CX295048

Overview
NameCX295048
Unique NameCX295048
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length731
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX295048 vs. ExPASy Swiss-Prot
Match: TDT_ARATH (Tonoplast dicarboxylate transporter OS=Arabidopsis thaliana GN=TDT PE=2 SV=2)

HSP 1 Score: 282.722 bits (722), Expect = 1.369e-75
Identity = 149/227 (65.64%), Postives = 164/227 (72.25%), Query Frame = 1
Query:    7 ISLWMTRSITDDIPGWGALFNDRAGDGTASVSTLWSFVYHLRT*LNETCLIKLLDDF*LNY*YICIXXXXXXXXQI*VVMATLLFIIPSMKQKGEKLMDWNKCKKLPWNIILLLGAGFAIADGVRTSGLADDLSKALDFLEAAPYLAIAPIVCLISAIITEFTSNNATTTLVLPLLIQIAKTMHVHPLLLMVPGAIGAQFSFLLPTGTPSNIVGFTTGHIEIQDMIK 687
            + LWMTR+ITDDIPGWG +F  RAGDGT SV                                               +MATLLFIIPS  +KGEKLMDWNKCKKLPWNI+LLLGAGFAIADGVRTSGLA+ LSK L FLE APY AIAP VCLI+A ITEFTSNNATTTL++PLLI+IAK M +HPLLLMVPGAIGAQF+FLLPTGTPSN+VGFTTGHIEI+DMIK
Sbjct:  330 VVLWMTRNITDDIPGWGRIFAGRAGDGTVSV-----------------------------------------------MMATLLFIIPSNIKKGEKLMDWNKCKKLPWNIVLLLGAGFAIADGVRTSGLAEVLSKGLVFLETAPYWAIAPTVCLIAATITEFTSNNATTTLLVPLLIEIAKNMGIHPLLLMVPGAIGAQFAFLLPTGTPSNVVGFTTGHIEIKDMIK 509          
BLAST of CX295048 vs. ExPASy Swiss-Prot
Match: S13A3_MOUSE (Solute carrier family 13 member 3 OS=Mus musculus GN=Slc13a3 PE=2 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 7.866e-31
Identity = 67/164 (40.85%), Postives = 98/164 (59.76%), Query Frame = 1
Query:  238 VVMATLLFIIPSMK-------------QKGEKLMDWNKCKK-LPWNIILLLGAGFAIADGVRTSGLADDLSKALDFLEAAPYLAIAPIVCLISAIITEFTSNNATTTLVLPLLIQIAKTMHVHPLLLMVPGAIGAQFSFLLPTGTPSNIVGFTTGHIEIQDMIK 687
            V + T+LF  PS K              + E L+ W K ++ +PWNIILLLG GFA+A G   SGL+  +   L  LE  P L    ++ ++ A  TEF SN AT  + LP+L ++A  +HVHPL LM+PG +G  ++F+LP  TP N + F+TGH+ ++DM++
Sbjct:  381 VAIVTILFFFPSQKPSLKWWFDFKAPNSETEPLLSWKKAQETVPWNIILLLGGGFAMAKGCEESGLSAWIGGQLHPLEHVPPLLAVLLITVVIAFFTEFASNTATIIIFLPVLAELAIRLHVHPLYLMIPGTVGCSYAFMLPVSTPPNSIAFSTGHLLVKDMVR 544          
BLAST of CX295048 vs. ExPASy Swiss-Prot
Match: SDCS_STAS1 (Sodium-dependent dicarboxylate transporter sdcS OS=Staphylococcus saprophyticus subsp. saprophyticus (strain ATCC 15305 / DSM 20229) GN=sdcS PE=3 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 2.989e-30
Identity = 62/147 (42.18%), Postives = 96/147 (65.31%), Query Frame = 1
Query:  244 MATLLFIIPSM-KQKGEKLMDWNKCKKLPWNIILLLGAGFAIADGVRTSGLADDLSKALDFLEAAPYLAIAPIVCLISAIITEFTSNNATTTLVLPLLIQIAKTMHVHPLLLMVPGAIGAQFSFLLPTGTPSNIVGFTTGHIEIQDM 681
            ++ LLF+IP+  K+K ++++DW   K LPW +++L G G A+A G+  SGLA+ L + L  +E    L I  ++ +    +TE TSN AT T++LP+L  ++  ++VHPLLLMVP A+ A  +++LP GTP N + F TG I I+ M
Sbjct:  335 ISVLLFLIPAKNKEKHKRIIDWEVAKDLPWGVLILFGGGLALAKGISESGLANWLGEQLKLIEGVSPLVIVLVITIFVLFLTEITSNTATATMILPILATLSVAVNVHPLLLMVPAAMAANCAYMLPVGTPPNAIVFGTGKISIKKM 481          
BLAST of CX295048 vs. ExPASy Swiss-Prot
Match: S13A3_RAT (Solute carrier family 13 member 3 OS=Rattus norvegicus GN=Slc13a3 PE=2 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 3.904e-30
Identity = 66/164 (40.24%), Postives = 97/164 (59.15%), Query Frame = 1
Query:  238 VVMATLLFIIPSMK-------------QKGEKLMDWNKCKK-LPWNIILLLGAGFAIADGVRTSGLADDLSKALDFLEAAPYLAIAPIVCLISAIITEFTSNNATTTLVLPLLIQIAKTMHVHPLLLMVPGAIGAQFSFLLPTGTPSNIVGFTTGHIEIQDMIK 687
            V + T+LF  PS K              + E L+ W K ++ +PWNIILLLG GFA+A G   SGL+  +   L  LE  P L    ++ ++ A  TEF SN AT  + LP+L ++A  +HVHPL LM+PG +   ++F+LP  TP N + F+TGH+ ++DM++
Sbjct:  381 VAIVTILFFFPSQKPSLKWWFDFKAPNSETEPLLSWKKAQETVPWNIILLLGGGFAMAKGCEESGLSAWIGGQLHPLEHVPPLLAVLLITVVIAFFTEFASNTATIIIFLPVLAELAIRLHVHPLYLMIPGTVSCSYAFMLPVSTPPNSIAFSTGHLLVKDMVR 544          
BLAST of CX295048 vs. ExPASy Swiss-Prot
Match: S13A5_HUMAN (Solute carrier family 13 member 5 OS=Homo sapiens GN=SLC13A5 PE=1 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 8.697e-30
Identity = 69/167 (41.32%), Postives = 102/167 (61.08%), Query Frame = 1
Query:  238 VVMATLLFIIPSMKQKGE----------------KLMDWNKCK-KLPWNIILLLGAGFAIADGVRTSGLADDLSKALDFLEAAPYLAIAPIVCLISAIITEFTSNNATTTLVLPLLIQIAKTMHVHPLLLMVPGAIGAQFSFLLPTGTPSNIVGFTTGHIEIQDMIK 687
            + +ATLLFI+PS K K                   L+DW   + K+PW I+LLLG GFA+A G   SGL+  + K ++ L A P  AI  I+ L+ A+ TE TSN ATTTL LP+   +++++ ++PL +M+P  + A F+F+LP  TP N + FT GH+++ DM+K
Sbjct:  361 IFVATLLFIVPSQKPKFNFRSQTEEERKTPFYPPPLLDWKVTQEKVPWGIVLLLGGGFALAKGSEASGLSVWMGKQMEPLHAVPPAAITLILSLLVAVFTECTSNVATTTLFLPIFASMSRSIGLNPLYIMLPCTLSASFAFMLPVATPPNAIVFTYGHLKVADMVK 527          
BLAST of CX295048 vs. ExPASy Swiss-Prot
Match: S13A3_HUMAN (Solute carrier family 13 member 3 OS=Homo sapiens GN=SLC13A3 PE=2 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 2.142e-28
Identity = 64/164 (39.02%), Postives = 95/164 (57.93%), Query Frame = 1
Query:  238 VVMATLLFIIPSMKQ-------------KGEKLMDWNKCKK-LPWNIILLLGAGFAIADGVRTSGLADDLSKALDFLEAAPYLAIAPIVCLISAIITEFTSNNATTTLVLPLLIQIAKTMHVHPLLLMVPGAIGAQFSFLLPTGTPSNIVGFTTGHIEIQDMIK 687
            V + T+LF  PS +              + E L+ W K ++ +PWNIILLLG GFA+A G   SGL+  +   L  LE  P      ++ ++ A  TEF SN AT  + LP+L ++A  + VHPL LM+PG +G  F+F+LP  TP N + F +GH+ ++DM++
Sbjct:  383 VAIVTILFFFPSQRPSLKWWFDFKAPNTETEPLLTWKKAQETVPWNIILLLGGGFAMAKGCEESGLSVWIGGQLHPLENVPPALAVLLITVVIAFFTEFASNTATIIIFLPVLAELAIRLRVHPLYLMIPGTVGCSFAFMLPVSTPPNSIAFASGHLLVKDMVR 546          
BLAST of CX295048 vs. ExPASy Swiss-Prot
Match: SDCS_STAAR (Sodium-dependent dicarboxylate transporter sdcS OS=Staphylococcus aureus (strain MRSA252) GN=sdcS PE=3 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 1.389e-27
Identity = 59/149 (39.60%), Postives = 92/149 (61.74%), Query Frame = 1
Query:  238 VVMATLLFIIPSMK-QKGEKLMDWNKCKKLPWNIILLLGAGFAIADGVRTSGLADDLSKALDFLEAAPYLAIAPIVCLISAIITEFTSNNATTTLVLPLLIQIAKTMHVHPLLLMVPGAIGAQFSFLLPTGTPSNIVGFTTGHIEIQDM 681
            + ++ LLFIIP+   +K  +++DW   K+LPW +++L G G A+A G+  SGLA  L + L  L     + I  ++ +    +TE TSN AT T++LP+L  ++  + VHPLLLM P A+ A  +++LP GTP N + F +G I I+ M
Sbjct:  334 IFISILLFIIPAKNTEKHRRIIDWEVAKELPWGVLILFGGGLALAKGISESGLAKWLGEQLKSLNGVSPILIVIVITIFVLFLTEVTSNTATATMILPILATLSVAVGVHPLLLMAPAAMAANCAYMLPVGTPPNAIIFGSGKISIKQM 482          
BLAST of CX295048 vs. ExPASy Swiss-Prot
Match: SDCS_STAAN (Sodium-dependent dicarboxylate transporter sdcS OS=Staphylococcus aureus (strain N315) GN=sdcS PE=1 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 1.389e-27
Identity = 59/149 (39.60%), Postives = 92/149 (61.74%), Query Frame = 1
Query:  238 VVMATLLFIIPSMK-QKGEKLMDWNKCKKLPWNIILLLGAGFAIADGVRTSGLADDLSKALDFLEAAPYLAIAPIVCLISAIITEFTSNNATTTLVLPLLIQIAKTMHVHPLLLMVPGAIGAQFSFLLPTGTPSNIVGFTTGHIEIQDM 681
            + ++ LLFIIP+   +K  +++DW   K+LPW +++L G G A+A G+  SGLA  L + L  L     + I  ++ +    +TE TSN AT T++LP+L  ++  + VHPLLLM P A+ A  +++LP GTP N + F +G I I+ M
Sbjct:  334 IFISILLFIIPAKNTEKHRRIIDWEVAKELPWGVLILFGGGLALAKGISESGLAKWLGEQLKSLNGVSPILIVIVITIFVLFLTEVTSNTATATMILPILATLSVAVGVHPLLLMAPAAMAANCAYMLPVGTPPNAIIFGSGKISIKQM 482          
BLAST of CX295048 vs. ExPASy Swiss-Prot
Match: SDCS_STAAM (Sodium-dependent dicarboxylate transporter sdcS OS=Staphylococcus aureus (strain Mu50 / ATCC 700699) GN=sdcS PE=1 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 1.389e-27
Identity = 59/149 (39.60%), Postives = 92/149 (61.74%), Query Frame = 1
Query:  238 VVMATLLFIIPSMK-QKGEKLMDWNKCKKLPWNIILLLGAGFAIADGVRTSGLADDLSKALDFLEAAPYLAIAPIVCLISAIITEFTSNNATTTLVLPLLIQIAKTMHVHPLLLMVPGAIGAQFSFLLPTGTPSNIVGFTTGHIEIQDM 681
            + ++ LLFIIP+   +K  +++DW   K+LPW +++L G G A+A G+  SGLA  L + L  L     + I  ++ +    +TE TSN AT T++LP+L  ++  + VHPLLLM P A+ A  +++LP GTP N + F +G I I+ M
Sbjct:  334 IFISILLFIIPAKNTEKHRRIIDWEVAKELPWGVLILFGGGLALAKGISESGLAKWLGEQLKSLNGVSPILIVIVITIFVLFLTEVTSNTATATMILPILATLSVAVGVHPLLLMAPAAMAANCAYMLPVGTPPNAIIFGSGKISIKQM 482          
BLAST of CX295048 vs. ExPASy Swiss-Prot
Match: SDCS_STAAC (Sodium-dependent dicarboxylate transporter sdcS OS=Staphylococcus aureus (strain COL) GN=sdcS PE=3 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 1.389e-27
Identity = 59/149 (39.60%), Postives = 92/149 (61.74%), Query Frame = 1
Query:  238 VVMATLLFIIPSMK-QKGEKLMDWNKCKKLPWNIILLLGAGFAIADGVRTSGLADDLSKALDFLEAAPYLAIAPIVCLISAIITEFTSNNATTTLVLPLLIQIAKTMHVHPLLLMVPGAIGAQFSFLLPTGTPSNIVGFTTGHIEIQDM 681
            + ++ LLFIIP+   +K  +++DW   K+LPW +++L G G A+A G+  SGLA  L + L  L     + I  ++ +    +TE TSN AT T++LP+L  ++  + VHPLLLM P A+ A  +++LP GTP N + F +G I I+ M
Sbjct:  334 IFISILLFIIPAKNTEKHRRIIDWEVAKELPWGVLILFGGGLALAKGISESGLAKWLGEQLKSLNGVSPILIVIVITIFVLFLTEVTSNTATATMILPILATLSVAVGVHPLLLMAPAAMAANCAYMLPVGTPPNAIIFGSGKISIKQM 482          
The following BLAST results are available for this feature:
BLAST of CX295048 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 32
Match NameE-valueIdentityDescription
TDT_ARATH1.369e-7565.64Tonoplast dicarboxylate transporter OS=Arabidopsis... [more]
S13A3_MOUSE7.866e-3140.85Solute carrier family 13 member 3 OS=Mus musculus ... [more]
SDCS_STAS12.989e-3042.18Sodium-dependent dicarboxylate transporter sdcS OS... [more]
S13A3_RAT3.904e-3040.24Solute carrier family 13 member 3 OS=Rattus norveg... [more]
S13A5_HUMAN8.697e-3041.32Solute carrier family 13 member 5 OS=Homo sapiens ... [more]
S13A3_HUMAN2.142e-2839.02Solute carrier family 13 member 3 OS=Homo sapiens ... [more]
SDCS_STAAR1.389e-2739.60Sodium-dependent dicarboxylate transporter sdcS OS... [more]
SDCS_STAAN1.389e-2739.60Sodium-dependent dicarboxylate transporter sdcS OS... [more]
SDCS_STAAM1.389e-2739.60Sodium-dependent dicarboxylate transporter sdcS OS... [more]
SDCS_STAAC1.389e-2739.60Sodium-dependent dicarboxylate transporter sdcS OS... [more]

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Properties
Property NameValue
Genbank descriptionC05068A07SK DroRLeaf1 Citrus clementina cDNA clone C05068A07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295048 ID=CX295048; Name=CX295048; organism=Citrus clementina; type=EST; length=731bp
GAGGCTATATCATTGTGGATGACAAGATCAATAACAGATGACATTCCAGG
TTGGGGAGCACTCTTCAATGACCGTGCTGGTGATGGAACTGCTAGTGTGA
GTACTCTTTGGTCTTTTGTTTATCATTTGAGAACATAATTAAATGAGACA
TGTTTAATCAAGCTTTTGGATGATTTTTAACTGAATTATTAATACATATG
TATACACACACACACACACACACACACACAAATATAGGTTGTGATGGCAA
CATTGTTGTTCATAATTCCGAGCATGAAGCAAAAGGGAGAAAAATTGATG
GATTGGAACAAATGCAAGAAGCTACCTTGGAACATTATATTGCTTTTAGG
GGCTGGCTTTGCTATAGCTGATGGAGTCAGGACTAGCGGTCTTGCTGATG
ATCTGTCAAAAGCATTGGATTTCCTGGAGGCGGCGCCATATTTAGCCATT
GCACCTATCGTATGTCTGATTAGCGCGATTATTACTGAATTCACATCAAA
TAATGCCACAACAACTCTCGTTCTTCCACTTCTGATCCAAATAGCAAAAA
CTATGCATGTTCATCCATTGCTTCTTATGGTTCCTGGAGCAATTGGAGCA
CAATTTTCTTTCTTGTTGCCGACTGGAACCCCTTCAAATATTGTTGGATT
CACAACCGGGCACATCGAAATTCAAGATATGATCAAAGACAGGGCTGCCC
TTAAGATTGCTGGCATTGCTGCTCTGGCCTT
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