CX295357

Overview
NameCX295357
Unique NameCX295357
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length691
Libraries
Library NameType
PhIFruit1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CX295357 vs. ExPASy Swiss-Prot
Match: LIRP1_ORYSJ (Light-regulated protein OS=Oryza sativa subsp. japonica GN=LIR1 PE=2 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 7.940e-22
Identity = 54/114 (47.37%), Postives = 74/114 (64.91%), Query Frame = -2 
Query:  289 AIYTPKLVGSSL---ASRRSAIKV---AATTSNDPSTFDYNSAFSVFPAEACEVIGGDACSAEMYPEAKLKPEAKNDTSTTASEPIEREYLEYNDTNTVFKGEACDDLGGTFCE 612
            A+    + G SL   A RR A++V   AA  + + +  DY+S  SVFP EAC++IGG+AC+ +MYPEAKL   A    S  A+E ++R+YL Y++  TVF  EACDDLGG FC+
Sbjct:   13 AVLPAAVKGRSLQIQAPRRVALRVRAAAAAVAVEAAEVDYSSNISVFPMEACDLIGGEACNVQMYPEAKLSSSAAVAVSRAAAEEVDRDYLSYDEPTTVFPEEACDDLGGEFCK 126
The following BLAST results are available for this feature:
BLAST of CX295357 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
LIRP1_ORYSJ7.940e-2247.37Light-regulated protein OS=Oryza sativa subsp. jap... [more]
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Properties
Property NameValue
Genbank descriptionC05071D03SK PhIFruit1 Citrus clementina cDNA clone C05071D03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295357 ID=CX295357; Name=CX295357; organism=Citrus clementina; type=EST; length=691bp
GCCTCGTGCCGAATTCGGCACGAGGATAATTTTAACCATAAATTAATTCT
GAATTTATTACTACCCTTTCCACACTTGAACTCTTGACAGACAGATCGTG
TGAACTAGCTTAGCACAAAGGCATTTTTGATTTTTTTCAGCATCAAATAA
AAATATTTTAGAAAAAGGAAATTGTACCATATGCACACCAGTTCACTGGG
GTAAACTATATACAGTAAAAGCATCAAATAGTTGTTTCCCGATATTACGT
TCTTTCTAGTTCTAGTAGACTCCTCTCTGGTACTCGCGTTCACAGAACGT
TCCTCCAAGATCATCACAAGCCTCTCCTTTGAAAACCGTGTTTGTATCGT
TGTACTCTAAATACTCTCTCTCAATGGGCTCTGAGGCAGTTGTTGATGTG
TCGTTCTTGGCCTCTGGTTTCAACTTCGCCTCAGGATACATCTCTGCCGA
GCACGCATCTCCACCGATTACCTCACATGCCTCTGCTGGAAACACCGAGA
AGGCAGAATTGTAATCAAATGTGGAAGGGTCATTGCTTGTTGTAGCAGCT
ACTTTGATTGCGCTGCGTCTGGAAGCAAGTGAGCTGCCTACTAGCTTTGG
AGTATAAATGGCCACTTGGGAAAAGTTCTTGGAGGTTGTTAAAGGGACAA
GCGTTGTTGGTGAAATGCTCAAAGCAGCCTGCATTTTAAAT
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