    AT EEL   +D+CAIC + M  A+KL C HLFH +CLRSWL+Q
Sbjct:  251 EGKGTYVYYTDFVMELALLSLDLMHHIHMLLFGNIWLSMASLVIFMQLRYLFHEVQRRIRRHKNYLRVVGNMEARFAVATPEELAVNNDDCAICWDSMQAARKLPCGHLFHNSCLRSWLEQ 371          
BLAST of CX294930 vs. ExPASy Swiss-Prot
Match: AMFR2_HUMAN (Autocrine motility factor receptor, isoform 2 OS=Homo sapiens GN=AMFR PE=1 SV=2)

HSP 1 Score: 85.5001 bits (210), Expect = 2.483e-16
Identity = 42/121 (34.71%), Postives = 67/121 (55.37%), Query Frame = 3
Query:  267 EWKGILIRNFGFFLDMATLLMALGHYIHIWWLRGMAFHLVDAILFLNIRALLSAIIKRIKGFIKLRIALGHLHAALPDATSEELRAYDDECAICREPMAKAKKLLCNHLFHLACLRSWLDQ 629
            E KG  +    F +++  L + L H+IH+     +   +   ++F+ +R L   + +RI+        +G++ A    AT EEL   +D+CAIC + M  A+KL C HLFH +CLRSWL+Q
Sbjct:  251 EGKGTYVYYTDFVMELTLLSLDLMHHIHMLLFGNIWLSMASLVIFMQLRYLFHEVQRRIRRHKNYLRVVGNMEARFAVATPEELAVNNDDCAICWDSMQAARKLPCGHLFHNSCLRSWLEQ 371          
BLAST of CX294930 vs. ExPASy Swiss-Prot
Match: SYVNB_XENLA (E3 ubiquitin-protein ligase synoviolin-B OS=Xenopus laevis GN=syvn1-B PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.102e-11
Identity = 31/66 (46.97%), Postives = 44/66 (66.67%), Query Frame = 3
Query:  435 KRIKGFIKLRIALGHLHAALPDATSEELRAYDDECAICREPMAK-AKKLLCNHLFHLACLRSWLDQ 629
            K +   +  R A+ +++   PDAT+EEL+A D+ C ICRE M   AK+L CNH+FH +CLRSW  +
Sbjct:  251 KAVTDAVMSRRAIRNMNTLYPDATAEELQAMDNVCIICREEMVSGAKRLPCNHIFHTSCLRSWFQR 316          
BLAST of CX294930 vs. ExPASy Swiss-Prot
Match: SYVNA_XENLA (E3 ubiquitin-protein ligase synoviolin-A OS=Xenopus laevis GN=syvn1-A PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.102e-11
Identity = 32/66 (48.48%), Postives = 44/66 (66.67%), Query Frame = 3
Query:  435 KRIKGFIKLRIALGHLHAALPDATSEELRAYDDECAICREPMAK-AKKLLCNHLFHLACLRSWLDQ 629
            K +   I  R A+ +++   PDAT+EEL+A D+ C ICRE M   AK+L CNH+FH +CLRSW  +
Sbjct:  251 KAVTDAIMSRRAIRNMNTLYPDATAEELQAMDNVCIICREEMVTGAKRLPCNHIFHTSCLRSWFQR 316          
BLAST of CX294930 vs. ExPASy Swiss-Prot
Match: SYVN1_MOUSE (E3 ubiquitin-protein ligase synoviolin OS=Mus musculus GN=Syvn1 PE=1 SV=3)

HSP 1 Score: 67.3958 bits (163), Expect = 6.997e-11
Identity = 32/66 (48.48%), Postives = 43/66 (65.15%), Query Frame = 3
Query:  435 KRIKGFIKLRIALGHLHAALPDATSEELRAYDDECAICREPMAK-AKKLLCNHLFHLACLRSWLDQ 629
            K +   I  R A+ +++   PDAT EEL+A D+ C ICRE M   AK+L CNH+FH +CLRSW  +
Sbjct:  257 KAVTDAIMSRRAIRNMNTLYPDATPEELQAVDNVCIICREEMVTGAKRLPCNHIFHTSCLRSWFQR 322          
BLAST of CX294930 vs. ExPASy Swiss-Prot
Match: SYVN1_HUMAN (E3 ubiquitin-protein ligase synoviolin OS=Homo sapiens GN=SYVN1 PE=1 SV=2)

HSP 1 Score: 67.3958 bits (163), Expect = 6.997e-11
Identity = 32/66 (48.48%), Postives = 43/66 (65.15%), Query Frame = 3
Query:  435 KRIKGFIKLRIALGHLHAALPDATSEELRAYDDECAICREPMAK-AKKLLCNHLFHLACLRSWLDQ 629
            K +   I  R A+ +++   PDAT EEL+A D+ C ICRE M   AK+L CNH+FH +CLRSW  +
Sbjct:  257 KAVTDAIMSRRAIRNMNTLYPDATPEELQAMDNVCIICREEMVTGAKRLPCNHIFHTSCLRSWFQR 322          
The following BLAST results are available for this feature:
BLAST of CX294930 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
AMFR_MOUSE8.534e-1735.54Autocrine motility factor receptor OS=Mus musculus... [more]
AMFR2_HUMAN2.483e-1634.71Autocrine motility factor receptor, isoform 2 OS=H... [more]
SYVNB_XENLA4.102e-1146.97E3 ubiquitin-protein ligase synoviolin-B OS=Xenopu... [more]
SYVNA_XENLA4.102e-1148.48E3 ubiquitin-protein ligase synoviolin-A OS=Xenopu... [more]
SYVN1_MOUSE6.997e-1148.48E3 ubiquitin-protein ligase synoviolin OS=Mus musc... [more]
SYVN1_HUMAN6.997e-1148.48E3 ubiquitin-protein ligase synoviolin OS=Homo sap... [more]
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Properties
Property NameValue
Genbank descriptionC05057F10SK PhIFruit1 Citrus clementina cDNA clone C05057F10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX294930 ID=CX294930; Name=CX294930; organism=Citrus clementina; type=EST; length=636bp
ATTTCCGTGTATTTTCAGCATTACTGTTTGTTCTTGCCGTTGACATTTTC
TGGATAAGGATGTGTCTGCTATTATTCAAAACACTGGATTCGTCTATGTT
CCTGTTGTTATTTTTTGAGCCTCTCAGTGTTGCTTTTGAGACAATGCAGG
CCATTTTGGTTCATGGGTTCCAGTTACTTGACATATGGCTGCACCATTCA
GCAGGGAACAGCACCAACTGTGCAAGATCAAAATTTTTTGACACGTTGGC
TGCAGGTTCATTGTTGGAATGGAAAGGCATTCTTATCCGGAATTTTGGAT
TCTTCCTGGACATGGCTACATTGCTGATGGCACTCGGTCATTATATACAT
ATTTGGTGGCTTCGTGGCATGGCATTCCATCTTGTTGATGCGATCCTTTT
CTTAAATATACGTGCCTTGCTAAGTGCAATCATAAAGCGCATAAAAGGAT
TCATCAAACTAAGAATAGCTTTAGGACACCTTCACGCTGCACTTCCTGAT
GCAACATCTGAAGAGCTACGTGCATACGATGATGAATGTGCTATCTGTCG
AGAGCCCATGGCAAAGGCTAAAAAGCTGCTCTGCAATCACCTTTTCCATC
TTGCATGCTTGAGATCTTGGTTGGATCAAGGTTTAA
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