CX295015

Overview
NameCX295015
Unique NameCX295015
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length683
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX295015 vs. ExPASy Swiss-Prot
Match: SPL14_ARATH (Squamosa promoter-binding-like protein 14 OS=Arabidopsis thaliana GN=SPL14 PE=2 SV=3)

HSP 1 Score: 264.233 bits (674), Expect = 4.473e-70
Identity = 134/213 (62.91%), Postives = 170/213 (79.81%), Query Frame = 2
Query:    5 PRSREEVLHFLNELGWLFQRKRASSIVKGSDYSLSRFKFLLVFSVDRGCCALVKAILDILVEGNLSMDGLSRESLEMLWEIQLLNRAVKMKCRRMVDLLIHYSLTSSN-DTPQKYIFPPNLAGPGGITPLHLAACTSDSDDIIDALTNDPQEIGPSSWNSILDASGHSPYSYALMKNNHAYNKLVARKLADRRNGQVTIPAGVE-IEQSGLAK 637
            P SREEVL FLNELGWLFQ+ + S + + SD+SL+RFKFLLV SV+R  CAL++ +LD+LVE NL  D L+RE+L+ML EIQLLNRAVK K  +MV+LLIHY +      + +K++F PN+ GPGGITPLHLAACTS SDD+ID LTNDPQEIG SSWN++ DA+G +PYSYA ++NNH YN LVARKLAD+RN QV++    E ++Q+GL+K
Sbjct:  745 PTSREEVLCFLNELGWLFQKNQTSELREQSDFSLARFKFLLVCSVERDYCALIRTLLDMLVERNLVNDELNREALDMLAEIQLLNRAVKRKSTKMVELLIHYLVNPLTLSSSRKFVFLPNITGPGGITPLHLAACTSGSDDMIDLLTNDPQEIGLSSWNTLRDATGQTPYSYAAIRNNHNYNSLVARKLADKRNKQVSLNIEHEVVDQTGLSK 957          
BLAST of CX295015 vs. ExPASy Swiss-Prot
Match: SPL16_ARATH (Squamosa promoter-binding-like protein 16 OS=Arabidopsis thaliana GN=SPL16 PE=2 SV=2)

HSP 1 Score: 262.307 bits (669), Expect = 1.700e-69
Identity = 136/228 (59.65%), Postives = 176/228 (77.19%), Query Frame = 2
Query:    2 RPRSREEVLHFLNELGWLFQRKRASSIVKGSDYSLSRFKFLLVFSVDRGCCALVKAILDILVEGNLSMDGL-SRESLEMLWEIQLLNRAVKMKCRRMVDLLIHYSLTSSNDTPQKYIFPPNLAGPGGITPLHLAACTSDSDDIIDALTNDPQEIGPSSWNSILDASGHSPYSYALMKNNHAYNKLVARKLADRRNGQVTIPAGVEIEQSGLAKEQVHGLSSQFKQGVN 682
            RPRSREEVL FLNELGWLFQRK  S I    D+SL RFKFLLV SV+R  C+L++ +LD++VE NL  DGL ++ESL+ML +IQLLNRA+K +  +M + LIHYS+   N + + +IF P++AGPG ITPLHLAA TS SDD+IDALTNDPQEIG S WN+++DA+G +P+SYA M++NH+YN LVARKLAD+RNGQ+++     I+Q GL+K     LSS+ K+  N
Sbjct:  704 RPRSREEVLCFLNELGWLFQRKWTSDIHGEPDFSLPRFKFLLVCSVERDYCSLIRTVLDMMVERNLGKDGLLNKESLDMLADIQLLNRAIKRRNTKMAETLIHYSV---NPSTRNFIFLPSIAGPGDITPLHLAASTSSSDDMIDALTNDPQEIGLSCWNTLVDATGQTPFSYAAMRDNHSYNTLVARKLADKRNGQISLNIENGIDQIGLSKR----LSSELKRSCN 924          
BLAST of CX295015 vs. ExPASy Swiss-Prot
Match: SPL15_ORYSJ (Squamosa promoter-binding-like protein 15 OS=Oryza sativa subsp. japonica GN=SPL15 PE=2 SV=1)

HSP 1 Score: 219.55 bits (558), Expect = 1.263e-56
Identity = 116/225 (51.56%), Postives = 160/225 (71.11%), Query Frame = 2
Query:    2 RPRSREEVLHFLNELGWLFQRKRASSIVKGSD--------YSLSRFKFLLVFSVDRGCCALVKAILDILVEGNLSMDGLSRESLEMLWEIQLLNRAVKMKCRRMVDLLIHYSLTSSNDTPQKYIFPPNLAGPGGITPLHLAACTSDSDDIIDALTNDPQEIGPSSWNSILDASGHSPYSYALMKNNHAYNKLVARKLADRRNGQVTIPAG---VEIEQSGLAKEQ 643
            R + ++EVLHFLNELGWLFQ+  AS+  + SD        +S +RF++LL+FS +R  C+L K +L+IL + +L+ D LS+E+LEML EI LLNRAVK K   M  LL+ + +   +D+ + Y F PN+AGPGG+TPLHLAA   D+ DI+DALT+DPQ+IG S W+S LD  G SP +YA ++NN+AYN+LVA+KL DR+N QVTI  G   + ++QSG   E+
Sbjct:  839 RLKPKDEVLHFLNELGWLFQKAAASTSAEKSDSSGLDLMYFSTARFRYLLLFSSERDWCSLTKTLLEILAKRSLASDELSQETLEMLSEIHLLNRAVKRKSSHMARLLVQFVVVCPDDS-KLYPFLPNVAGPGGLTPLHLAASIEDAVDIVDALTDDPQQIGLSCWHSALDDDGQSPETYAKLRNNNAYNELVAQKLVDRKNNQVTIMVGKEEIHMDQSGNVGEK 1062          
BLAST of CX295015 vs. ExPASy Swiss-Prot
Match: SPL15_ORYSI (Squamosa promoter-binding-like protein 15 OS=Oryza sativa subsp. indica GN=SPL15 PE=2 SV=1)

HSP 1 Score: 219.55 bits (558), Expect = 1.263e-56
Identity = 116/225 (51.56%), Postives = 160/225 (71.11%), Query Frame = 2
Query:    2 RPRSREEVLHFLNELGWLFQRKRASSIVKGSD--------YSLSRFKFLLVFSVDRGCCALVKAILDILVEGNLSMDGLSRESLEMLWEIQLLNRAVKMKCRRMVDLLIHYSLTSSNDTPQKYIFPPNLAGPGGITPLHLAACTSDSDDIIDALTNDPQEIGPSSWNSILDASGHSPYSYALMKNNHAYNKLVARKLADRRNGQVTIPAG---VEIEQSGLAKEQ 643
            R + ++EVLHFLNELGWLFQ+  AS+  + SD        +S +RF++LL+FS +R  C+L K +L+IL + +L+ D LS+E+LEML EI LLNRAVK K   M  LL+ + +   +D+ + Y F PN+AGPGG+TPLHLAA   D+ DI+DALT+DPQ+IG S W+S LD  G SP +YA ++NN+AYN+LVA+KL DR+N QVTI  G   + ++QSG   E+
Sbjct:  839 RLKPKDEVLHFLNELGWLFQKAAASTSAEKSDSSGLDLMYFSTARFRYLLLFSSERDWCSLTKTLLEILAKRSLASDELSQETLEMLSEIHLLNRAVKRKSSHMARLLVQFVVVCPDDS-KLYPFLPNVAGPGGLTPLHLAASIEDAVDIVDALTDDPQQIGLSCWHSALDDDGQSPETYAKLRNNNAYNELVAQKLVDRKNNQVTIMVGKEEIHMDQSGNVGEK 1062          
BLAST of CX295015 vs. ExPASy Swiss-Prot
Match: SPL1_ORYSJ (Squamosa promoter-binding-like protein 1 OS=Oryza sativa subsp. japonica GN=SPL1 PE=2 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 6.981e-31
Identity = 72/200 (36.00%), Postives = 123/200 (61.50%), Query Frame = 2
Query:   11 SREEVLHFLNELGWLFQRK--RASSIVKGS---DYSLSRFKFLLVFSVDRGCCALVKAILDILVEGNLSMDGLSRESLEMLWEIQLLNRAVKMKCRRMVDLLIHYSLTSS------NDTPQKYIFPPNLAGPGGITPLHLAACTSDSDDIIDALTNDPQEIGPSSWNSILDASGHSPYSYALMKNNHAYNKLVARKLADR 577
            SR+  L+FL+E GW  QR   RA+S         +  +RF++LL F+VDR  CA++K +LD L +G + +D  S  ++E + +  L+  AV  + + ++D L+ Y+ +S+      +  P +++F P++AGP  ITPLH+AA  SD+  ++DALT+DPQ++G  +W +  DA+G +P  YA  + + +Y ++V  K+  R
Sbjct:  551 SRDRALNFLHEFGWFLQRSHIRATSETPKDCTEGFPAARFRWLLSFAVDREFCAVIKKLLDTLFQGGVDLDVQS--TVEFVLKQDLVFVAVNKRSKPLIDFLLTYTTSSAPMDGTESAAPAQFLFTPDIAGPSDITPLHIAATYSDTAGVLDALTDDPQQLGIKAWKNARDATGLTPEDYARKRGHESYIEMVQNKIDSR 748          
BLAST of CX295015 vs. ExPASy Swiss-Prot
Match: SPL12_ARATH (Squamosa promoter-binding-like protein 12 OS=Arabidopsis thaliana GN=SPL12 PE=1 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 2.031e-30
Identity = 82/231 (35.50%), Postives = 127/231 (54.98%), Query Frame = 2
Query:   11 SREEVLHFLNELGWLFQRKRASSIVKGSD------YSLSRFKFLLVFSVDRGCCALVKAILDILVEGNLSMDGLSRESLEMLWEIQLLNRAVKMKCRRMVDLLIHYSLTSSNDTPQKYIFPPNLAGPGGITPLHLAACTSDSDDIIDALTNDPQEIGPSSWNSILDASGHSPYSYALMKNNHAYNKLVARKLA----DRRNGQVTIPAGVEIEQSGLAKEQVHGLSSQFKQ 673
            S  + + F++E+GWL  R    S +  SD      +SL RFKFL+ FS+DR  C ++K +L+IL E   ++D     +L    E+ LL+RAV+   + MV++L+ +S    N T    +F P+ AGPGG+TPLH+AA    S+D++DALT DP   G  +W +  D +G +P  YA ++ + +Y  LV RKL+     + +  V IP    IE     +  +   S +  Q
Sbjct:  635 SAMQAMDFIHEIGWLLHRSELKSRLAASDHNPEDLFSLIRFKFLIEFSMDREWCCVMKKLLNILFEEG-TVDPSPDAALS---ELCLLHRAVRKNSKPMVEMLLRFSPKKKNQTLAG-LFRPDAAGPGGLTPLHIAAGKDGSEDVLDALTEDPGMTGIQAWKNSRDNTGFTPEDYARLRGHFSYIHLVQRKLSRKPIAKEHVVVNIPESFNIEHKQEKRSPMDSSSLEITQ 860          
BLAST of CX295015 vs. ExPASy Swiss-Prot
Match: SPL6_ORYSJ (Squamosa promoter-binding-like protein 6 OS=Oryza sativa subsp. japonica GN=SPL6 PE=2 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 2.653e-30
Identity = 72/190 (37.89%), Postives = 112/190 (58.95%), Query Frame = 2
Query:   11 SREEVLHFLNELGWLFQRKRASSI---VKGSDYSLSRFKFLLVFSVDRGCCALVKAILDILVEGNLSMDGLSRESLEMLWEIQLLNRAVKMKCRRMVDLLIHYSLTSS-NDTPQKYIFPPNLAGPGGITPLHLAACTSDSDDIIDALTNDPQEIGPSSWNSILDASGHSPYSYALMKNNHAYNKLVARKL 568
            +R + L FLNELGWL  R    S    V  + +++ RF+ L +F+++R  CA+ K +LD L  G + +   S E  E++    LL+ AV+MK  +MV  L+ Y    S   T + ++F P+  GP   TPLH+AA T D++D++DALTNDP  +G ++W +  D +G +P  YA  + N AY  +V +K+
Sbjct:  674 ARNQALEFLNELGWLLHRANIISKQDKVPLASFNIWRFRNLGIFAMEREWCAVTKLLLDFLFTGLVDIGSQSPE--EVVLSENLLHAAVRMKSAQMVRFLLGYKPNESLKRTAETFLFRPDAQGPSKFTPLHIAAATDDAEDVLDALTNDPGLVGINTWRNARDGAGFTPEDYARQRGNDAYLNMVEKKI 861          
BLAST of CX295015 vs. ExPASy Swiss-Prot
Match: SPL1_ARATH (Squamosa promoter-binding-like protein 1 OS=Arabidopsis thaliana GN=SPL1 PE=1 SV=2)

HSP 1 Score: 124.405 bits (311), Expect = 5.531e-28
Identity = 65/187 (34.76%), Postives = 113/187 (60.43%), Query Frame = 2
Query:   11 SREEVLHFLNELGWLFQR-KRASSIVKGSDYSLSRFKFLLVFSVDRGCCALVKAILDILVEGNLSMDGLSRESLEMLWEIQLLNRAVKMKCRRMVDLLIHYSLTSSNDTPQKYIFPPNLAGPGGITPLHLAACTSDSDDIIDALTNDPQEIGPSSWNSILDASGHSPYSYALMKNNHAYNKLVARKL 568
            S ++ + F++E+GWL  R K   S      + L RF++L+ FS+DR  CA+++ +L++  +G  ++   S  S   L E+ LL+RAV+   + MV++L+ Y      ++    +F P+ AGP G+TPLH+AA    S+D++DALT DP  +G  +W +  D++G +P  YA ++ + +Y  L+ RK+
Sbjct:  597 SAKQAMDFIHEIGWLLHRSKLGESDPNPGVFPLIRFQWLIEFSMDREWCAVIRKLLNMFFDG--AVGEFSSSSNATLSELCLLHRAVRKNSKPMVEMLLRYIPKQQRNS----LFRPDAAGPAGLTPLHIAAGKDGSEDVLDALTEDPAMVGIEAWKTCRDSTGFTPEDYARLRGHFSYIHLIQRKI 777          
The following BLAST results are available for this feature:
BLAST of CX295015 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
SPL14_ARATH4.473e-7062.91Squamosa promoter-binding-like protein 14 OS=Arabi... [more]
SPL16_ARATH1.700e-6959.65Squamosa promoter-binding-like protein 16 OS=Arabi... [more]
SPL15_ORYSJ1.263e-5651.56Squamosa promoter-binding-like protein 15 OS=Oryza... [more]
SPL15_ORYSI1.263e-5651.56Squamosa promoter-binding-like protein 15 OS=Oryza... [more]
SPL1_ORYSJ6.981e-3136.00Squamosa promoter-binding-like protein 1 OS=Oryza ... [more]
SPL12_ARATH2.031e-3035.50Squamosa promoter-binding-like protein 12 OS=Arabi... [more]
SPL6_ORYSJ2.653e-3037.89Squamosa promoter-binding-like protein 6 OS=Oryza ... [more]
SPL1_ARATH5.531e-2834.76Squamosa promoter-binding-like protein 1 OS=Arabid... [more]
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Properties
Property NameValue
Genbank descriptionC05065F08SK DroRLeaf1 Citrus clementina cDNA clone C05065F08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295015 ID=CX295015; Name=CX295015; organism=Citrus clementina; type=EST; length=683bp
CAGGCCCAGATCAAGGGAAGAAGTTCTGCACTTCTTGAATGAACTGGGAT
GGCTGTTCCAAAGAAAGAGAGCTTCTTCCATCGTTAAGGGTTCTGATTAT
TCCTTGAGCCGCTTCAAGTTTTTGCTCGTATTTTCAGTAGATCGAGGTTG
CTGTGCTTTAGTGAAAGCAATCCTAGACATTCTGGTGGAAGGAAATTTGA
GTATGGATGGTCTATCTAGGGAATCACTTGAGATGCTGTGGGAAATTCAG
CTGTTGAATCGGGCTGTGAAAATGAAGTGCAGGAGGATGGTCGACTTGCT
GATCCATTATTCTTTAACTAGCAGTAATGACACCCCCCAGAAATATATTT
TCCCACCAAATCTTGCGGGACCTGGTGGTATTACGCCACTACATTTGGCT
GCATGTACGTCGGATTCAGATGATATAATAGATGCTTTGACAAATGATCC
ACAGGAGATTGGGCCGTCCTCCTGGAATTCCATTCTTGATGCTAGTGGGC
ACTCTCCATATTCTTATGCCTTAATGAAGAATAATCACGCTTATAACAAG
CTGGTGGCTCGTAAACTTGCTGACAGAAGAAATGGTCAAGTTACAATACC
AGCTGGAGTAGAGATAGAGCAATCTGGCTTGGCAAAGGAGCAGGTACATG
GGTTAAGTTCCCAATTCAAACAAGGGGTAAATC
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