CX295224

Overview
NameCX295224
Unique NameCX295224
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length694
Libraries
Library NameType
PhIFruit1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CX295224 vs. ExPASy Swiss-Prot
Match: NOL_ARATH (Chlorophyll(ide) b reductase NOL, chloroplastic OS=Arabidopsis thaliana GN=NOL PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.960e-12
Identity = 36/40 (90.00%), Postives = 38/40 (95.00%), Query Frame = 3 
Query:  531 VQPGMVTTDLLMSGATTKQAKFFINVLAEPADVVAECLVP 650
            + PGMVTTDLLMSGATTKQAKFFINVLAEPA+VVAE LVP
Sbjct:  264 LSPGMVTTDLLMSGATTKQAKFFINVLAEPAEVVAEYLVP 303
[Close]
BLAST of CX295224 vs. ExPASy Swiss-Prot
Match: NOL_ORYSJ (Chlorophyll(ide) b reductase NOL, chloroplastic OS=Oryza sativa subsp. japonica GN=NOL PE=1 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.343e-12
Identity = 36/50 (72.00%), Postives = 45/50 (90.00%), Query Frame = 3 
Query:  531 VQPGMVTTDLLMSGATTKQAKFFINVLAEPADVVAECLVPKSDQSLPVDQ 680
            + PGMVTTDLLMSGATTKQAKFFIN+LAEPA+VVA+ LVP + +++P +Q
Sbjct:  259 LSPGMVTTDLLMSGATTKQAKFFINILAEPANVVADYLVP-NIRAIPTNQ 307
The following BLAST results are available for this feature:
BLAST of CX295224 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
NOL_ARATH1.960e-1290.00Chlorophyll(ide) b reductase NOL, chloroplastic OS... [more]
NOL_ORYSJ3.343e-1272.00Chlorophyll(ide) b reductase NOL, chloroplastic OS... [more]
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Properties
Property NameValue
Genbank descriptionC05070A02SK PhIFruit1 Citrus clementina cDNA clone C05070A02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295224 ID=CX295224; Name=CX295224; organism=Citrus clementina; type=EST; length=694bp
GAAATGCTTACCTTTTGATGTGAAAGTCATGTCTCTGAAACTGGTAACTT
AGCCTCCAGGTTTCAATCACCTGCTCATCTAACATGTTCTTGCTCAAATT
CGTTTTGAGGCCATCCTGACCTTTCTTTCAGCTGCAAGTTAAAACTCAAC
GACCATTAATATCCTCCATCCGTAAGAAGGTAAGATTATGTCGTAGGTCA
GCAACTGGTGCCAAATTGCTACACCAAAGAATGAAACACTGATCCTAAGA
TTATTTTACCTTGGCTCCACTTTGTAAATGATTCATGGTTGTGAATTATA
TCAAACTACCTTTCTTTTAGGCAGCCTTGTGTGTGATGTAACTAGCTTCT
ACTCCATGTTGTGCACCCATGAGAAACTTTAGTTTTACAGAGATTTGAAG
GATCGCTAATAGATTCCTCAATTATTTCATGCTGGGGTTAGCTTTGGGTT
CTAAGGTAACTGTTTTAGATGCCCCTTACCATGATACGCAATCGTTTTCA
TTTTTCATTTTTCATTTTTCATCAATTATTGTTCAGCCAGGAATGGTGAC
AACTGATCTTCTCATGTCTGGTGCTACTACAAAGCAGGCCAAATTCTTCA
TTAATGTTTTGGCAGAACCAGCTGATGTGGTTGCTGAGTGTCTTGTCCCT
AAATCAGATCAATCGCTGCCAGTGGATCAACAAGCCTACTTATC
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