CX295094

Overview
NameCX295094
Unique NameCX295094
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length709
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX295094 vs. ExPASy Swiss-Prot
Match: CY11_SOLTU (Cytochrome c1-1, heme protein, mitochondrial OS=Solanum tuberosum GN=CYCL PE=2 SV=1)

HSP 1 Score: 241.891 bits (616), Expect = 2.565e-63
Identity = 117/125 (93.60%), Postives = 121/125 (96.80%), Query Frame = 1
Query:   10 SKARHDGQNYVFALLTGYRDPPAGVSIREGLHYNPYFPGGAIAMPKMLIDGALEYEDGTPATEAQMGKDVVTFLSWAAEPEMEERKLMGFKWIFVLSLALLQAGYYRRLRWSVLKSRKLVLDVVN 384
            +KARH+GQNYVFALLT YRDPPAGVSIREGLHYNPYFPGGAIAMPKML DGA+EYEDG PATEAQMGKDVV+FLSWAAEPEMEERKLMGFKWIFVLSLALLQA YYRRLRWSVLKSRKLVLDVVN
Sbjct:  196 TKARHNGQNYVFALLTAYRDPPAGVSIREGLHYNPYFPGGAIAMPKMLNDGAVEYEDGIPATEAQMGKDVVSFLSWAAEPEMEERKLMGFKWIFVLSLALLQAAYYRRLRWSVLKSRKLVLDVVN 320          
BLAST of CX295094 vs. ExPASy Swiss-Prot
Match: CY12_SOLTU (Cytochrome c1-2, heme protein, mitochondrial (Fragment) OS=Solanum tuberosum GN=CYCL PE=1 SV=1)

HSP 1 Score: 241.121 bits (614), Expect = 4.375e-63
Identity = 116/125 (92.80%), Postives = 121/125 (96.80%), Query Frame = 1
Query:   10 SKARHDGQNYVFALLTGYRDPPAGVSIREGLHYNPYFPGGAIAMPKMLIDGALEYEDGTPATEAQMGKDVVTFLSWAAEPEMEERKLMGFKWIFVLSLALLQAGYYRRLRWSVLKSRKLVLDVVN 384
            +KARH+GQNYVFALLT YRDPPAGVSIREGLHYNPYFPGGAIAMPKML DGA+EYEDG PATEAQMGKDVV+FL+WAAEPEMEERKLMGFKWIFVLSLALLQA YYRRLRWSVLKSRKLVLDVVN
Sbjct:  136 TKARHNGQNYVFALLTAYRDPPAGVSIREGLHYNPYFPGGAIAMPKMLNDGAVEYEDGVPATEAQMGKDVVSFLTWAAEPEMEERKLMGFKWIFVLSLALLQAAYYRRLRWSVLKSRKLVLDVVN 260          
BLAST of CX295094 vs. ExPASy Swiss-Prot
Match: CY1_NEUCR (Cytochrome c1, heme protein, mitochondrial OS=Neurospora crassa GN=cyt-1 PE=2 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 1.326e-35
Identity = 71/122 (58.20%), Postives = 93/122 (76.23%), Query Frame = 1
Query:   13 KARHDGQNYVFALLTGYRD-PPAGVSIREGLHYNPYFPGGAIAMPKMLIDGALEYEDGTPATEAQMGKDVVTFLSWAAEPEMEERKLMGFKWIFVLSLALLQAGYYRRLRWSVLKSRKLVLD 375
            KARH G +Y+F+LLTGY D PPAG S+  GL++NPYFPG  IAM ++L DG ++YEDGTPA+ +QM KDVV FL+WAAEPEM++RK MG K + V S+    + Y +R +W+ LKSRK+V D
Sbjct:  191 KARHGGCDYIFSLLTGYPDEPPAGASVGAGLNFNPYFPGTGIAMARVLYDGLVDYEDGTPASTSQMAKDVVEFLNWAAEPEMDDRKRMGMKVLVVTSVLFALSVYVKRYKWAWLKSRKIVYD 312          
BLAST of CX295094 vs. ExPASy Swiss-Prot
Match: CY1_YEAST (Cytochrome c1, heme protein, mitochondrial OS=Saccharomyces cerevisiae GN=CTC1 PE=1 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 3.267e-34
Identity = 67/122 (54.92%), Postives = 92/122 (75.41%), Query Frame = 1
Query:   13 KARHDGQNYVFALLTGYRD-PPAGVSIREGLHYNPYFPGGAIAMPKMLIDGALEYEDGTPATEAQMGKDVVTFLSWAAEPEMEERKLMGFKWIFVLSLALLQAGYYRRLRWSVLKSRKLVLD 375
            KARH G +Y+F+LLTGY D PPAGV++  G +YNPYFPGG+IAM ++L D  +EYEDGTPAT +QM KDV TFL+W AEPE +ERK +G K + +LS   L + + ++ +W+ +K+RK V +
Sbjct:  182 KARHGGCDYIFSLLTGYPDEPPAGVALPPGSNYNPYFPGGSIAMARVLFDDMVEYEDGTPATTSQMAKDVTTFLNWCAEPEHDERKRLGLKTVIILSSLYLLSIWVKKFKWAGIKTRKFVFN 303          
BLAST of CX295094 vs. ExPASy Swiss-Prot
Match: CY1_KLULA (Cytochrome c1, heme protein, mitochondrial OS=Kluyveromyces lactis GN=CYT1 PE=3 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 3.267e-34
Identity = 68/122 (55.74%), Postives = 91/122 (74.59%), Query Frame = 1
Query:   13 KARHDGQNYVFALLTGY-RDPPAGVSIREGLHYNPYFPGGAIAMPKMLIDGALEYEDGTPATEAQMGKDVVTFLSWAAEPEMEERKLMGFKWIFVLSLALLQAGYYRRLRWSVLKSRKLVLD 375
            KARH G +Y+FALLTGY  +PPAGV +  G +YNPYFPGG+IAM ++L D  +EYEDGTPAT +QM KDV TFL W +EPE +ERK +G K + VLS   L + + ++ +W+ +KSRK+V +
Sbjct:  167 KARHGGPDYIFALLTGYPEEPPAGVVLPPGANYNPYFPGGSIAMGRVLFDDLVEYEDGTPATTSQMAKDVTTFLHWCSEPEHDERKRLGLKAMIVLSSLYLLSVWVKKFKWASIKSRKIVFN 288          
BLAST of CX295094 vs. ExPASy Swiss-Prot
Match: CY1_MOUSE (Cytochrome c1, heme protein, mitochondrial OS=Mus musculus GN=Cyc1 PE=1 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 5.573e-34
Identity = 68/118 (57.63%), Postives = 87/118 (73.73%), Query Frame = 1
Query:   13 KARHDGQNYVFALLTGYRDPPAGVSIREGLHYNPYFPGGAIAMPKMLIDGALEYEDGTPATEAQMGKDVVTFLSWAAEPEMEERKLMGFKWIFVLSLALLQAGYYRRLRWSVLKSRKL 366
            +ARH G++YVF+LLTGY +PP GVS+REGL++NPYFPG AI M   +    LEY+DGTPAT +Q+ KDV TFL WA+EPE + RK MG K + ++ L L      +R +WSVLKSRKL
Sbjct:  202 RARHGGEDYVFSLLTGYCEPPTGVSLREGLYFNPYFPGQAIGMAPPIYTEVLEYDDGTPATMSQVAKDVATFLRWASEPEHDHRKRMGLKMLLMMGLLLPLTYAMKRHKWSVLKSRKL 319          
BLAST of CX295094 vs. ExPASy Swiss-Prot
Match: CY1_BOVIN (Cytochrome c1, heme protein, mitochondrial OS=Bos taurus GN=CYC1 PE=1 SV=2)

HSP 1 Score: 144.436 bits (363), Expect = 5.573e-34
Identity = 68/118 (57.63%), Postives = 88/118 (74.58%), Query Frame = 1
Query:   13 KARHDGQNYVFALLTGYRDPPAGVSIREGLHYNPYFPGGAIAMPKMLIDGALEYEDGTPATEAQMGKDVVTFLSWAAEPEMEERKLMGFKWIFVLSLALLQAGYYRRLRWSVLKSRKL 366
            +ARH G++YVF+LLTGY +PP GVS+REGL++NPYFPG AI M   + +  LE++DGTPAT +Q+ KDV TFL WAAEPE + RK MG K + ++ L L      +R +WSVLKSRKL
Sbjct:  202 RARHGGEDYVFSLLTGYCEPPTGVSLREGLYFNPYFPGQAIGMAPPIYNEVLEFDDGTPATMSQVAKDVCTFLRWAAEPEHDHRKRMGLKMLLMMGLLLPLVYAMKRHKWSVLKSRKL 319          
BLAST of CX295094 vs. ExPASy Swiss-Prot
Match: CY1_HUMAN (Cytochrome c1, heme protein, mitochondrial OS=Homo sapiens GN=CYC1 PE=1 SV=2)

HSP 1 Score: 143.665 bits (361), Expect = 9.506e-34
Identity = 67/118 (56.78%), Postives = 89/118 (75.42%), Query Frame = 1
Query:   13 KARHDGQNYVFALLTGYRDPPAGVSIREGLHYNPYFPGGAIAMPKMLIDGALEYEDGTPATEAQMGKDVVTFLSWAAEPEMEERKLMGFKWIFVLSLALLQAGYYRRLRWSVLKSRKL 366
            +ARH G++YVF+LLTGY +PP GVS+REGL++NPYFPG AIAM   +    LE++DGTPAT +Q+ KDV TFL WA+EPE + RK MG K + +++L +      +R +WSVLKSRKL
Sbjct:  202 RARHGGEDYVFSLLTGYCEPPTGVSLREGLYFNPYFPGQAIAMAPPIYTDVLEFDDGTPATMSQIAKDVCTFLRWASEPEHDHRKRMGLKMLMMMALLVPLVYTIKRHKWSVLKSRKL 319          
BLAST of CX295094 vs. ExPASy Swiss-Prot
Match: CY1_SCHPO (Cytochrome c1, heme protein, mitochondrial OS=Schizosaccharomyces pombe GN=cyt1 PE=2 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 1.241e-33
Identity = 62/118 (52.54%), Postives = 91/118 (77.12%), Query Frame = 1
Query:   13 KARHDGQNYVFALLTGYRDPPAGVSIREGLHYNPYFPGGAIAMPKMLIDGALEYEDGTPATEAQMGKDVVTFLSWAAEPEMEERKLMGFKWIFVLSLALLQAGYYRRLRWSVLKSRKL 366
            + RH GQ+Y+++LLTGY +PPAGV + +G+++NP+FPG  IAM + L D A+E+EDGTPAT AQ  KDVV FL WA+EPE++ RK MGF+ I VL++    + +Y+R +W+ +K+RK+
Sbjct:  183 RGRHGGQDYIYSLLTGYTEPPAGVEVPDGMNFNPFFPGTQIAMARPLFDDAVEFEDGTPATTAQAAKDVVNFLHWASEPELDIRKKMGFQVITVLTILTALSMWYKRFKWTPIKNRKI 300          
BLAST of CX295094 vs. ExPASy Swiss-Prot
Match: CY1_DICDI (Cytochrome c1, heme protein, mitochondrial OS=Dictyostelium discoideum GN=cyc1 PE=3 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 3.738e-30
Identity = 62/118 (52.54%), Postives = 86/118 (72.88%), Query Frame = 1
Query:   13 KARHDGQNYVFALLTGYRDPPAGVSIREGLHYNPYFPGGAIAMPKMLIDGALEYEDGTPATEAQMGKDVVTFLSWAAEPEMEERKLMGFKWIFVLSLALLQAGYYRRLRWSVLKSRKL 366
            KAR   ++YVF+LLTGY +PPAGV +  G ++NPYFPG  IAM   L DG +EY+DGT  + +QM KDV TFL WA+EPE ++RK +G K +  +S+  L   Y++RL+WSV+K+RK+
Sbjct:  154 KARGAHEDYVFSLLTGYCEPPAGVRVVGGQYFNPYFPGTKIAMAPPLADGMVEYDDGTDNSMSQMAKDVSTFLCWASEPEHDDRKKLGMKVLLGVSIIALPLFYWKRLKWSVIKTRKI 271          
The following BLAST results are available for this feature:
BLAST of CX295094 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 15
Match NameE-valueIdentityDescription
CY11_SOLTU2.565e-6393.60Cytochrome c1-1, heme protein, mitochondrial OS=So... [more]
CY12_SOLTU4.375e-6392.80Cytochrome c1-2, heme protein, mitochondrial (Frag... [more]
CY1_NEUCR1.326e-3558.20Cytochrome c1, heme protein, mitochondrial OS=Neur... [more]
CY1_YEAST3.267e-3454.92Cytochrome c1, heme protein, mitochondrial OS=Sacc... [more]
CY1_KLULA3.267e-3455.74Cytochrome c1, heme protein, mitochondrial OS=Kluy... [more]
CY1_MOUSE5.573e-3457.63Cytochrome c1, heme protein, mitochondrial OS=Mus ... [more]
CY1_BOVIN5.573e-3457.63Cytochrome c1, heme protein, mitochondrial OS=Bos ... [more]
CY1_HUMAN9.506e-3456.78Cytochrome c1, heme protein, mitochondrial OS=Homo... [more]
CY1_SCHPO1.241e-3352.54Cytochrome c1, heme protein, mitochondrial OS=Schi... [more]
CY1_DICDI3.738e-3052.54Cytochrome c1, heme protein, mitochondrial OS=Dict... [more]

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Properties
Property NameValue
Genbank descriptionC05068E06SK DroRLeaf1 Citrus clementina cDNA clone C05068E06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295094 ID=CX295094; Name=CX295094; organism=Citrus clementina; type=EST; length=709bp
GAGGCTTATTCCAAAGCTCGTCATGATGGTCAGAATTATGTGTTTGCTCT
TCTAACTGGTTATCGTGATCCTCCTGCTGGTGTTTCGATCAGAGAGGGAT
TGCACTATAATCCTTACTTTCCTGGCGGAGCAATTGCTATGCCTAAAATG
CTTATTGATGGTGCTTTAGAGTATGAAGATGGTACCCCTGCAACAGAAGC
TCAGATGGGAAAAGATGTTGTGACATTTTTATCGTGGGCTGCAGAACCGG
AAATGGAAGAGAGGAAGCTGATGGGTTTTAAATGGATATTCGTACTGTCA
TTGGCTTTACTTCAAGCTGGTTACTACCGGCGCCTGAGGTGGTCAGTTCT
TAAGTCCCGCAAGCTGGTCCTTGATGTCGTCAACTAGCTTCCCTTCTGGA
AATCAGAAATAATTGCTTGATCAGATGGTCTAGGTTTCTACTTCTTTTTT
GGAAATGGAGTGACCTGAAGAATCTTTTTTTCCCCAAGTTGTGAAGAAAT
AAGCTACTCCATATACCCGATACATTATTTTTTGTTAGAGATTTCTTTTT
GGGTGCCATATTTTCCTTGCTGAATTATCACTTCTCATAATTTGTTATTA
GTGGGATTTGTAAATGCAATCCTTGAAACAGAAGGAAACAATGGTCATTG
GTCAATGTACTTTACATCGGAATAAAGTCCTTTGACCTTATTCAGGGTGG
TTGGCCGAT
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