CX295334

Overview
NameCX295334
Unique NameCX295334
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length684
Libraries
Library NameType
PhIFruit1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX295334_ssr54 microsatellite CX295334_ssr54:54..65. BLAST: Citrus ESTs to Populus V2 proteins
Homology
BLAST of CX295334 vs. ExPASy Swiss-Prot
Match: RR8_CITSI (30S ribosomal protein S8, chloroplastic OS=Citrus sinensis GN=rps8 PE=3 SV=1)

HSP 1 Score: 234.572 bits (597), Expect = 3.795e-61
Identity = 120/122 (98.36%), Postives = 120/122 (98.36%), Query Frame = -2
Query:  324 NADMNRKGTVRIASTNITENVVKILLREGFIENARKLVENK--KEFLVLTLRHRRNRKGPYRPILNLKRISRPGLRIYFNYRRIPRILDGMGIVILSTSRGIMTDRAARLERIGGEILCYIW 683
            NADMNRKGTVRIASTNITENVVKILLREGFIENARKLVENK  KEFLVLTLRHRRNRKGPYRPILNLKRISRPGLRIYFNYRRIPRILDGMGIVILSTSRGIMTDRAARLERIGGEILCYIW
Sbjct:   15 NADMNRKGTVRIASTNITENVVKILLREGFIENARKLVENKNKKEFLVLTLRHRRNRKGPYRPILNLKRISRPGLRIYFNYRRIPRILDGMGIVILSTSRGIMTDRAARLERIGGEILCYIW 136          
BLAST of CX295334 vs. ExPASy Swiss-Prot
Match: RR8_EUCGG (30S ribosomal protein S8, chloroplastic OS=Eucalyptus globulus subsp. globulus GN=rps8 PE=3 SV=1)

HSP 1 Score: 209.534 bits (532), Expect = 1.307e-53
Identity = 105/120 (87.50%), Postives = 110/120 (91.67%), Query Frame = -2
Query:  324 NADMNRKGTVRIASTNITENVVKILLREGFIENARKLVENKKEFLVLTLRHRRNRKGPYRPILNLKRISRPGLRIYFNYRRIPRILDGMGIVILSTSRGIMTDRAARLERIGGEILCYIW 683
            NADMNRKGT++IASTNITEN+VKILLREGFI+N RK  EN K FLVLTLRHRRNRKGPYR ILNLKRISRPGLRIY NY+RIPRIL GMGIVILSTSRGIMTDR ARLE IGGEILCYIW
Sbjct:   15 NADMNRKGTIQIASTNITENIVKILLREGFIKNVRKHQENNKYFLVLTLRHRRNRKGPYRTILNLKRISRPGLRIYSNYQRIPRILGGMGIVILSTSRGIMTDREARLEGIGGEILCYIW 134          
BLAST of CX295334 vs. ExPASy Swiss-Prot
Match: RR8_PANGI (30S ribosomal protein S8, chloroplastic OS=Panax ginseng GN=rps8 PE=3 SV=1)

HSP 1 Score: 206.453 bits (524), Expect = 1.107e-52
Identity = 105/120 (87.50%), Postives = 110/120 (91.67%), Query Frame = -2
Query:  324 NADMNRKGTVRIASTNITENVVKILLREGFIENARKLVENKKEFLVLTLRHRRNRKGPYRPILNLKRISRPGLRIYFNYRRIPRILDGMGIVILSTSRGIMTDRAARLERIGGEILCYIW 683
            NADM++K  VRIASTNITENVVKILLREGFIEN RK  ENKK+FLVLTLRHRRNRK PYR ILNLKRISRPGLRIY NY+RIPRIL G+GIVILSTSRGIMTDR ARLERIGGEILCYIW
Sbjct:   15 NADMDKKRVVRIASTNITENVVKILLREGFIENVRKHQENKKDFLVLTLRHRRNRKRPYRNILNLKRISRPGLRIYSNYQRIPRILGGIGIVILSTSRGIMTDREARLERIGGEILCYIW 134          
BLAST of CX295334 vs. ExPASy Swiss-Prot
Match: RR8_VITVI (30S ribosomal protein S8, chloroplastic OS=Vitis vinifera GN=rps8 PE=3 SV=1)

HSP 1 Score: 203.756 bits (517), Expect = 7.174e-52
Identity = 104/120 (86.67%), Postives = 108/120 (90.00%), Query Frame = -2
Query:  324 NADMNRKGTVRIASTNITENVVKILLREGFIENARKLVENKKEFLVLTLRHRRNRKGPYRPILNLKRISRPGLRIYFNYRRIPRILDGMGIVILSTSRGIMTDRAARLERIGGEILCYIW 683
            N DM+RK TVRIASTNITEN+VKILLREGFIEN RK  E+ K FLVLTLRHRRNRKG YR ILNLKRISRPGLRIY NY+RIPRIL GMGIVILSTSRGIMTDR ARLERIGGEILCYIW
Sbjct:   15 NVDMDRKVTVRIASTNITENIVKILLREGFIENVRKHQESNKYFLVLTLRHRRNRKGTYRTILNLKRISRPGLRIYSNYQRIPRILGGMGIVILSTSRGIMTDREARLERIGGEILCYIW 134          
BLAST of CX295334 vs. ExPASy Swiss-Prot
Match: RR8_CUCSA (30S ribosomal protein S8, chloroplastic OS=Cucumis sativus GN=rps8 PE=3 SV=1)

HSP 1 Score: 201.06 bits (510), Expect = 4.650e-51
Identity = 100/120 (83.33%), Postives = 108/120 (90.00%), Query Frame = -2
Query:  324 NADMNRKGTVRIASTNITENVVKILLREGFIENARKLVENKKEFLVLTLRHRRNRKGPYRPILNLKRISRPGLRIYFNYRRIPRILDGMGIVILSTSRGIMTDRAARLERIGGEILCYIW 683
            NADMNRKG VRI +TNITEN+VKILLREGFIEN RK  E+ K+F VLTLRHRRNRKGPY+ ILNLKRISRPGLRIY NY++IPRIL GMGIVILSTSRGIMTDR ARL+ IGGEILCYIW
Sbjct:   15 NADMNRKGMVRIPATNITENIVKILLREGFIENVRKHRESNKDFWVLTLRHRRNRKGPYKTILNLKRISRPGLRIYSNYQKIPRILGGMGIVILSTSRGIMTDREARLQGIGGEILCYIW 134          
BLAST of CX295334 vs. ExPASy Swiss-Prot
Match: RR8_SOLTU (30S ribosomal protein S8, chloroplastic OS=Solanum tuberosum GN=rps8 PE=3 SV=1)

HSP 1 Score: 200.675 bits (509), Expect = 6.073e-51
Identity = 103/120 (85.83%), Postives = 107/120 (89.17%), Query Frame = -2
Query:  324 NADMNRKGTVRIASTNITENVVKILLREGFIENARKLVENKKEFLVLTLRHRRNRKGPYRPILNLKRISRPGLRIYFNYRRIPRILDGMGIVILSTSRGIMTDRAARLERIGGEILCYIW 683
            NADM+RK  VRIASTNITEN+V+ILLREGFIEN RK  EN K FLVLTLRHRRNRK PYR ILNLKRISRPGLRIY NY+RIPRIL GMGIVILSTSRGIMTDR ARLE IGGEILCYIW
Sbjct:   15 NADMDRKRVVRIASTNITENIVQILLREGFIENVRKHRENNKYFLVLTLRHRRNRKRPYRNILNLKRISRPGLRIYSNYQRIPRILGGMGIVILSTSRGIMTDREARLEGIGGEILCYIW 134          
BLAST of CX295334 vs. ExPASy Swiss-Prot
Match: RR8_SOLLC (30S ribosomal protein S8, chloroplastic OS=Solanum lycopersicum GN=rps8 PE=3 SV=1)

HSP 1 Score: 200.675 bits (509), Expect = 6.073e-51
Identity = 103/120 (85.83%), Postives = 107/120 (89.17%), Query Frame = -2
Query:  324 NADMNRKGTVRIASTNITENVVKILLREGFIENARKLVENKKEFLVLTLRHRRNRKGPYRPILNLKRISRPGLRIYFNYRRIPRILDGMGIVILSTSRGIMTDRAARLERIGGEILCYIW 683
            NADM+RK  VRIASTNITEN+V+ILLREGFIEN RK  EN K FLVLTLRHRRNRK PYR ILNLKRISRPGLRIY NY+RIPRIL GMGIVILSTSRGIMTDR ARLE IGGEILCYIW
Sbjct:   15 NADMDRKRVVRIASTNITENIVQILLREGFIENVRKHRENNKYFLVLTLRHRRNRKRPYRNILNLKRISRPGLRIYSNYQRIPRILGGMGIVILSTSRGIMTDREARLEGIGGEILCYIW 134          
BLAST of CX295334 vs. ExPASy Swiss-Prot
Match: RR8_DAUCA (30S ribosomal protein S8, chloroplastic OS=Daucus carota GN=rps8 PE=3 SV=1)

HSP 1 Score: 200.675 bits (509), Expect = 6.073e-51
Identity = 101/120 (84.17%), Postives = 107/120 (89.17%), Query Frame = -2
Query:  324 NADMNRKGTVRIASTNITENVVKILLREGFIENARKLVENKKEFLVLTLRHRRNRKGPYRPILNLKRISRPGLRIYFNYRRIPRILDGMGIVILSTSRGIMTDRAARLERIGGEILCYIW 683
            NADM+RK  VRIASTNITEN+VKILLREGFIEN RK  E KK+FLVLTLRHRRNRK  YR  LNLKRISRPGLRIY NY+RIPRIL GMGIVI+STSRGIMTDR ARLERIGGE+LCYIW
Sbjct:   15 NADMDRKRAVRIASTNITENIVKILLREGFIENVRKHKETKKDFLVLTLRHRRNRKRSYRNFLNLKRISRPGLRIYSNYQRIPRILGGMGIVIISTSRGIMTDREARLERIGGEVLCYIW 134          
BLAST of CX295334 vs. ExPASy Swiss-Prot
Match: RR8_SOLBU (30S ribosomal protein S8, chloroplastic OS=Solanum bulbocastanum GN=rps8 PE=3 SV=1)

HSP 1 Score: 200.29 bits (508), Expect = 7.932e-51
Identity = 102/120 (85.00%), Postives = 107/120 (89.17%), Query Frame = -2
Query:  324 NADMNRKGTVRIASTNITENVVKILLREGFIENARKLVENKKEFLVLTLRHRRNRKGPYRPILNLKRISRPGLRIYFNYRRIPRILDGMGIVILSTSRGIMTDRAARLERIGGEILCYIW 683
            NADM+RK  VRIASTNITEN+++ILLREGFIEN RK  EN K FLVLTLRHRRNRK PYR ILNLKRISRPGLRIY NY+RIPRIL GMGIVILSTSRGIMTDR ARLE IGGEILCYIW
Sbjct:   15 NADMDRKRVVRIASTNITENIIQILLREGFIENVRKHRENNKYFLVLTLRHRRNRKRPYRNILNLKRISRPGLRIYSNYQRIPRILGGMGIVILSTSRGIMTDREARLEGIGGEILCYIW 134          
BLAST of CX295334 vs. ExPASy Swiss-Prot
Match: RR8_HELAN (30S ribosomal protein S8, chloroplastic OS=Helianthus annuus GN=rps8 PE=3 SV=1)

HSP 1 Score: 199.904 bits (507), Expect = 1.036e-50
Identity = 99/120 (82.50%), Postives = 108/120 (90.00%), Query Frame = -2
Query:  324 NADMNRKGTVRIASTNITENVVKILLREGFIENARKLVENKKEFLVLTLRHRRNRKGPYRPILNLKRISRPGLRIYFNYRRIPRILDGMGIVILSTSRGIMTDRAARLERIGGEILCYIW 683
            NADM RK  VR+ASTNI++++VKILLREGFIEN RK  EN K+FLVLTLRHRRNRK PYR +LNLKRISRPGLRIY NY+RIPRIL GMG+VILSTSRGIMTDR ARLERIGGEILCYIW
Sbjct:   15 NADMYRKSVVRVASTNISQSIVKILLREGFIENVRKHRENNKDFLVLTLRHRRNRKRPYRNLLNLKRISRPGLRIYSNYQRIPRILGGMGVVILSTSRGIMTDREARLERIGGEILCYIW 134          
The following BLAST results are available for this feature:
BLAST of CX295334 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RR8_CITSI3.795e-6198.3630S ribosomal protein S8, chloroplastic OS=Citrus ... [more]
RR8_EUCGG1.307e-5387.5030S ribosomal protein S8, chloroplastic OS=Eucalyp... [more]
RR8_PANGI1.107e-5287.5030S ribosomal protein S8, chloroplastic OS=Panax g... [more]
RR8_VITVI7.174e-5286.6730S ribosomal protein S8, chloroplastic OS=Vitis v... [more]
RR8_CUCSA4.650e-5183.3330S ribosomal protein S8, chloroplastic OS=Cucumis... [more]
RR8_SOLTU6.073e-5185.8330S ribosomal protein S8, chloroplastic OS=Solanum... [more]
RR8_SOLLC6.073e-5185.8330S ribosomal protein S8, chloroplastic OS=Solanum... [more]
RR8_DAUCA6.073e-5184.1730S ribosomal protein S8, chloroplastic OS=Daucus ... [more]
RR8_SOLBU7.932e-5185.0030S ribosomal protein S8, chloroplastic OS=Solanum... [more]
RR8_HELAN1.036e-5082.5030S ribosomal protein S8, chloroplastic OS=Heliant... [more]

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Properties
Property NameValue
Genbank descriptionC05071B04SK PhIFruit1 Citrus clementina cDNA clone C05071B04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295334 ID=CX295334; Name=CX295334; organism=Citrus clementina; type=EST; length=684bp
AAAGGAATGTTGAAAAATCACCTAATCACTCAAATCCTTTTGTCTAGTCT
ATATATTATTATTATATCCTCCAGTTGAATCTGAATCATAACGACTTCCT
TCAATTTTGCCTCTAGCCACCGGGAGTAGATGTAGAAAAACGGGTCGCAT
CCCTCCTGAAACATAATCTAGAATCTTACTTCGCTCTCTAAACTATCTAA
AAGAACCCGGAGCATACCTTTGGTAAGTTATTCGGTAATTAAACCTCGAG
GAATCCTCCCCTTTTTTTTTTTCTCACAACATAAAAGTAAGCTCCAAATA
CAATTCGGATAGCAGAATAATTACCATATATAACACAAAATTTCTCCACC
GATTCTTTCCAGTCGAGCCGCTCGGTCTGTCATTATACCCCGAGAAGTAG
AGAGAATTACAATCCCCATCCCATCTAAAATTCTAGGAATTCGTCGATAG
TTAAAATAGATTCGTAGACCGGGTCGACTGATTCGTTTTAAATTTAAAAT
GGGTCTATACGGCCCTTTCCTATTCCTTCGATGTCGTAGGGTTAAAACCA
AAAACTCTTTTTTGTTTTCCACGAGTTTCCTTGCGTTTTCGATAAAACCC
TCTCGCAAAAGGATTTTAACAACGTTTTCGGTGATGTTAGTAGATGCTAT
TCGAACCGTTCCCTTTCTATTCATGTCAGCATTT
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