CX295307

Overview
NameCX295307
Unique NameCX295307
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length750
Libraries
Library NameType
PhIFruit1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CX295307 vs. ExPASy Swiss-Prot
Match: GME2_ORYSJ (GDP-mannose 3,5-epimerase 2 OS=Oryza sativa subsp. japonica GN=GME-2 PE=2 SV=2)

HSP 1 Score: 293.508 bits (750), Expect = 8.178e-79
Identity = 144/160 (90.00%), Postives = 153/160 (95.62%), Query Frame = 1 
Query:    4 ASCRIRTRALTSTDKFEMWGDGLQTRSFTFIDECVEGVLRLTKSDFREPVNIGSDEMVSMNEMAEIVLSFEDKKLPIHHIPGPEGVRGRNSDNTLIKEKLGWAPSMKLKDGLRITYFWIKEQIEKEKTQGIDLSVYGSSKVVGTQAPVQLGSLRAADGKE 483
            A CR   +ALTSTD+FEMWGDGLQTRSFTFIDECVEGVLRLTKSDFREPVNIGSDEMVSMNEMAEIVLSFE+K+LPIHHIPGPEGVRGRNSDNTLIKEKLGWAP+M+LKDGLRITYFWIKEQ+EKEK +G+DLS YGSSKVV TQAPVQLGSLRAADGKE
Sbjct:  215 AFCR---KALTSTDRFEMWGDGLQTRSFTFIDECVEGVLRLTKSDFREPVNIGSDEMVSMNEMAEIVLSFENKQLPIHHIPGPEGVRGRNSDNTLIKEKLGWAPTMRLKDGLRITYFWIKEQLEKEKAEGVDLSAYGSSKVVQTQAPVQLGSLRAADGKE 371
[Close]
BLAST of CX295307 vs. ExPASy Swiss-Prot
Match: GME1_ORYSJ (GDP-mannose 3,5-epimerase 1 OS=Oryza sativa subsp. japonica GN=GME-1 PE=1 SV=1)

HSP 1 Score: 292.738 bits (748), Expect = 1.395e-78
Identity = 143/160 (89.38%), Postives = 152/160 (95.00%), Query Frame = 1 
Query:    4 ASCRIRTRALTSTDKFEMWGDGLQTRSFTFIDECVEGVLRLTKSDFREPVNIGSDEMVSMNEMAEIVLSFEDKKLPIHHIPGPEGVRGRNSDNTLIKEKLGWAPSMKLKDGLRITYFWIKEQIEKEKTQGIDLSVYGSSKVVGTQAPVQLGSLRAADGKE 483
            A CR   +A TSTD+FEMWGDGLQTRSFTFIDECVEGVLRLTKSDFREPVNIGSDEMVSMNEMAEI+LSFED++LPIHHIPGPEGVRGRNSDNTLIKEKLGWAP+MKLKDGLR TYFWIKEQIEKEKTQG+D++ YGSSKVV TQAPVQLGSLRAADGKE
Sbjct:  222 AFCR---KAQTSTDRFEMWGDGLQTRSFTFIDECVEGVLRLTKSDFREPVNIGSDEMVSMNEMAEIILSFEDRELPIHHIPGPEGVRGRNSDNTLIKEKLGWAPTMKLKDGLRFTYFWIKEQIEKEKTQGVDIAGYGSSKVVSTQAPVQLGSLRAADGKE 378
[Close]
BLAST of CX295307 vs. ExPASy Swiss-Prot
Match: GME1_ORYSI (GDP-mannose 3,5-epimerase 1 OS=Oryza sativa subsp. indica GN=OsI_032456 PE=2 SV=1)

HSP 1 Score: 292.738 bits (748), Expect = 1.395e-78
Identity = 143/160 (89.38%), Postives = 152/160 (95.00%), Query Frame = 1 
Query:    4 ASCRIRTRALTSTDKFEMWGDGLQTRSFTFIDECVEGVLRLTKSDFREPVNIGSDEMVSMNEMAEIVLSFEDKKLPIHHIPGPEGVRGRNSDNTLIKEKLGWAPSMKLKDGLRITYFWIKEQIEKEKTQGIDLSVYGSSKVVGTQAPVQLGSLRAADGKE 483
            A CR   +A TSTD+FEMWGDGLQTRSFTFIDECVEGVLRLTKSDFREPVNIGSDEMVSMNEMAEI+LSFED++LPIHHIPGPEGVRGRNSDNTLIKEKLGWAP+MKLKDGLR TYFWIKEQIEKEKTQG+D++ YGSSKVV TQAPVQLGSLRAADGKE
Sbjct:  222 AFCR---KAQTSTDRFEMWGDGLQTRSFTFIDECVEGVLRLTKSDFREPVNIGSDEMVSMNEMAEIILSFEDRELPIHHIPGPEGVRGRNSDNTLIKEKLGWAPTMKLKDGLRFTYFWIKEQIEKEKTQGVDIAGYGSSKVVSTQAPVQLGSLRAADGKE 378
[Close]
BLAST of CX295307 vs. ExPASy Swiss-Prot
Match: GME_ARATH (GDP-mannose 3,5-epimerase OS=Arabidopsis thaliana GN=At5g28840 PE=1 SV=1)

HSP 1 Score: 289.271 bits (739), Expect = 1.542e-77
Identity = 142/160 (88.75%), Postives = 152/160 (95.00%), Query Frame = 1 
Query:    4 ASCRIRTRALTSTDKFEMWGDGLQTRSFTFIDECVEGVLRLTKSDFREPVNIGSDEMVSMNEMAEIVLSFEDKKLPIHHIPGPEGVRGRNSDNTLIKEKLGWAPSMKLKDGLRITYFWIKEQIEKEKTQGIDLSVYGSSKVVGTQAPVQLGSLRAADGKE 483
            A CR   +A TSTD+FEMWGDGLQTRSFTFIDECVEGVLRLTKSDFREPVNIGSDEMVSMNEMAE+VLSFE+KKLPIHHIPGPEGVRGRNSDN LIKEKLGWAP+M+LK+GLRITYFWIKEQIEKEK +G D+S+YGSSKVVGTQAPVQLGSLRAADGKE
Sbjct:  221 AFCR---KAQTSTDRFEMWGDGLQTRSFTFIDECVEGVLRLTKSDFREPVNIGSDEMVSMNEMAEMVLSFEEKKLPIHHIPGPEGVRGRNSDNNLIKEKLGWAPNMRLKEGLRITYFWIKEQIEKEKAKGSDVSLYGSSKVVGTQAPVQLGSLRAADGKE 377
The following BLAST results are available for this feature:
BLAST of CX295307 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
GME2_ORYSJ8.178e-7990.00GDP-mannose 3,5-epimerase 2 OS=Oryza sativa subsp.... [more]
GME1_ORYSJ1.395e-7889.38GDP-mannose 3,5-epimerase 1 OS=Oryza sativa subsp.... [more]
GME1_ORYSI1.395e-7889.38GDP-mannose 3,5-epimerase 1 OS=Oryza sativa subsp.... [more]
GME_ARATH1.542e-7788.75GDP-mannose 3,5-epimerase OS=Arabidopsis thaliana ... [more]
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Properties
Property NameValue
Genbank descriptionC05070H01SK PhIFruit1 Citrus clementina cDNA clone C05070H01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295307 ID=CX295307; Name=CX295307; organism=Citrus clementina; type=EST; length=750bp
GAGGCCTCGTGCCGAATTCGCACGAGGGCTCTTACTTCAACTGACAAGTT
TGAGATGTGGGGAGATGGACTTCAAACTCGATCTTTCACCTTCATTGATG
AATGTGTTGAAGGTGTGCTCAGATTGACGAAGTCAGACTTCCGTGAGCCA
GTGAACATTGGTAGTGATGAGATGGTTAGCATGAACGAGATGGCTGAGAT
TGTTCTTAGCTTTGAGGACAAGAAGCTACCTATCCACCACATTCCTGGCC
CTGAGGGTGTCCGTGGTCGTAATTCAGACAACACACTGATCAAAGAGAAG
CTTGGTTGGGCACCATCCATGAAGTTGAAGGATGGGCTGAGAATTACGTA
TTTCTGGATCAAGGAACAGATTGAGAAGGAGAAGACTCAAGGTATTGACC
TATCTGTTTATGGATCATCGAAGGTGGTAGGAACTCAAGCACCAGTTCAG
TTAGGCTCACTTCGTGCTGCTGATGGCAAAGAATGAAGTGGTTGAGCCAT
ACATCTCTCGTAGTTGCCCTCAGAAAAGCCATGTTTTATTATGCTATTTC
TAGCAATCATAATTCCATGTTGTCTTTATGATATAAAGCTATCATTATGA
GTTAAAAATTTACTTGTGTGGAGATTTAGGAACGCTTTGAGTTTGGACCA
TTCTTCAAATTGGTTTCTAGTCTGTACTATGCTGAAGTGTCTGGGAGAGC
TTTTGCGCTCATTGTATTTTACTAGCTTTCAGTGGAGCTGCTACAGTAGG
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