CX295294

Overview
NameCX295294
Unique NameCX295294
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length698
Libraries
Library NameType
PhIFruit1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX295294 vs. ExPASy Swiss-Prot
Match: BH096_ARATH (Transcription factor bHLH96 OS=Arabidopsis thaliana GN=BHLH96 PE=2 SV=1)

HSP 1 Score: 190.66 bits (483), Expect = 6.560e-48
Identity = 110/211 (52.13%), Postives = 132/211 (62.56%), Query Frame = 3
Query:   63 NFNEFYSEDXXXXXXXXXSSILDADHPLHQMDITLPNNRPKRRRAKSRKNQEEIENQRMTHIAVERNRRKQMNEYLSVLRSLMPDSYVQRGDQASIIGGAINFVKELEQRLQSL------------GARKEIKENSESGSTLFAEFFAFPQYXXXXXXXXXXAIMSNETQNSIADIEVNMVESHANLKIRSKRRPKQLLKLVSGLQSMRLT 659
            N+NE   ED          S +D +      D+     R KRRR +S KN+EEIENQRMTHIAVERNRRKQMNEYL+VLRSLMP  Y QRGDQASI+GGAIN++KELE  LQS+                + K  S S S  F++FFAFPQY             S      +A+IEV MVESHA+LKI +K+RP+QLLKLVS +QS+RLT
Sbjct:   70 NYNE---EDLQWPRDLPYGSAVDTESQPPPSDVAAGGGRRKRRRTRSSKNKEEIENQRMTHIAVERNRRKQMNEYLAVLRSLMPPYYAQRGDQASIVGGAINYLKELEHHLQSMEPPVKTATEDTGAGHDQTKTTSASSSGPFSDFFAFPQYSNRP--------TSAAAAEGMAEIEVTMVESHASLKILAKKRPRQLLKLVSSIQSLRLT 269          
BLAST of CX295294 vs. ExPASy Swiss-Prot
Match: BH094_ARATH (Transcription factor bHLH94 OS=Arabidopsis thaliana GN=BHLH94 PE=2 SV=2)

HSP 1 Score: 184.111 bits (466), Expect = 6.140e-46
Identity = 100/171 (58.48%), Postives = 127/171 (74.27%), Query Frame = 3
Query:  168 PNNRPKRRRAKSRKNQEEIENQRMTHIAVERNRRKQMNEYLSVLRSLMPDSYVQRGDQASIIGGAINFVKELEQRLQSLGARK----EIKENSESGSTL---FAEFFAFPQYXXXXXXXXXXAIMSNETQNSIADIEVNMVESHANLKIRSKRRPKQLLKLVSGLQSMRLT 659
            P +R KRRR ++ KN+EEIENQRMTHIAVERNRRKQMNEYL+VLRSLMP SY QRGDQASI+GGAIN+VKELE  LQS+  ++    + K +  S S+L   F +FF+FPQY               E+ +S A+IEV + ESHAN+KI +K++P+QLLKL++ LQS+RLT
Sbjct:   92 PQHRRKRRRTRNCKNKEEIENQRMTHIAVERNRRKQMNEYLAVLRSLMPSSYAQRGDQASIVGGAINYVKELEHILQSMEPKRTRTHDPKGDKTSTSSLVGPFTDFFSFPQYSTKSSSDVP------ESSSSPAEIEVTVAESHANIKIMTKKKPRQLLKLITSLQSLRLT 256          
BLAST of CX295294 vs. ExPASy Swiss-Prot
Match: BH099_ARATH (Transcription factor bHLH99 OS=Arabidopsis thaliana GN=BHLH99 PE=2 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 2.049e-33
Identity = 76/166 (45.78%), Postives = 112/166 (67.47%), Query Frame = 3
Query:  183 KRRRAKSRKNQEEIENQRMTHIAVERNRRKQMNEYLSVLRSLMPDSYVQRGDQASIIGGAINFVKELEQRLQSLGARKEIKENSESGSTLFAEFFAFPQYXXXXXXXXXXAIMSNETQNS------IADIEVNMVESHANLKIRSKRRPKQLLKLVSGLQSMRLTS 662
            ++RR +S K   + ENQRM HIAVERNRRKQMN +LS+L+S+MP SY Q  DQASII G I+++K+LEQRLQSL A+ +  + ++S   +F++FF FPQY          A  S+ + +       +AD+EV MVE HAN+K+ +K +P+ L K+++   S+ L++
Sbjct:   84 RKRRRRSEKTIVDKENQRMNHIAVERNRRKQMNHFLSILKSMMPLSYSQPNDQASIIEGTISYLKKLEQRLQSLEAQLKATKLNQS-PNIFSDFFMFPQYSTATATATATASSSSSSHHHHKRLEVVADVEVTMVERHANIKVLTKTQPRLLFKIINEFNSLGLST 248          
BLAST of CX295294 vs. ExPASy Swiss-Prot
Match: FAMA_ARATH (Transcription factor FAMA OS=Arabidopsis thaliana GN=FMA PE=1 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 2.676e-33
Identity = 81/184 (44.02%), Postives = 113/184 (61.41%), Query Frame = 3
Query:  156 DITLPNNRPKRRRAKSRKNQEEIENQRMTHIAVERNRRKQMNEYLSVLRSLMPDSYVQRGDQASIIGGAINFVKELEQRLQSLGARKEIKENSESGSTLFAEFFAFPQYXXXXXXXXXXAIMSN----------------ETQNSIADIEVNMVESHANLKIRSKRRPKQLLKLVSGLQSMRLT 659
            ++T    + KR+RA++ K  EE+E+QRMTHIAVERNRRKQMNE+L VLRSLMP SYVQRGDQASIIGGAI FV+ELEQ LQ L ++K  +   E+G  +     +               I++                 E ++ +AD+EV ++   A +KI S+RRP QL+K ++ L+ + L+
Sbjct:  170 NVTKKEVKSKRKRARTSKTSEEVESQRMTHIAVERNRRKQMNEHLRVLRSLMPGSYVQRGDQASIIGGAIEFVRELEQLLQCLESQKRRRILGETGRDMTTTTTSSSSPITTVANQAQPLIITGNVTELEGGGGLREETAENKSCLADVEVKLLGFDAMIKILSRRRPGQLIKTIAALEDLHLS 353          
BLAST of CX295294 vs. ExPASy Swiss-Prot
Match: BH070_ARATH (Transcription factor bHLH70 OS=Arabidopsis thaliana GN=BHLH70 PE=2 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 4.564e-33
Identity = 80/166 (48.19%), Postives = 109/166 (65.66%), Query Frame = 3
Query:  165 LPNNRPKRRRAKSRKNQEEIENQRMTHIAVERNRRKQMNEYLSVLRSLMPDSYVQRGDQASIIGGAINFVKELEQRLQSLGARKEIKENSESGSTLFAEFFAFPQYXXXXXXXXXXAIMSN-ETQNSIADIEVNMVESHANLKIRSKRRPKQLLKLVSGLQSMRLT 659
            +   + KRRR K  KN EEIE+QRMTHIAVERNRR+QMN +L+ LRS++P SY+QRGDQASI+GGAI+FVK LEQ+LQSL A+K  +++ ++   +       P+              SN E Q+S   IE  ++ESH NLKI+  R+  QLL+ +  L+ +R T
Sbjct:  169 MTREKRKRRRTKPTKNIEEIESQRMTHIAVERNRRRQMNVHLNSLRSIIPSSYIQRGDQASIVGGAIDFVKILEQQLQSLEAQKRSQQSDDNKEQI-------PEDNSLRNISSNKLRASNKEEQSSKLKIEATVIESHVNLKIQCTRKQGQLLRSIILLEKLRFT 327          
BLAST of CX295294 vs. ExPASy Swiss-Prot
Match: BH071_ARATH (Transcription factor bHLH71 OS=Arabidopsis thaliana GN=BHLH71 PE=1 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 8.608e-32
Identity = 88/212 (41.51%), Postives = 116/212 (54.72%), Query Frame = 3
Query:  120 SILDADHPLHQMDITLPNNRPKRRRAKSR--KNQEEIENQRMTHIAVERNRRKQMNEYLSVLRSLMPDSYVQRGDQASIIGGAINFVKELEQRLQSLGARKE-------------------IKENSESGSTLFAEFFAFPQYXXXXXXXXXXAIMSNETQNSIADIEVNMVESHANLKIRSKRR-----------PKQLLKLVSGLQSMRLT 659
            S +    P  Q      N   KRRR K R  KN+EE ENQRMTHIAVERNRR+QMN++LSVLRSLMP  +  +GDQASI+GGAI+F+KELE +L SL A+K                     +EN    S+L    F    Y             ++  +  + D+EV ++E+HAN++I S+RR           P QL KLV+ LQS+ L+
Sbjct:   47 SEISNQEPPPQRQPPATNRGKKRRRRKPRVCKNEEEAENQRMTHIAVERNRRRQMNQHLSVLRSLMPQPFAHKGDQASIVGGAIDFIKELEHKLLSLEAQKHHNAKLNQSVTSSTSQDSNGEQENPHQPSSLSLSQFFLHSYDPSQENRNG---STSSVKTPMEDLEVTLIETHANIRILSRRRGFRWSTLATTKPPQLSKLVASLQSLSLS 255          
BLAST of CX295294 vs. ExPASy Swiss-Prot
Match: BH057_ARATH (Transcription factor bHLH57 OS=Arabidopsis thaliana GN=BHLH57 PE=2 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 1.124e-31
Identity = 74/175 (42.29%), Postives = 111/175 (63.43%), Query Frame = 3
Query:  159 ITLPNNRPKRRRAKSRKNQEEIENQRMTHIAVERNRRKQMNEYLSVLRSLMPDSYVQRGDQASIIGGAINFVKELEQRLQSLGARKEIKENSESGSTLFAEFFAFPQYXXXXXXXXXXAIMSNETQNSI---------ADIEVNMVESHANLKIRSKRRPKQLLKLVSGLQSMRL 656
            +T+   R KR+R ++ KN++E+ENQRMTHIAVERNRR+QMNE+L+ LRSLMP S++QRGDQASI+GGAI+F+KELEQ LQSL A K      E+  T      +              + +S  ++N            ++E  ++++H +LK+R KR  +Q+LK +  ++ ++L
Sbjct:   90 VTVKEKR-KRKRTRAPKNKDEVENQRMTHIAVERNRRRQMNEHLNSLRSLMPPSFLQRGDQASIVGGAIDFIKELEQLLQSLEAEKRKDGTDETPKTA-----SCSSSSSLACTNSSISSVSTTSENGFTARFGGGDTTEVEATVIQNHVSLKVRCKRGKRQILKAIVSIEELKL 258          
BLAST of CX295294 vs. ExPASy Swiss-Prot
Match: BH067_ARATH (Transcription factor bHLH67 OS=Arabidopsis thaliana GN=BHLH67 PE=2 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 1.468e-31
Identity = 76/177 (42.94%), Postives = 109/177 (61.58%), Query Frame = 3
Query:  147 HQMDITLPNNRPKRRRAKSRKNQEEIENQRMTHIAVERNRRKQMNEYLSVLRSLMPDSYVQRGDQASIIGGAINFVKELEQRLQSLGARKEIKENSESGSTLFAEFFAFPQYXXXXXXXXXXAIMSN------ETQNSIADIEVNMVESHANLKIRSKRRPKQLLKLVSGLQSMRLT 659
            H +   +   + KRR+ K  KN EEIENQR+ HIAVERNRR+QMNE+++ LR+L+P SY+QRGDQASI+GGAIN+VK LEQ +QSL ++K  ++ S S     A                   I SN      E Q  I  IE  ++++H +LK++ +++  QLLK +  L+ ++LT
Sbjct:  148 HLLPQEMTREKRKRRKTKPSKNNEEIENQRINHIAVERNRRRQMNEHINSLRALLPPSYIQRGDQASIVGGAINYVKVLEQIIQSLESQKRTQQQSNSEVVENA-------------LNHLSGISSNDLWTTLEDQTCIPKIEATVIQNHVSLKVQCEKKQGQLLKGIISLEKLKLT 311          
BLAST of CX295294 vs. ExPASy Swiss-Prot
Match: SPCH_ARATH (Transcription factor SPEECHLESS OS=Arabidopsis thaliana GN=SPCH PE=1 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 2.598e-20
Identity = 54/106 (50.94%), Postives = 73/106 (68.87%), Query Frame = 3
Query:  171 NNRPKRR--RAKSRKNQEEIEN---------------QRMTHIAVERNRRKQMNEYLSVLRSLMPDSYVQRGDQASIIGGAINFVKELEQRLQSLGARKEIKENSE 437
            N+ PKR+  R ++RK ++E E                Q+M+H+ VERNRRKQMNE+L+VLRSLMP  YV+RGDQASIIGG + ++ EL+Q LQSL A+K+ K  +E
Sbjct:   63 NSSPKRKKQRLETRKEEDEEEEDGDGEAEEDNKQDGQQKMSHVTVERNRRKQMNEHLTVLRSLMPCFYVKRGDQASIIGGVVEYISELQQVLQSLEAKKQRKTYAE 168          
BLAST of CX295294 vs. ExPASy Swiss-Prot
Match: MUTE_ARATH (Transcription factor MUTE OS=Arabidopsis thaliana GN=MUTE PE=2 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.334e-16
Identity = 56/153 (36.60%), Postives = 83/153 (54.25%), Query Frame = 3
Query:  237 MTHIAVERNRRKQMNEYLSVLRSLMPDSYVQRGDQASIIGGAINFVKELEQRLQSLGARKE---------------IKENSESGSTLFAEFFAFPQYXXXXXXXXXXAIMSNETQNSIADIEVNMVESHANLKIRSKRRPKQLLKLVSGLQSM 650
            M+HIAVERNRR+QMNE+L  LRSL P  Y++RGDQASIIGG I F+KEL+Q +Q L ++K                I+ +S   +T    F                A  ++      A++E  +  S+  L++ S+R   QL+K++S L+ +
Sbjct:    1 MSHIAVERNRRRQMNEHLKSLRSLTPCFYIKRGDQASIIGGVIEFIKELQQLVQVLESKKRRKTLNRPSFPYDHQTIEPSSLGAATTRVPFSRIENVMTTSTFKEVGACCNSPH----ANVEAKISGSNVVLRVVSRRIVGQLVKIISVLEKL 149          
The following BLAST results are available for this feature:
BLAST of CX295294 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 10
Match NameE-valueIdentityDescription
BH096_ARATH6.560e-4852.13Transcription factor bHLH96 OS=Arabidopsis thalian... [more]
BH094_ARATH6.140e-4658.48Transcription factor bHLH94 OS=Arabidopsis thalian... [more]
BH099_ARATH2.049e-3345.78Transcription factor bHLH99 OS=Arabidopsis thalian... [more]
FAMA_ARATH2.676e-3344.02Transcription factor FAMA OS=Arabidopsis thaliana ... [more]
BH070_ARATH4.564e-3348.19Transcription factor bHLH70 OS=Arabidopsis thalian... [more]
BH071_ARATH8.608e-3241.51Transcription factor bHLH71 OS=Arabidopsis thalian... [more]
BH057_ARATH1.124e-3142.29Transcription factor bHLH57 OS=Arabidopsis thalian... [more]
BH067_ARATH1.468e-3142.94Transcription factor bHLH67 OS=Arabidopsis thalian... [more]
SPCH_ARATH2.598e-2050.94Transcription factor SPEECHLESS OS=Arabidopsis tha... [more]
MUTE_ARATH1.334e-1636.60Transcription factor MUTE OS=Arabidopsis thaliana ... [more]
back to top
Properties
Property NameValue
Genbank descriptionC05070F12SK PhIFruit1 Citrus clementina cDNA clone C05070F12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295294 ID=CX295294; Name=CX295294; organism=Citrus clementina; type=EST; length=698bp
GAGGGGAACACAACTCCACATCTTCTTCTCCTCCTGCTCCTACTCCTTCA
ATAATGGTGCCAAATTTCAATGAGTTTTACTCAGAAGATGCTAATGCTAA
CGTTAACGCTAACGTCAGCTCAATATTGGACGCTGATCATCCGCTTCATC
AGATGGATATTACTTTGCCAAATAATCGTCCCAAGAGACGGCGAGCCAAG
AGCAGAAAGAACCAAGAAGAGATTGAGAATCAAAGAATGACTCACATTGC
TGTTGAACGCAATAGAAGAAAGCAAATGAATGAATATCTCTCGGTTCTCC
GATCTCTAATGCCTGATTCTTATGTTCAAAGGGGTGATCAAGCATCTATA
ATTGGAGGTGCCATTAACTTTGTTAAGGAGCTGGAGCAGAGGCTGCAATC
CCTTGGTGCCAGAAAGGAAATCAAAGAAAATTCTGAAAGTGGCTCAACAT
TATTCGCTGAATTTTTTGCATTTCCACAATACTCAACAAGTTCAAGTCGC
TCTGAGAGTGAAGCAATAATGAGTAATGAGACTCAAAATTCAATAGCTGA
TATTGAAGTAAACATGGTGGAGAGCCATGCTAATCTCAAAATAAGATCAA
AACGGCGGCCGAAGCAGCTCTTGAAGCTCGTTTCTGGGCTCCAAAGCATG
CGCCTTACATCTTGCACTTCATGTTACCACTGCTGATGAATTGTTCTC
back to top