CX295337

Overview
NameCX295337
Unique NameCX295337
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length721
Libraries
Library NameType
PhIFruit1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig11233 contig Ccv1_Contig11233:199..920. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX295337 vs. ExPASy Swiss-Prot
Match: BH049_ARATH (Transcription factor bHLH49 OS=Arabidopsis thaliana GN=BHLH49 PE=2 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 1.170e-30
Identity = 76/129 (58.91%), Postives = 95/129 (73.64%), Query Frame = 1
Query:  295 RKNRTNASSSFNSAQSKDPREVKSKKQKKGNVNDAKKEEKE-NSP--KADSEKKVAKE---PPKD-YIHVRARRGQATDSHSLAERVRREKISERMKILQKLVPGCDKVTGKAFMLDEIINYVQFLQNQ 660
            +K + N   +  +AQS   R  +S+++   N ++ + +E+  NSP  K++S K+  K+   PPKD YIHVRARRGQAT+SHSLAERVRREKISERMK LQ LVPGC+KVTGKA MLDEIINYVQ LQ Q
Sbjct:  236 KKRKRNGQKNSEAAQSH--RSQQSEEEPDNNGDEKRNDEQSPNSPGKKSNSGKQQGKQSSDPPKDGYIHVRARRGQATNSHSLAERVRREKISERMKFLQDLVPGCNKVTGKAVMLDEIINYVQSLQRQ 362          

HSP 2 Score: 23.8682 bits (50), Expect = 1.170e-30
Identity = 11/17 (64.71%), Postives = 13/17 (76.47%), Query Frame = 3
Query:  648 LTKPVEFPLMKLASVNP 698
            L + VEF  MKLA+VNP
Sbjct:  359 LQRQVEFLSMKLATVNP 375          
BLAST of CX295337 vs. ExPASy Swiss-Prot
Match: BH062_ARATH (Transcription factor bHLH62 OS=Arabidopsis thaliana GN=BHLH62 PE=2 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 1.525e-30
Identity = 75/119 (63.03%), Postives = 89/119 (74.79%), Query Frame = 1
Query:  328 NSAQSKDPREVKSKKQKKGNVNDAKK-EEKENS-PKA------DSEKKVAKEPPKDYIHVRARRGQATDSHSLAERVRREKISERMKILQKLVPGCDKVTGKAFMLDEIINYVQFLQNQ 660
            +S +    R+ KSK+     V+ +K+ EEKE+S PK       + +K  + +P KDYIHVRARRGQATDSHSLAERVRREKISERMK+LQ LVPGC+KVTGKA MLDEIINYVQ LQ Q
Sbjct:  199 SSGELSRKRKTKSKQNSPSAVSSSKEIEEKEDSDPKRCKKSEENGDKTKSIDPYKDYIHVRARRGQATDSHSLAERVRREKISERMKLLQDLVPGCNKVTGKALMLDEIINYVQSLQRQ 317          

HSP 2 Score: 21.1718 bits (43), Expect = 1.525e-30
Identity = 10/16 (62.50%), Postives = 12/16 (75.00%), Query Frame = 3
Query:  648 LTKPVEFPLMKLASVN 695
            L + VEF  MKL+SVN
Sbjct:  314 LQRQVEFLSMKLSSVN 329          
BLAST of CX295337 vs. ExPASy Swiss-Prot
Match: BPE_ARATH (Transcription factor BPE OS=Arabidopsis thaliana GN=BPE PE=2 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 2.920e-30
Identity = 72/121 (59.50%), Postives = 84/121 (69.42%), Query Frame = 1
Query:  298 KNRTNASSSFNSAQSKDPREVKSKKQKKGNVNDAKKEEKENSPKADSEKKVAKEPPKDYIHVRARRGQATDSHSLAERVRREKISERMKILQKLVPGCDKVTGKAFMLDEIINYVQFLQNQ 660
            K R + S S     +    E ++K+QK   V D K E +    + + +KK   EP KDYIHVRARRGQATDSHSLAER RREKISERMKILQ LVPGC+KV GKA +LDEIINY+Q LQ Q
Sbjct:   76 KRREDESKSAKIVSTIGASEGENKRQKIDEVCDGKAEAESLGTETE-QKKQQMEPTKDYIHVRARRGQATDSHSLAERARREKISERMKILQDLVPGCNKVIGKALVLDEIINYIQSLQRQ 195          
BLAST of CX295337 vs. ExPASy Swiss-Prot
Match: BH077_ARATH (Transcription factor bHLH77 OS=Arabidopsis thaliana GN=BHLH77 PE=2 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 3.377e-30
Identity = 74/121 (61.16%), Postives = 82/121 (67.77%), Query Frame = 1
Query:  313 ASSSFNSAQSKDPREVKSKKQKKGNVNDAKKEEKENSPKADSE---KKVAKEP--PKDYIHVRARRGQATDSHSLAERVRREKISERMKILQKLVPGCDKVTGKAFMLDEIINYVQFLQNQ 660
            ASSS  ++ SK   E    K  K +  D     K    K DS+   K  AK P  PKDYIHVRARRGQATDSHSLAER RREKISERM +LQ LVPGC+++TGKA MLDEIINYVQ LQ Q
Sbjct:  130 ASSSLTASNSKVSGENGGSKGGKRSKQDVAGSSKNGVEKCDSKGDNKDDAKPPEAPKDYIHVRARRGQATDSHSLAERARREKISERMTLLQDLVPGCNRITGKAVMLDEIINYVQSLQRQ 250          

HSP 2 Score: 23.8682 bits (50), Expect = 3.377e-30
Identity = 11/17 (64.71%), Postives = 13/17 (76.47%), Query Frame = 3
Query:  648 LTKPVEFPLMKLASVNP 698
            L + VEF  MKLA+VNP
Sbjct:  247 LQRQVEFLSMKLATVNP 263          
BLAST of CX295337 vs. ExPASy Swiss-Prot
Match: BH078_ARATH (Transcription factor bHLH78 OS=Arabidopsis thaliana GN=BHLH78 PE=2 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 4.377e-30
Identity = 68/102 (66.67%), Postives = 80/102 (78.43%), Query Frame = 1
Query:  355 EVKSKKQKKGNVNDAKKEEKENSPKADSEKKVAKEPPKDYIHVRARRGQATDSHSLAERVRREKISERMKILQKLVPGCDKVTGKAFMLDEIINYVQFLQNQ 660
            E K  K+++   +D ++E +    K+++ K    EPPKDYIHVRARRGQATDSHSLAERVRREKI ERMK+LQ LVPGC+KVTGKA MLDEIINYVQ LQ Q
Sbjct:  261 EEKGGKRRREEEDDEEEEGEGEGNKSNNTKP--PEPPKDYIHVRARRGQATDSHSLAERVRREKIGERMKLLQDLVPGCNKVTGKALMLDEIINYVQSLQRQ 360          

HSP 2 Score: 21.1718 bits (43), Expect = 4.377e-30
Identity = 10/16 (62.50%), Postives = 12/16 (75.00%), Query Frame = 3
Query:  648 LTKPVEFPLMKLASVN 695
            L + VEF  MKL+SVN
Sbjct:  357 LQRQVEFLSMKLSSVN 372          
BLAST of CX295337 vs. ExPASy Swiss-Prot
Match: BH137_ARATH (Transcription factor bHLH137 OS=Arabidopsis thaliana GN=BHLH137 PE=2 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 4.980e-30
Identity = 77/126 (61.11%), Postives = 89/126 (70.63%), Query Frame = 1
Query:  298 KNRTNASSSFNSAQSKDPREV----KSKKQKKGNVNDAKKEEKENSPKADSEKKVAKE-PPKDYIHVRARRGQATDSHSLAERVRREKISERMKILQKLVPGCDKVTGKAFMLDEIINYVQFLQNQ 660
            K  T  SSS +   S  P  +    K++ +K  N N++K  E     K+  +K+ +KE PP DYIHVRARRGQATDSHSLAERVRREKISERM+ LQ LVPGCDKVTGKA MLDEIINYVQ LQ Q
Sbjct:   73 KTATTGSSSCDQL-SHGPSAITNTGKTRGRKARNSNNSK--EGVEGRKSKKQKRGSKEEPPTDYIHVRARRGQATDSHSLAERVRREKISERMRTLQNLVPGCDKVTGKALMLDEIINYVQTLQTQ 195          
BLAST of CX295337 vs. ExPASy Swiss-Prot
Match: BH063_ARATH (Transcription factor bHLH63 OS=Arabidopsis thaliana GN=BHLH63 PE=2 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 2.794e-29
Identity = 73/130 (56.15%), Postives = 86/130 (66.15%), Query Frame = 1
Query:  286 DKKRKNRTNASSSFNSAQSKDPREVKSKKQKKGNVNDAKK----EEKENSPKADSEKKVAKEPPK-DYIHVRARRGQATDSHSLAERVRREKISERMKILQKLVPGCDKVTGKAFMLDEIINYVQFLQNQ 660
            +KK+K   N        + +   + K  +Q  G+    KK     +KE +  ++   KV KE  K DYIHVRARRGQATDSHS+AERVRREKISERMK LQ LVPGCDK+TGKA MLDEIINYVQ LQ Q
Sbjct:  105 EKKKKMTMNRDDLVEEGEEE---KSKITEQNNGSTKSIKKMKHKAKKEENNFSNDSSKVTKELEKTDYIHVRARRGQATDSHSIAERVRREKISERMKFLQDLVPGCDKITGKAGMLDEIINYVQSLQRQ 231          

HSP 2 Score: 22.3274 bits (46), Expect = 2.794e-29
Identity = 10/17 (58.82%), Postives = 12/17 (70.59%), Query Frame = 3
Query:  648 LTKPVEFPLMKLASVNP 698
            L + +EF  MKLA VNP
Sbjct:  228 LQRQIEFLSMKLAIVNP 244          
BLAST of CX295337 vs. ExPASy Swiss-Prot
Match: BH074_ARATH (Transcription factor bHLH74 OS=Arabidopsis thaliana GN=BHLH74 PE=2 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 5.082e-28
Identity = 66/107 (61.68%), Postives = 81/107 (75.70%), Query Frame = 1
Query:  343 KDPREVKSKKQKKGNVNDAKKEEKENSPKADSEKKVAKEPPKD-YIHVRARRGQATDSHSLAERVRREKISERMKILQKLVPGCDKVTGKAFMLDEIINYVQFLQNQ 660
            +DP+    + QKK + ND  KE        + E   ++E PK+ YIH+RARRGQAT+SHSLAERVRREKISERM++LQ+LVPGC+K+TGKA MLDEIINYVQ LQ Q
Sbjct:  166 EDPQRGNDQSQKK-HKNDQSKET------VNKESSQSEEAPKENYIHMRARRGQATNSHSLAERVRREKISERMRLLQELVPGCNKITGKAVMLDEIINYVQSLQQQ 265          

HSP 2 Score: 23.483 bits (49), Expect = 5.082e-28
Identity = 11/17 (64.71%), Postives = 13/17 (76.47%), Query Frame = 3
Query:  648 LTKPVEFPLMKLASVNP 698
            L + VEF  MKLA+VNP
Sbjct:  262 LQQQVEFLSMKLATVNP 278          
BLAST of CX295337 vs. ExPASy Swiss-Prot
Match: BH076_ARATH (Transcription factor bHLH76 OS=Arabidopsis thaliana GN=BHLH76 PE=2 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 6.609e-28
Identity = 70/115 (60.87%), Postives = 79/115 (68.70%), Query Frame = 1
Query:  316 SSSFNSAQSKDPREVKSKKQKKGNVNDAKKEEKENSPKADSEKKVAKEPPKDYIHVRARRGQATDSHSLAERVRREKISERMKILQKLVPGCDKVTGKAFMLDEIINYVQFLQNQ 660
            SS       KD  E + KKQK       ++    N+ K +SEK+ +      YIH+RARRGQAT+SHSLAERVRREKISERMK LQ LVPGCDKVTGKA MLDEIINYVQ LQ Q
Sbjct:  174 SSKKRKRIGKDCEEEEDKKQKD------EQSPTSNANKTNSEKQPSDSLKDGYIHMRARRGQATNSHSLAERVRREKISERMKFLQDLVPGCDKVTGKAVMLDEIINYVQSLQCQ 282          

HSP 2 Score: 21.1718 bits (43), Expect = 6.609e-28
Identity = 8/14 (57.14%), Postives = 12/14 (85.71%), Query Frame = 3
Query:  660 VEFPLMKLASVNPM 701
            +EF  MKL++VNP+
Sbjct:  283 IEFLSMKLSAVNPV 296          
BLAST of CX295337 vs. ExPASy Swiss-Prot
Match: BH079_ARATH (Transcription factor bHLH79 OS=Arabidopsis thaliana GN=BHLH79 PE=2 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 3.946e-27
Identity = 64/121 (52.89%), Postives = 82/121 (67.77%), Query Frame = 1
Query:  310 NASSSFNSAQSKDPREVKSKKQKKGNVNDAKKEEKENSPKAD----SEKKVAKEPPKDYIHVRARRGQATDSHSLAERVRREKISERMKILQKLVPGCDKVTGKAFMLDEIINYVQFLQNQ 660
            ++SSS N  +    ++ K    + GN + + + E E S        +E+K   EPPKDYIHVRARRGQATD HSLAER RREKISE+M  LQ ++PGC+K+ GKA +LDEIINY+Q LQ Q
Sbjct:   92 SSSSSGNELKESGDKKRKLCGSESGNGDGSMRPEGETSSGGGGSKATEQKNKPEPPKDYIHVRARRGQATDRHSLAERARREKISEKMTALQDIIPGCNKIIGKALVLDEIINYIQSLQRQ 212          
The following BLAST results are available for this feature:
BLAST of CX295337 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 23
Match NameE-valueIdentityDescription
BH049_ARATH1.170e-3058.91Transcription factor bHLH49 OS=Arabidopsis thalian... [more]
BH062_ARATH1.525e-3063.03Transcription factor bHLH62 OS=Arabidopsis thalian... [more]
BPE_ARATH2.920e-3059.50Transcription factor BPE OS=Arabidopsis thaliana G... [more]
BH077_ARATH3.377e-3061.16Transcription factor bHLH77 OS=Arabidopsis thalian... [more]
BH078_ARATH4.377e-3066.67Transcription factor bHLH78 OS=Arabidopsis thalian... [more]
BH137_ARATH4.980e-3061.11Transcription factor bHLH137 OS=Arabidopsis thalia... [more]
BH063_ARATH2.794e-2956.15Transcription factor bHLH63 OS=Arabidopsis thalian... [more]
BH074_ARATH5.082e-2861.68Transcription factor bHLH74 OS=Arabidopsis thalian... [more]
BH076_ARATH6.609e-2860.87Transcription factor bHLH76 OS=Arabidopsis thalian... [more]
BH079_ARATH3.946e-2752.89Transcription factor bHLH79 OS=Arabidopsis thalian... [more]

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Properties
Property NameValue
Genbank descriptionC05071B07SK PhIFruit1 Citrus clementina cDNA clone C05071B07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295337 ID=CX295337; Name=CX295337; organism=Citrus clementina; type=EST; length=721bp
GAAGGCAGTTTTTTCTCTCAACTTTATTACCCACCAAAATTTCCTACTCA
TGATGATCATCAAGAGATGATTGTTGTTAATAATAACAGCAATAATCTTC
TTGATGCAGCTGCAGTTTTTGAAACTAGCTGTGGTGACAATCATGATCAT
CACAGTGATGATAATTGTAATGAGCCTTCTAATAATAATTCTTTAGCCAC
CAAAAACCAAAGCACTGCAGTGTCTTCAACTGAGCAGCAGGTCACTCAGA
GTACTGTGACGACTACCGCTACTACTACTCGTATGGACAAGAAAAGGAAG
AACAGAACTAATGCTTCCTCTTCTTTCAATTCTGCTCAGTCAAAGGATCC
AAGAGAAGTGAAAAGCAAGAAGCAAAAGAAAGGCAATGTTAATGATGCCA
AGAAAGAAGAAAAGGAAAATAGTCCTAAAGCTGATAGTGAGAAGAAAGTT
GCTAAAGAACCTCCAAAAGATTACATTCATGTTAGAGCAAGGAGGGGTCA
AGCAACTGACAGCCACAGCTTAGCAGAAAGGGTAAGAAGAGAGAAAATTA
GTGAGAGGATGAAAATTTTGCAAAAGCTTGTTCCTGGCTGTGACAAGGTA
ACTGGTAAGGCCTTCATGTTGGATGAAATTATCAACTATGTACAGTTCTT
ACAAAACCAGTGGAGTTCCCTCTCATGAAGCTTGCTTCTGTGAATCCCAT
GTCTATGATTTTGGAATGGAC
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