CX295013

Overview
NameCX295013
Unique NameCX295013
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length712
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX295013 vs. ExPASy Swiss-Prot
Match: PITP1_DICDI (Phosphatidylinositol transfer protein 1 OS=Dictyostelium discoideum GN=pitA PE=1 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 2.949e-27
Identity = 60/139 (43.17%), Postives = 90/139 (64.75%), Query Frame = 2
Query:  296 SKAPAWLKTFAPADALVMHEEAWNSYPRCKTVIKCPYF-TKFSLTIETVHKADNGRSDNVHNLSEEQLAARQVEVLDIASTARDYWSYAIASNNVDFSKFKSKRTGRGPL-SEGWQDRCN-PVMTAYKLVTIDAPYWGF 703
            S+ P W++   P+ AL + E+AWN+YP CKTV+K P+   KF+  IE+ H  DN +++N+HNLSE++L  R VEV+DI    +D  +Y       D +K +S++  RGPL  E W++    P+MT YKLVT++  Y+GF
Sbjct:   65 SRLPGWIRALIPSSALKLEEKAWNAYPYCKTVLKSPFLGEKFTFIIESRHAQDNCKTENIHNLSEKELKERTVEVIDITKPIKDPKNY---KETEDPTKIRSEKANRGPLEEEKWRESTEMPIMTCYKLVTVEFKYFGF 200          
BLAST of CX295013 vs. ExPASy Swiss-Prot
Match: PITP4_DICDI (Phosphatidylinositol transfer protein 4 OS=Dictyostelium discoideum GN=pitD PE=3 SV=2)

HSP 1 Score: 108.612 bits (270), Expect = 3.375e-23
Identity = 61/145 (42.07%), Postives = 79/145 (54.48%), Query Frame = 2
Query:  284 FSVCSKAPAWLKTFAPADALVMHEEAWNSYPRCKTVIKCPYF-TKFSLTIETVHKADNGRSDNVHNLSEEQLAARQVEVLDIASTARDYWSYAIASNNVDFSKFKSKRTGRGPL-SEGWQDRCNPVMTAYKLVTIDAPYWGFGYR 712
            F +    P +     P  AL + E++WNSYP  KT+  CP+F  KF L IE++HK      +NV  LS++ L  R V+ +DI   ARD         + D   FKSK TGRGPL S  W+   NP M  YKLVT++  YWGF  R
Sbjct:   62 FLLKKSLPRYASAILPKSALKIEEKSWNSYPNTKTIYSCPFFGEKFYLCIESIHKDGRDEEENVFGLSKDILKKRIVDHVDI---ARDEVEGKDVKTDEDPRMFKSKLTGRGPLTSPNWRKEVNPAMVVYKLVTVNFNYWGFQNR 203          
BLAST of CX295013 vs. ExPASy Swiss-Prot
Match: RDGB_DROME (Protein retinal degeneration B OS=Drosophila melanogaster GN=rdgB PE=1 SV=2)

HSP 1 Score: 104.375 bits (259), Expect = 6.364e-22
Identity = 59/153 (38.56%), Postives = 77/153 (50.33%), Query Frame = 2
Query:  284 FSVCSKAPAWLKTFAPADALVMHEEAWNSYPRCKTVIKCPYFTKFSLTIETVHKADNGRSDNVHNLSEEQLAARQVEVLDIASTARDYWSYAIASNNVDFSKFKSKRTGRGPLSEGWQD--------------RCNPVMTAYKLVTIDAPYWG 700
            + V +  P W+K+  P  AL + EEAWN+YP  +T   CP+  KFSL IET +  DNG  DNV  LS   L  R V+V+DI         Y       D   F S +TGRGPL+E W +              R   +MTAYK+  ++  YWG
Sbjct:   63 YHVGNHLPGWIKSLLPKSALTVEEEAWNAYPYTRTRYTCPFVEKFSLDIETYYYPDNGYQDNVFQLSGSDLRNRIVDVIDIVKDQLWGGDYV---KEEDPKHFVSDKTGRGPLAEDWLEEYWREVKGKKQPTPRNMSLMTAYKICRVEFRYWG 212          
BLAST of CX295013 vs. ExPASy Swiss-Prot
Match: PITP3_DICDI (Phosphatidylinositol transfer protein 3 OS=Dictyostelium discoideum GN=pitC PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.086e-21
Identity = 54/140 (38.57%), Postives = 80/140 (57.14%), Query Frame = 2
Query:  284 FSVCSKAPAWLKTFAPADALVMHEEAWNSYPRCKTVIKCPYF-TKFSLTIETVHKADNGRSDNVHNLSEEQLAARQVEVLDIASTARDYWSYAIASNNVDFSKFKSKRTGRGPLSEGWQDRCNPVMTAYKLVTIDAPYWG 700
            F +  + P WL++FAP  +L + E+AWN+YP CKT   CP    +FS++IET ++ D+G  DN  NL+ E+L+ R+VE +DI +   D   Y       D   F+S +TGRG L   W     P+M  YK+  ++   WG
Sbjct:   62 FHLGGRLPTWLRSFAPT-SLQIEEKAWNAYPYCKTSYACPLLGDRFSVSIETRYEPDSGTQDNCLNLNSEELSIREVEHIDIVNDPIDEAHY---KPEEDPKIFQSVKTGRGKLQNDWMKSTKPIMCCYKVCKVEFRCWG 197          
BLAST of CX295013 vs. ExPASy Swiss-Prot
Match: PIPNA_RABIT (Phosphatidylinositol transfer protein alpha isoform OS=Oryctolagus cuniculus GN=PITPNA PE=3 SV=2)

HSP 1 Score: 102.064 bits (253), Expect = 3.158e-21
Identity = 62/145 (42.76%), Postives = 81/145 (55.86%), Query Frame = 2
Query:  296 SKAPAWLKTFAPADALVMHEEAWNSYPRCKTVIKCPYFTK-FSLTIETVHKADNGRSDNVHNLSEEQLAARQVEVLDIAS----TARDYWSYAIASNNVDFSKFKSKRTGRGPLSEGW-QDRCN----PVMTAYKLVTIDAPYWG 700
            SK P +++  AP  AL +HE+AWN+YP C+TVI   Y  + F + IET HK D G  +NVH L  E     +V  +DIA      ++DY          D +KFKS +TGRGPL   W Q+  N    P M AYKLVT+   +WG
Sbjct:   66 SKVPTFVRMLAPEGALNIHEKAWNAYPYCRTVITNEYMKEDFLIKIETWHKPDLGTQENVHKLEPETWKHVEVIYIDIADRSQVLSKDY------KAEEDPAKFKSIKTGRGPLGPNWKQELVNQKDCPYMCAYKLVTVKFKWWG 204          
BLAST of CX295013 vs. ExPASy Swiss-Prot
Match: PIPNA_MOUSE (Phosphatidylinositol transfer protein alpha isoform OS=Mus musculus GN=Pitpna PE=1 SV=2)

HSP 1 Score: 100.908 bits (250), Expect = 7.036e-21
Identity = 61/145 (42.07%), Postives = 80/145 (55.17%), Query Frame = 2
Query:  296 SKAPAWLKTFAPADALVMHEEAWNSYPRCKTVIKCPYFTK-FSLTIETVHKADNGRSDNVHNLSEEQLAARQVEVLDIAS----TARDYWSYAIASNNVDFSKFKSKRTGRGPLSEGW-QDRCN----PVMTAYKLVTIDAPYWG 700
            SK P +++  AP  AL +HE+AWN+YP C+TVI   Y  + F + IET HK D G  +NVH L  E     +   +DIA      ++DY          D +KFKS +TGRGPL   W Q+  N    P M AYKLVT+   +WG
Sbjct:   67 SKVPTFVRMLAPEGALNIHEKAWNAYPYCRTVITNEYMKEDFLIKIETWHKPDLGTQENVHKLEPEAWKHVEAIYIDIADRSQVLSKDY------KAEEDPAKFKSVKTGRGPLGPNWKQELVNQKDCPYMCAYKLVTVKFKWWG 205          
BLAST of CX295013 vs. ExPASy Swiss-Prot
Match: PIPNA_HUMAN (Phosphatidylinositol transfer protein alpha isoform OS=Homo sapiens GN=PITPNA PE=1 SV=2)

HSP 1 Score: 100.908 bits (250), Expect = 7.036e-21
Identity = 61/145 (42.07%), Postives = 80/145 (55.17%), Query Frame = 2
Query:  296 SKAPAWLKTFAPADALVMHEEAWNSYPRCKTVIKCPYFTK-FSLTIETVHKADNGRSDNVHNLSEEQLAARQVEVLDIAS----TARDYWSYAIASNNVDFSKFKSKRTGRGPLSEGW-QDRCN----PVMTAYKLVTIDAPYWG 700
            SK P +++  AP  AL +HE+AWN+YP C+TVI   Y  + F + IET HK D G  +NVH L  E     +   +DIA      ++DY          D +KFKS +TGRGPL   W Q+  N    P M AYKLVT+   +WG
Sbjct:   66 SKVPTFVRMLAPEGALNIHEKAWNAYPYCRTVITNEYMKEDFLIKIETWHKPDLGTQENVHKLEPEAWKHVEAVYIDIADRSQVLSKDY------KAEEDPAKFKSIKTGRGPLGPNWKQELVNQKDCPYMCAYKLVTVKFKWWG 204          
BLAST of CX295013 vs. ExPASy Swiss-Prot
Match: PIPNA_RAT (Phosphatidylinositol transfer protein alpha isoform OS=Rattus norvegicus GN=Pitpna PE=1 SV=2)

HSP 1 Score: 100.523 bits (249), Expect = 9.190e-21
Identity = 61/145 (42.07%), Postives = 80/145 (55.17%), Query Frame = 2
Query:  296 SKAPAWLKTFAPADALVMHEEAWNSYPRCKTVIKCPYFTK-FSLTIETVHKADNGRSDNVHNLSEEQLAARQVEVLDIAS----TARDYWSYAIASNNVDFSKFKSKRTGRGPLSEGW-QDRCN----PVMTAYKLVTIDAPYWG 700
            SK P +++  AP  AL +HE+AWN+YP C+TVI   Y  + F + IET HK D G  +NVH L  E     +   +DIA      ++DY          D +KFKS +TGRGPL   W Q+  N    P M AYKLVT+   +WG
Sbjct:   67 SKVPTFVRMLAPEGALNIHEKAWNAYPYCRTVITNEYMKEDFLIKIETWHKPDLGTQENVHKLEPEAWKHVEAIYIDIADRSQVLSKDY------KAEEDPAKFKSIKTGRGPLGPNWKQELVNQKDCPYMCAYKLVTVKFKWWG 205          
BLAST of CX295013 vs. ExPASy Swiss-Prot
Match: PIPNA_BOVIN (Phosphatidylinositol transfer protein alpha isoform OS=Bos taurus GN=PITPNA PE=1 SV=3)

HSP 1 Score: 100.138 bits (248), Expect = 1.200e-20
Identity = 61/145 (42.07%), Postives = 81/145 (55.86%), Query Frame = 2
Query:  296 SKAPAWLKTFAPADALVMHEEAWNSYPRCKTVIKCPYFTK-FSLTIETVHKADNGRSDNVHNLSEEQLAARQVEVLDIAS----TARDYWSYAIASNNVDFSKFKSKRTGRGPLSEGW-QDRCN----PVMTAYKLVTIDAPYWG 700
            SK P +++  AP  AL +HE+AWN+YP C+TVI   Y  + F + IET HK D G  +NVH L  E     +V  +DIA      ++DY          D +K+KS +TGRGPL   W Q+  N    P M AYKLVT+   +WG
Sbjct:   66 SKVPTFVRMLAPEGALNIHEKAWNAYPYCRTVITNEYMKEDFLIKIETWHKPDLGTLENVHKLEPEAWKHVEVIYIDIADRSQVLSKDY------KAEEDPAKYKSIKTGRGPLGPNWKQELVNQKDCPYMCAYKLVTVKFKWWG 204          
BLAST of CX295013 vs. ExPASy Swiss-Prot
Match: PITM1_MOUSE (Membrane-associated phosphatidylinositol transfer protein 1 OS=Mus musculus GN=Pitpnm1 PE=1 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.568e-20
Identity = 53/142 (37.32%), Postives = 75/142 (52.82%), Query Frame = 2
Query:  284 FSVCSKAPAWLKTFAPADALVMHEEAWNSYPRCKTVIKCPYFTKFSLTIETVHKADNGRSDNVHNLSEEQLAARQVEVLDIASTARDYWSYAIASNNVDFSKFKSKRTGRGPLSEGW---QDRCNPVMTAYKLVTIDAPYWG 700
            + V S  P W +   P  AL + EE+WN+YP  +T   CP+  KFS+ IET +  D G+  NV NLS  +   R V+ +DI   A     Y       D   ++S +TGRGPL++ W     +  P+M AYKL  ++  YWG
Sbjct:   63 YHVGSHIPGWFRALLPKAALQVEEESWNAYPYTRTRYTCPFVEKFSIEIETYYLPDGGQQPNVFNLSGAERRQRIVDTIDIVRDAVAPGEYKAEE---DPRLYRSAKTGRGPLADDWARTAAQTGPLMCAYKLCKVEFRYWG 201          
The following BLAST results are available for this feature:
BLAST of CX295013 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 24
Match NameE-valueIdentityDescription
PITP1_DICDI2.949e-2743.17Phosphatidylinositol transfer protein 1 OS=Dictyos... [more]
PITP4_DICDI3.375e-2342.07Phosphatidylinositol transfer protein 4 OS=Dictyos... [more]
RDGB_DROME6.364e-2238.56Protein retinal degeneration B OS=Drosophila melan... [more]
PITP3_DICDI1.086e-2138.57Phosphatidylinositol transfer protein 3 OS=Dictyos... [more]
PIPNA_RABIT3.158e-2142.76Phosphatidylinositol transfer protein alpha isofor... [more]
PIPNA_MOUSE7.036e-2142.07Phosphatidylinositol transfer protein alpha isofor... [more]
PIPNA_HUMAN7.036e-2142.07Phosphatidylinositol transfer protein alpha isofor... [more]
PIPNA_RAT9.190e-2142.07Phosphatidylinositol transfer protein alpha isofor... [more]
PIPNA_BOVIN1.200e-2042.07Phosphatidylinositol transfer protein alpha isofor... [more]
PITM1_MOUSE1.568e-2037.32Membrane-associated phosphatidylinositol transfer ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC05065F06SK DroRLeaf1 Citrus clementina cDNA clone C05065F06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295013 ID=CX295013; Name=CX295013; organism=Citrus clementina; type=EST; length=712bp
TGTATTTGGAAGAGGTCAATACACTTTTAAAGTGTATCGTTTCCAAAGGT
AATTCAATGAATCAGAAATAATCTTAATCTGCTAAAGTTTAGTTGTTTTT
ATTATTTGATGATTGGTTCTACCAGATTATGAGCTTACTATAGTCTATTT
TAGTCTCGCTACTATTTATATATGGGTTTAGAAAAAGGAGTTGCAAATTT
TATTTGGTCAGTATAAGTTTATTACCAGCTGCATTGCAGATAGAAGATTT
CAAAATTGGGGGTTATGATTGCCTAACATTACATTTTCTGTTTGTAGTAA
AGCTCCTGCTTGGCTTAAAACTTTTGCGCCAGCAGATGCTCTTGTAATGC
ACGAGGAAGCCTGGAATTCATATCCAAGATGCAAAACAGTAATCAAGTGC
CCGTATTTCACCAAATTCAGTCTCACCATTGAAACTGTTCATAAAGCTGA
CAATGGGCGGTCAGACAATGTGCATAACTTGAGCGAAGAACAACTAGCAG
CCAGACAGGTTGAAGTTCTTGATATTGCTTCAACTGCAAGGGATTATTGG
AGCTATGCCATTGCTAGTAACAACGTAGACTTCTCTAAATTCAAATCAAA
GAGAACTGGACGTGGTCCACTTTCAGAGGGCTGGCAGGATAGGTGCAATC
CTGTTATGACAGCATATAAATTGGTGACTATAGATGCACCATACTGGGGA
TTTGGTTATCGA
back to top