CX295347

Overview
NameCX295347
Unique NameCX295347
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length654
Libraries
Library NameType
PhIFruit1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14139 contig Ccv1_Contig14139:546..1199. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CX295347 vs. ExPASy Swiss-Prot
Match: UGDH_SOYBN (UDP-glucose 6-dehydrogenase OS=Glycine max PE=2 SV=1)

HSP 1 Score: 410.609 bits (1054), Expect = 3.608e-114
Identity = 201/214 (93.93%), Postives = 210/214 (98.13%), Query Frame = 1 
Query:   13 GTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDRILTTNLWSAELSKLAANAFLAQRISSVNAMSALCEATGANVSQVAFAVGTDSRIGPKFLNASVGFGGSCFQKDILNLVYICECNGLPEVAEYWKQVIKINDYQKSRFVNRVVASMFNTVSNKKIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKARLSIYDPQVTEDQIQRD 654
            GTAI+DLFNPDRVLIGGRETPEGQKA++ LKDVYA WVPE+RILTTNLWSAELSKLAANAFLAQRISSVNAMSALCEATGANV QV+++VGTDSRIGPKFLNASVGFGGSCFQKDILNLVYICECNGLPEVAEYWKQVIKINDYQKSRFVNRVVASMFNTVSNKKIA+LGFAFKKDTGDTRETPAIDVC+GLLGDKA LSIYDPQVTEDQIQRD
Sbjct:  162 GTAIKDLFNPDRVLIGGRETPEGQKAIQTLKDVYAQWVPEERILTTNLWSAELSKLAANAFLAQRISSVNAMSALCEATGANVQQVSYSVGTDSRIGPKFLNASVGFGGSCFQKDILNLVYICECNGLPEVAEYWKQVIKINDYQKSRFVNRVVASMFNTVSNKKIAILGFAFKKDTGDTRETPAIDVCQGLLGDKANLSIYDPQVTEDQIQRD 375
[Close]
BLAST of CX295347 vs. ExPASy Swiss-Prot
Match: UGDH1_ARATH (Probable UDP-glucose 6-dehydrogenase 1 OS=Arabidopsis thaliana GN=UGD1 PE=1 SV=1)

HSP 1 Score: 402.134 bits (1032), Expect = 1.283e-111
Identity = 198/214 (92.52%), Postives = 210/214 (98.13%), Query Frame = 1 
Query:   13 GTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDRILTTNLWSAELSKLAANAFLAQRISSVNAMSALCEATGANVSQVAFAVGTDSRIGPKFLNASVGFGGSCFQKDILNLVYICECNGLPEVAEYWKQVIKINDYQKSRFVNRVVASMFNTVSNKKIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKARLSIYDPQVTEDQIQRD 654
            GTAI+DLFNPDRVLIGGRETPEG KAV+ LK+VYAHWVPE +I+TTNLWSAELSKLAANAFLAQRISSVNAMSALCEATGA+V+QV++AVGTDSRIGPKFLN+SVGFGGSCFQKDILNLVYICECNGLPEVAEYWKQVIKINDYQKSRFVNRVV+SMFN+VSNKKIAVLGFAFKKDTGDTRETPAIDVCKGLL DKARLSIYDPQVTEDQIQRD
Sbjct:  162 GTAIKDLFNPDRVLIGGRETPEGFKAVQTLKNVYAHWVPEGQIITTNLWSAELSKLAANAFLAQRISSVNAMSALCEATGADVTQVSYAVGTDSRIGPKFLNSSVGFGGSCFQKDILNLVYICECNGLPEVAEYWKQVIKINDYQKSRFVNRVVSSMFNSVSNKKIAVLGFAFKKDTGDTRETPAIDVCKGLLEDKARLSIYDPQVTEDQIQRD 375
[Close]
BLAST of CX295347 vs. ExPASy Swiss-Prot
Match: UGDH2_ARATH (Probable UDP-glucose 6-dehydrogenase 2 OS=Arabidopsis thaliana GN=UGD2 PE=2 SV=1)

HSP 1 Score: 393.275 bits (1009), Expect = 5.961e-109
Identity = 190/214 (88.79%), Postives = 209/214 (97.66%), Query Frame = 1 
Query:   13 GTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDRILTTNLWSAELSKLAANAFLAQRISSVNAMSALCEATGANVSQVAFAVGTDSRIGPKFLNASVGFGGSCFQKDILNLVYICECNGLPEVAEYWKQVIKINDYQKSRFVNRVVASMFNTVSNKKIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKARLSIYDPQVTEDQIQRD 654
            GTAI DLFNPDRVLIGGRETPEG KAV+ LK+VYA+WVPE +I+TTNLWSAELSKLAANAFLAQRISSVNAMSALCE+TGA+V+QV++AVGTDSRIG KFLNASVGFGGSCFQKDILNLVYIC+CNGLPEVAEYWKQVIKINDYQK+RFVNR+V+SMFNTVSNKK+A+LGFAFKKDTGDTRETPAIDVCKGLLGDKA++SIYDPQVTE+QIQRD
Sbjct:  162 GTAIADLFNPDRVLIGGRETPEGFKAVQTLKEVYANWVPEGQIITTNLWSAELSKLAANAFLAQRISSVNAMSALCESTGADVTQVSYAVGTDSRIGSKFLNASVGFGGSCFQKDILNLVYICQCNGLPEVAEYWKQVIKINDYQKNRFVNRIVSSMFNTVSNKKVAILGFAFKKDTGDTRETPAIDVCKGLLGDKAQISIYDPQVTEEQIQRD 375
[Close]
BLAST of CX295347 vs. ExPASy Swiss-Prot
Match: UGDH_CHICK (UDP-glucose 6-dehydrogenase OS=Gallus gallus GN=UGDH PE=2 SV=1)

HSP 1 Score: 311.227 bits (796), Expect = 2.979e-84
Identity = 150/214 (70.09%), Postives = 185/214 (86.45%), Query Frame = 1 
Query:   13 GTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDRILTTNLWSAELSKLAANAFLAQRISSVNAMSALCEATGANVSQVAFAVGTDSRIGPKFLNASVGFGGSCFQKDILNLVYICECNGLPEVAEYWKQVIKINDYQKSRFVNRVVASMFNTVSNKKIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKARLSIYDPQVTEDQIQRD 654
            GTAI+DL NPDRVLIGG ++PEGQKAV+AL  VY HWVP+++ILTTN WS+ELSKLAANAFLAQRISS+N++SALCEATGA+V +VA A+GTD RIG KFL ASVGFGGSCFQKD+LNLVY+CE   LPEVA YW+QVI +NDYQ+ RF +R++ S+FNTV++KKIA+LGFAFKKDTGDTRE+ +I + K L+ + A+L IYDP+V ++QI  D
Sbjct:  166 GTAIKDLKNPDRVLIGGDDSPEGQKAVRALCAVYEHWVPKEKILTTNTWSSELSKLAANAFLAQRISSINSISALCEATGADVEEVARAIGTDQRIGNKFLKASVGFGGSCFQKDVLNLVYLCEALNLPEVARYWQQVIDMNDYQRRRFASRIIDSLFNTVTDKKIAILGFAFKKDTGDTRESSSIYISKYLMDEGAKLHIYDPKVPKEQIILD 379
[Close]
BLAST of CX295347 vs. ExPASy Swiss-Prot
Match: UGDH_MOUSE (UDP-glucose 6-dehydrogenase OS=Mus musculus GN=Ugdh PE=1 SV=1)

HSP 1 Score: 310.842 bits (795), Expect = 3.891e-84
Identity = 151/214 (70.56%), Postives = 182/214 (85.05%), Query Frame = 1 
Query:   13 GTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDRILTTNLWSAELSKLAANAFLAQRISSVNAMSALCEATGANVSQVAFAVGTDSRIGPKFLNASVGFGGSCFQKDILNLVYICECNGLPEVAEYWKQVIKINDYQKSRFVNRVVASMFNTVSNKKIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKARLSIYDPQVTEDQIQRD 654
            GTAI+DL NPDRVLIGG ETPEGQKAV+AL  VY HWVP+++ILTTN WS+ELSKLAANAFLAQRISS+N++SALCEATGA+V +VA A+G D RIG KFL ASVGFGGSCFQKD+LNLVY+CE   LPEVA YW+QVI +NDYQ+ RF +R++ S+FNTV++KKIA+LGFAFKKDTGDTRE+ +I + K L+ + A L IYDP+V  +QI  D
Sbjct:  166 GTAIKDLKNPDRVLIGGDETPEGQKAVRALCAVYEHWVPKEKILTTNTWSSELSKLAANAFLAQRISSINSISALCEATGADVEEVATAIGMDQRIGNKFLKASVGFGGSCFQKDVLNLVYLCEALNLPEVARYWQQVIDMNDYQRRRFASRIIDSLFNTVTDKKIAILGFAFKKDTGDTRESSSIYISKYLMDEGAHLHIYDPKVPREQIVVD 379
[Close]
BLAST of CX295347 vs. ExPASy Swiss-Prot
Match: UGDH_PONAB (UDP-glucose 6-dehydrogenase OS=Pongo abelii GN=UGDH PE=2 SV=1)

HSP 1 Score: 308.916 bits (790), Expect = 1.478e-83
Identity = 150/214 (70.09%), Postives = 181/214 (84.58%), Query Frame = 1 
Query:   13 GTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDRILTTNLWSAELSKLAANAFLAQRISSVNAMSALCEATGANVSQVAFAVGTDSRIGPKFLNASVGFGGSCFQKDILNLVYICECNGLPEVAEYWKQVIKINDYQKSRFVNRVVASMFNTVSNKKIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKARLSIYDPQVTEDQIQRD 654
            GTAI+DL NPDRVLIGG ETPEGQ+AV+AL  VY HWVP ++ILTTN WS+ELSKLAANAFLAQRISS+N++SALCEATGA+V +VA A+G D RIG KFL ASVGFGGSCFQKD+LNLVY+CE   LPEVA YW+QVI +NDYQ+ RF +R++ S+FNTV++KKIA+LGFAFKKDTGDTRE+ +I + K L+ + A L IYDP+V  +QI  D
Sbjct:  166 GTAIKDLKNPDRVLIGGDETPEGQRAVQALCAVYEHWVPREKILTTNTWSSELSKLAANAFLAQRISSINSISALCEATGADVEEVATAIGMDQRIGNKFLKASVGFGGSCFQKDVLNLVYLCEALNLPEVARYWQQVIDMNDYQRRRFASRIIDSLFNTVTDKKIAILGFAFKKDTGDTRESSSIYISKYLMDEGAHLHIYDPKVPREQIVVD 379
[Close]
BLAST of CX295347 vs. ExPASy Swiss-Prot
Match: UGDH_HUMAN (UDP-glucose 6-dehydrogenase OS=Homo sapiens GN=UGDH PE=1 SV=1)

HSP 1 Score: 308.916 bits (790), Expect = 1.478e-83
Identity = 150/214 (70.09%), Postives = 181/214 (84.58%), Query Frame = 1 
Query:   13 GTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDRILTTNLWSAELSKLAANAFLAQRISSVNAMSALCEATGANVSQVAFAVGTDSRIGPKFLNASVGFGGSCFQKDILNLVYICECNGLPEVAEYWKQVIKINDYQKSRFVNRVVASMFNTVSNKKIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKARLSIYDPQVTEDQIQRD 654
            GTAI+DL NPDRVLIGG ETPEGQ+AV+AL  VY HWVP ++ILTTN WS+ELSKLAANAFLAQRISS+N++SALCEATGA+V +VA A+G D RIG KFL ASVGFGGSCFQKD+LNLVY+CE   LPEVA YW+QVI +NDYQ+ RF +R++ S+FNTV++KKIA+LGFAFKKDTGDTRE+ +I + K L+ + A L IYDP+V  +QI  D
Sbjct:  166 GTAIKDLKNPDRVLIGGDETPEGQRAVQALCAVYEHWVPREKILTTNTWSSELSKLAANAFLAQRISSINSISALCEATGADVEEVATAIGMDQRIGNKFLKASVGFGGSCFQKDVLNLVYLCEALNLPEVARYWQQVIDMNDYQRRRFASRIIDSLFNTVTDKKIAILGFAFKKDTGDTRESSSIYISKYLMDEGAHLHIYDPKVPREQIVVD 379
[Close]
BLAST of CX295347 vs. ExPASy Swiss-Prot
Match: UGDH_BOVIN (UDP-glucose 6-dehydrogenase OS=Bos taurus GN=UGDH PE=1 SV=2)

HSP 1 Score: 307.375 bits (786), Expect = 4.302e-83
Identity = 149/214 (69.63%), Postives = 180/214 (84.11%), Query Frame = 1 
Query:   13 GTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDRILTTNLWSAELSKLAANAFLAQRISSVNAMSALCEATGANVSQVAFAVGTDSRIGPKFLNASVGFGGSCFQKDILNLVYICECNGLPEVAEYWKQVIKINDYQKSRFVNRVVASMFNTVSNKKIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKARLSIYDPQVTEDQIQRD 654
            GTAI+DL NPDRVLIGG ETPEGQ+AV+AL  VY HWVP ++ILTTN WS+ELSKL ANAFLAQRISS+N++SALCEATGA+V +VA A+G D RIG KFL ASVGFGGSCFQKD+LNLVY+CE   LPEVA YW+QVI +NDYQ+ RF +R++ S+FNTV++KKIA+LGFAFKKDTGDTRE+ +I + K L+ + A L IYDP+V  +QI  D
Sbjct:  166 GTAIKDLKNPDRVLIGGDETPEGQRAVQALCAVYEHWVPREKILTTNTWSSELSKLTANAFLAQRISSINSISALCEATGADVEEVATAIGMDQRIGNKFLKASVGFGGSCFQKDVLNLVYLCEALNLPEVARYWQQVIDMNDYQRRRFASRIIDSLFNTVTDKKIAILGFAFKKDTGDTRESSSIYISKYLMDEGAHLHIYDPKVPREQIVVD 379
[Close]
BLAST of CX295347 vs. ExPASy Swiss-Prot
Match: UGDH_RAT (UDP-glucose 6-dehydrogenase OS=Rattus norvegicus GN=Ugdh PE=1 SV=1)

HSP 1 Score: 306.605 bits (784), Expect = 7.337e-83
Identity = 148/214 (69.16%), Postives = 181/214 (84.58%), Query Frame = 1 
Query:   13 GTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDRILTTNLWSAELSKLAANAFLAQRISSVNAMSALCEATGANVSQVAFAVGTDSRIGPKFLNASVGFGGSCFQKDILNLVYICECNGLPEVAEYWKQVIKINDYQKSRFVNRVVASMFNTVSNKKIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKARLSIYDPQVTEDQIQRD 654
            GTAI+DL NPDRVLIGG ETPEGQ+AV+AL  VY HWVP+++ILTTN WS+ELSKLAANAFLAQRISS+N++SALCE+TGA+V +VA A+G D RIG KFL ASVGFGG CFQKD+LNLVY+CE   LPEVA YW+QVI +NDYQ+ RF +R++ S+FNTV++KKIA+LGFAFKKDTGDTRE+ +I + K L+ + A L IYDP+V  +QI  D
Sbjct:  166 GTAIKDLKNPDRVLIGGDETPEGQRAVQALCAVYEHWVPKEKILTTNTWSSELSKLAANAFLAQRISSINSISALCESTGADVEEVATAIGMDQRIGNKFLKASVGFGGGCFQKDVLNLVYLCEALNLPEVARYWQQVIDMNDYQRRRFASRIIDSLFNTVTDKKIAILGFAFKKDTGDTRESSSIYISKYLMDEGAHLHIYDPKVPREQIVVD 379
[Close]
BLAST of CX295347 vs. ExPASy Swiss-Prot
Match: UGDH_DROME (UDP-glucose 6-dehydrogenase OS=Drosophila melanogaster GN=sgl PE=2 SV=1)

HSP 1 Score: 305.834 bits (782), Expect = 1.252e-82
Identity = 150/214 (70.09%), Postives = 178/214 (83.18%), Query Frame = 1 
Query:   13 GTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDRILTTNLWSAELSKLAANAFLAQRISSVNAMSALCEATGANVSQVAFAVGTDSRIGPKFLNASVGFGGSCFQKDILNLVYICECNGLPEVAEYWKQVIKINDYQKSRFVNRVVASMFNTVSNKKIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKARLSIYDPQVTEDQIQRD 654
            GTAI DL N DRVLIGG ETPEG +AV+ L  +Y HW+P+  ILTTN WS+ELSKLAANAFLAQRISS+N++SA+CEATGA+VS+VA AVG DSRIG KFL ASVGFGGSCFQKDILNL+YICE   LPEVA YW+QVI +N+YQK RF  +++ S+FNTVS+K+IA+LGFAFKK+TGDTRET AI VC+ LL + A L IYDP+V  +QI  D
Sbjct:  162 GTAINDLLNADRVLIGGEETPEGHQAVEKLSWIYEHWIPKQNILTTNTWSSELSKLAANAFLAQRISSINSLSAVCEATGADVSEVARAVGLDSRIGSKFLQASVGFGGSCFQKDILNLIYICENLNLPEVAAYWQQVIDMNEYQKRRFSQKIIESLFNTVSDKRIAILGFAFKKNTGDTRETAAITVCQTLLEEGAALDIYDPKVEPEQIIDD 375
The following BLAST results are available for this feature:
BLAST of CX295347 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 41
Match NameE-valueIdentityDescription
UGDH_SOYBN3.608e-11493.93UDP-glucose 6-dehydrogenase OS=Glycine max PE=2 SV... [more]
UGDH1_ARATH1.283e-11192.52Probable UDP-glucose 6-dehydrogenase 1 OS=Arabidop... [more]
UGDH2_ARATH5.961e-10988.79Probable UDP-glucose 6-dehydrogenase 2 OS=Arabidop... [more]
UGDH_CHICK2.979e-8470.09UDP-glucose 6-dehydrogenase OS=Gallus gallus GN=UG... [more]
UGDH_MOUSE3.891e-8470.56UDP-glucose 6-dehydrogenase OS=Mus musculus GN=Ugd... [more]
UGDH_PONAB1.478e-8370.09UDP-glucose 6-dehydrogenase OS=Pongo abelii GN=UGD... [more]
UGDH_HUMAN1.478e-8370.09UDP-glucose 6-dehydrogenase OS=Homo sapiens GN=UGD... [more]
UGDH_BOVIN4.302e-8369.63UDP-glucose 6-dehydrogenase OS=Bos taurus GN=UGDH ... [more]
UGDH_RAT7.337e-8369.16UDP-glucose 6-dehydrogenase OS=Rattus norvegicus G... [more]
UGDH_DROME1.252e-8270.09UDP-glucose 6-dehydrogenase OS=Drosophila melanoga... [more]

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Properties
Property NameValue
Genbank descriptionC05071C05SK PhIFruit1 Citrus clementina cDNA clone C05071C05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295347 ID=CX295347; Name=CX295347; organism=Citrus clementina; type=EST; length=654bp
GTTTCTTGCTGAGGGACTGCAATACAGGATCTTTTTAACCCAGATCGGGT
CCTTATCGGTGGTAGAGAAACGCCAGAAGGCCAGAAAGCCGTCAAAGCCT
TGAAGGATGTGTATGCACACTGGGTCCCAGAAGACCGAATTTTGACCACC
AACCTGTGGTCTGCAGAGCTTTCGAAGCTTGCAGCCAATGCTTTCTTGGC
ACAGAGGATCTCATCTGTTAATGCCATGTCAGCTCTCTGCGAGGCAACTG
GAGCTAATGTCAGTCAGGTGGCATTTGCTGTTGGTACAGACTCTAGGATT
GGGCCCAAATTCTTGAATGCTAGTGTTGGGTTCGGTGGCTCCTGCTTCCA
GAAGGATATTTTGAATCTGGTTTACATCTGCGAGTGCAATGGCCTTCCAG
AGGTGGCTGAGTACTGGAAACAAGTCATTAAGATCAATGATTACCAGAAA
AGCCGTTTTGTGAACCGCGTAGTTGCCTCTATGTTCAACACGGTTTCAAA
CAAGAAGATTGCCGTTCTGGGATTTGCCTTCAAGAAGGATACCGGTGACA
CCAGAGAGACCCCAGCCATTGATGTCTGCAAGGGGCTTTTGGGAGACAAA
GCTCGGTTGAGCATATACGACCCACAGGTCACCGAGGACCAGATCCAGAG
GGAC
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