CX295440

Overview
NameCX295440
Unique NameCX295440
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length658
Libraries
Library NameType
PhIFruit1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig582 contig Ccv1_Contig582:1..655. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX295440 vs. ExPASy Swiss-Prot
Match: MTHR_ORYSJ (Probable methylenetetrahydrofolate reductase OS=Oryza sativa subsp. japonica GN=Os03g0815200 PE=2 SV=1)

HSP 1 Score: 387.497 bits (994), Expect = 3.257e-107
Identity = 182/216 (84.26%), Postives = 199/216 (92.13%), Query Frame = 2
Query:   11 TVHLYTLNMEKSALAILLNLGLIEESKISRSLPWRPPTNVFRVKEDVRPIFWANRPKSYLSRTVGWDQYPRGRWGDSRNPSYGALSDHQFMRPRSRDKKLHEEWAVPLKSVEDIYEKFKNYCLGKLRSSPWSELDGLQPETKIINEQLGKINVKGFLTINSQPAVNGERSDSSSVGWGGPGGYVYQKAYLEFFCSPEKLTALVDKSKALPFITFMA 658
            T+HLYTLNMEKSAL IL+NLGLIEESKISRSLPWRPPTNVFRVKEDVRPIFWANRPKSY+SRT+GWDQYP GRWGDSRNPSYGAL+D+QF RPR R KKL EEWAVP+KSVEDI E+F N+C GKL SSPWSELDGLQPETKII++QL KIN KGFLTINSQPAVNGERSDS+SVGWGGPGGYVYQKAYLEFFCS EKL  L++KSKA P +T++A
Sbjct:  281 TLHLYTLNMEKSALGILMNLGLIEESKISRSLPWRPPTNVFRVKEDVRPIFWANRPKSYISRTLGWDQYPHGRWGDSRNPSYGALTDYQFTRPRGRGKKLQEEWAVPVKSVEDINERFMNFCQGKLTSSPWSELDGLQPETKIIDDQLVKINQKGFLTINSQPAVNGERSDSTSVGWGGPGGYVYQKAYLEFFCSKEKLDQLIEKSKAFPSLTYIA 496          
BLAST of CX295440 vs. ExPASy Swiss-Prot
Match: MTHR1_MAIZE (Methylenetetrahydrofolate reductase 1 OS=Zea mays PE=2 SV=1)

HSP 1 Score: 374.4 bits (960), Expect = 2.853e-103
Identity = 174/216 (80.56%), Postives = 193/216 (89.35%), Query Frame = 2
Query:   11 TVHLYTLNMEKSALAILLNLGLIEESKISRSLPWRPPTNVFRVKEDVRPIFWANRPKSYLSRTVGWDQYPRGRWGDSRNPSYGALSDHQFMRPRSRDKKLHEEWAVPLKSVEDIYEKFKNYCLGKLRSSPWSELDGLQPETKIINEQLGKINVKGFLTINSQPAVNGERSDSSSVGWGGPGGYVYQKAYLEFFCSPEKLTALVDKSKALPFITFMA 658
            T+HLYTLNM+KSA+ IL+NLGLIEESK+SR LPWRP TNVFRVKEDVRPIFWANRPKSYL RT+GWDQYP GRWGDSRNPSYGAL+DHQF RPR R KKL EEWAVPLKSVEDI E+F N+C GKL SSPWSELDGLQPETKII++QL  IN KGFLTINSQPAVNGE+SDS +VGWGGPGGYVYQKAYLEFFC+ EKL  L++K KA P +T++A
Sbjct:  281 TLHLYTLNMDKSAIGILMNLGLIEESKVSRPLPWRPATNVFRVKEDVRPIFWANRPKSYLKRTLGWDQYPHGRWGDSRNPSYGALTDHQFTRPRGRGKKLQEEWAVPLKSVEDISERFTNFCQGKLTSSPWSELDGLQPETKIIDDQLVNINQKGFLTINSQPAVNGEKSDSPTVGWGGPGGYVYQKAYLEFFCAKEKLDQLIEKIKAFPSLTYIA 496          
BLAST of CX295440 vs. ExPASy Swiss-Prot
Match: MTHR2_ARATH (Methylenetetrahydrofolate reductase 2 OS=Arabidopsis thaliana GN=MTHFR2 PE=1 SV=2)

HSP 1 Score: 369.777 bits (948), Expect = 7.028e-102
Identity = 174/216 (80.56%), Postives = 194/216 (89.81%), Query Frame = 2
Query:   11 TVHLYTLNMEKSALAILLNLGLIEESKISRSLPWRPPTNVFRVKEDVRPIFWANRPKSYLSRTVGWDQYPRGRWGDSRNPSYGALSDHQFMRPRSRDKKLHEEWAVPLKSVEDIYEKFKNYCLGKLRSSPWSELDGLQPETKIINEQLGKINVKGFLTINSQPAVNGERSDSSSVGWGGPGGYVYQKAYLEFFCSPEKLTALVDKSKALPFITFMA 658
            ++HLYTLNMEKSALAIL+NLG+I+ESKISRSLPWR P NVFR KEDVRPIFWANRPKSY+SRT GW+ +P+GRWGDSR+ SYGALSDHQF RPR+RDKKL +EW VPLKSVEDI EKFK  CLG L+SSPWSELDGLQPET+IINEQL K+N KGFLTINSQP+VN ERSDS +VGWGGP GYVYQKAYLEFFCS EKL A+V+K KALP IT+MA
Sbjct:  281 SLHLYTLNMEKSALAILMNLGMIDESKISRSLPWRRPANVFRTKEDVRPIFWANRPKSYISRTKGWEDFPQGRWGDSRSASYGALSDHQFSRPRARDKKLQQEWVVPLKSVEDIQEKFKELCLGNLKSSPWSELDGLQPETRIINEQLIKVNSKGFLTINSQPSVNAERSDSPTVGWGGPVGYVYQKAYLEFFCSKEKLDAVVEKCKALPSITYMA 496          
BLAST of CX295440 vs. ExPASy Swiss-Prot
Match: MTHR1_ARATH (Methylenetetrahydrofolate reductase 1 OS=Arabidopsis thaliana GN=MTHFR1 PE=1 SV=1)

HSP 1 Score: 354.369 bits (908), Expect = 3.056e-97
Identity = 161/216 (74.54%), Postives = 187/216 (86.57%), Query Frame = 2
Query:   11 TVHLYTLNMEKSALAILLNLGLIEESKISRSLPWRPPTNVFRVKEDVRPIFWANRPKSYLSRTVGWDQYPRGRWGDSRNPSYGALSDHQFMRPRSRDKKLHEEWAVPLKSVEDIYEKFKNYCLGKLRSSPWSELDGLQPETKIINEQLGKINVKGFLTINSQPAVNGERSDSSSVGWGGPGGYVYQKAYLEFFCSPEKLTALVDKSKALPFITFMA 658
            ++HLYTLN++KSA+ IL+NLGLI+ESKISRSLPWR P NVFR KEDVRPIFWANRPKSY+SRT GW+ +P GRWGDS + +Y  LSD+QF RP+ RDKKL +EW VPLKS+ED+ EKFK  C+G L+SSPWSELDGLQPETKIINEQLGKIN  GFLTINSQP+VN  +SDS ++GWGGPGGYVYQKAYLEFFCS +KL  LV+KSKA P IT+MA
Sbjct:  281 SLHLYTLNVDKSAIGILMNLGLIDESKISRSLPWRRPANVFRTKEDVRPIFWANRPKSYISRTKGWNDFPHGRWGDSHSAAYSTLSDYQFARPKGRDKKLQQEWVVPLKSIEDVQEKFKELCIGNLKSSPWSELDGLQPETKIINEQLGKINSNGFLTINSQPSVNAAKSDSPAIGWGGPGGYVYQKAYLEFFCSKDKLDTLVEKSKAFPSITYMA 496          
BLAST of CX295440 vs. ExPASy Swiss-Prot
Match: MTHR_HUMAN (Methylenetetrahydrofolate reductase OS=Homo sapiens GN=MTHFR PE=1 SV=3)

HSP 1 Score: 179.104 bits (453), Expect = 1.759e-44
Identity = 94/215 (43.72%), Postives = 132/215 (61.40%), Query Frame = 2
Query:   14 VHLYTLNMEKSALAILLNLGLIEESKISRSLPWRPPTNVFRVKEDVRPIFWANRPKSYLSRTVGWDQYPRGRWGDSRNPSYGALSDHQ--FMRPRSRDKKLHEEWAVPLKSVEDIYEKFKNYCLG-------KLRSSPWSELDGLQPETKIINEQLGKINVKGFLTINSQPAVNGERSDSSSVGWGGPGGYVYQKAYLEFFCSPEKLTALVDKSK 631
            +H YTLN E +   +L  LG+  E    R LPW    +  R +EDVRPIFWA+RPKSY+ RT  WD++P GRWG+S +P++G L D+   +++ +S  ++L + W   L S E ++E F  Y  G       K+   PW++ + L  ET ++ E+L ++N +G LTINSQP +NG+ S    VGWG  GGYV+QKAYLEFF S E   AL+   K
Sbjct:  318 LHFYTLNREMATTEVLKRLGMWTEDP-RRPLPWALSAHPKRREEDVRPIFWASRPKSYIYRTQEWDEFPNGRWGNSSSPAFGELKDYYLFYLKSKSPKEELLKMWGEELTSEESVFEVFVLYLSGEPNRNGHKVTCLPWND-EPLAAETSLLKEELLRVNRQGILTINSQPNINGKPSSDPIVGWGPSGGYVFQKAYLEFFTSRETAEALLQVLK 530          
BLAST of CX295440 vs. ExPASy Swiss-Prot
Match: MTHR_BOVIN (Methylenetetrahydrofolate reductase OS=Bos taurus GN=MTHFR PE=2 SV=1)

HSP 1 Score: 179.104 bits (453), Expect = 1.759e-44
Identity = 94/216 (43.52%), Postives = 137/216 (63.43%), Query Frame = 2
Query:   14 VHLYTLNMEKSALAILLNLGL-IEESKISRSLPWRPPTNVFRVKEDVRPIFWANRPKSYLSRTVGWDQYPRGRWGDSRNPSYGALSDHQ--FMRPRSRDKKLHEEWAVPLKSVEDIYEKFKNYCLG-------KLRSSPWSELDGLQPETKIINEQLGKINVKGFLTINSQPAVNGERSDSSSVGWGGPGGYVYQKAYLEFFCSPEKLTALVDKSK 631
            +H YTLN E + + +L  LGL IE+ +  R LPW    +  R  EDVRPIFWA+RPKSY+ RT  WD++P GRWG+S +P++G L D+   +++ +S  ++L + W   L S E +++ F ++  G       K+   PW++ + L  ET ++ E+L ++N +G LTINSQP +NG+ S    VGWG  GGYV+QKAYLEFF S E + AL+   K
Sbjct:  317 LHFYTLNREVATIEVLKRLGLWIEDPR--RPLPWALSAHPKRRVEDVRPIFWASRPKSYIYRTQEWDEFPNGRWGNSSSPAFGELKDYYLFYLKSKSPKEELLKMWGEELTSEESVFQVFAHHLSGEPNQNGYKVTCLPWND-EPLAAETSLMKEELLRVNRRGILTINSQPNINGKPSSDPIVGWGPSGGYVFQKAYLEFFTSRETVEALLQVLK 529          
BLAST of CX295440 vs. ExPASy Swiss-Prot
Match: MTHR_MOUSE (Methylenetetrahydrofolate reductase OS=Mus musculus GN=Mthfr PE=2 SV=1)

HSP 1 Score: 178.333 bits (451), Expect = 3.001e-44
Identity = 92/215 (42.79%), Postives = 134/215 (62.33%), Query Frame = 2
Query:   14 VHLYTLNMEKSALAILLNLGLIEESKISRSLPWRPPTNVFRVKEDVRPIFWANRPKSYLSRTVGWDQYPRGRWGDSRNPSYGALSDHQ--FMRPRSRDKKLHEEWAVPLKSVEDIYEKFKNYCLG-------KLRSSPWSELDGLQPETKIINEQLGKINVKGFLTINSQPAVNGERSDSSSVGWGGPGGYVYQKAYLEFFCSPEKLTALVDKSK 631
            +H YTLN E + + +L  LG+  E    R LPW    +  R +EDVRPIFWA+RPKSY+ RT  WD++P GRWG+S +P++G L D+   +++ +S  ++L + W   L S E ++E F++Y  G       ++   PW++ + L  ET ++ E+L ++N  G LTINSQP +N + S    VGWG  GGYV+QKAYLEFF S E + AL+   K
Sbjct:  317 LHFYTLNREVATMEVLKQLGMWTEDP-RRPLPWALSAHPKRREEDVRPIFWASRPKSYIYRTQDWDEFPNGRWGNSSSPAFGELKDYYLFYLKSKSPREELLKMWGEELTSEESVFEVFEHYLSGEPNRHGYRVTCLPWND-EPLAAETSLMKEELLRVNRLGILTINSQPNINAKPSSDPVVGWGPSGGYVFQKAYLEFFTSRETVEALLQVLK 529          
BLAST of CX295440 vs. ExPASy Swiss-Prot
Match: MTHR_MACFA (Methylenetetrahydrofolate reductase OS=Macaca fascicularis GN=MTHFR PE=2 SV=1)

HSP 1 Score: 177.563 bits (449), Expect = 5.119e-44
Identity = 94/215 (43.72%), Postives = 131/215 (60.93%), Query Frame = 2
Query:   14 VHLYTLNMEKSALAILLNLGLIEESKISRSLPWRPPTNVFRVKEDVRPIFWANRPKSYLSRTVGWDQYPRGRWGDSRNPSYGALSDHQ--FMRPRSRDKKLHEEWAVPLKSVEDIYEKFKNYCLG-------KLRSSPWSELDGLQPETKIINEQLGKINVKGFLTINSQPAVNGERSDSSSVGWGGPGGYVYQKAYLEFFCSPEKLTALVDKSK 631
            +H YTLN E +   +L  LG+  E    R LPW    +  R +EDVRPIFWA+RPKSY+ RT  WD++P GRWG+S +P++G L D+   +++ +S  + L + W   L S E ++E F  Y  G       K+   PW++ + L  ET ++ E+L ++N +G LTINSQP +NG+ S    VGWG  GGYV+QKAYLEFF S E   AL+   K
Sbjct:  318 LHFYTLNREMATTEVLKRLGMWTEDP-RRPLPWALSAHPKRREEDVRPIFWASRPKSYIYRTQEWDEFPNGRWGNSSSPAFGELKDYYLFYLKSKSPRELLLKMWGEELTSEESVFEVFVLYLSGEPNRNGHKVTCLPWND-EPLAAETSLLKEELLRVNRQGILTINSQPNINGKPSSDPVVGWGPSGGYVFQKAYLEFFTSRETAEALLQVLK 530          
BLAST of CX295440 vs. ExPASy Swiss-Prot
Match: MTHR1_SCHPO (Methylenetetrahydrofolate reductase 1 OS=Schizosaccharomyces pombe GN=met9 PE=1 SV=1)

HSP 1 Score: 166.777 bits (421), Expect = 9.036e-41
Identity = 92/222 (41.44%), Postives = 127/222 (57.21%), Query Frame = 2
Query:   14 VHLYTLNMEKSALAILLNLGLIEESKISRSLPWRPPTNVF---------RVKEDVRPIFWANRPKSYLSRTVGWDQYPRGRWGDSRNPSYGALSDHQFMRPRSRDKKLHEEWAVPLKSVEDIYEKFKNYCLGKLRSSPWSELDGLQPETKIINEQLGKINVKGFLTINSQPAVNGERSDSSSVGWGGPGGYVYQKAYLEFFCSPEKLTALVDKSKALPFITF 652
            +H YT+N+EK+   I+  LGL++E+      P     NV          R+ E VRPIFW  R +SY+SRT  WD+ P GRWGDSR+P++G     ++   R   K++   W  P KS  +I + F  YC  K+ S PWS+L  +  E  +I +QL  +N   FLTINSQPA+NGE+S     GWG P GYV+QK Y+EFF  P  L  L +  K L  +++
Sbjct:  273 LHFYTMNLEKAVKMIIERLGLLDENLA----PIVDTNNVELTNASSQDRRINEGVRPIFWRTRNESYVSRTDQWDELPHGRWGDSRSPAFGEFDAIRYGL-RMSPKEITTSWGSP-KSYSEIGDLFARYCEKKISSLPWSDLP-ISDEADLIRDQLLSMNRNAFLTINSQPALNGEKSSHPVFGWGPPNGYVFQKPYVEFFVHPSLLNELKETVKKLNSVSY 487          
BLAST of CX295440 vs. ExPASy Swiss-Prot
Match: MTHR_CAEEL (Probable methylenetetrahydrofolate reductase OS=Caenorhabditis elegans GN=C06A8.1 PE=1 SV=2)

HSP 1 Score: 162.925 bits (411), Expect = 1.305e-39
Identity = 93/220 (42.27%), Postives = 132/220 (60.00%), Query Frame = 2
Query:   11 TVHLYTLNMEKSALAILLNLGLIEESKISRSLPWRPPT-NVFRVKEDVRPIFWANRPKSYLSRTVGWDQYPRGRWGDSRNPSYGALSDHQFMR---PRSRDKKLHEEWAVPLKSVEDIYEKFKNYCLG-------KLRSSPWSELD-GLQPETKIINEQLGKINVKGFLTINSQPAVNGERSDSSSVGWGGPGGYVYQKAYLEFFCSPE---KLTALVDK 625
            ++HLYT+N E S   IL +LGL +     R  PW+  + +  R  E VRPI+W+ RP+SY++RT  WDQ+P GRWG+S +P++G +S +        R+ D +L   +   ++S ED+   F NY          K+   PW+E + G+QPET +I+EQL   N  G LT+NSQP+VNG  S    VGWG PGGY YQKAYLE F + E   KL  ++++
Sbjct:  330 SIHLYTMNREGSIREILKSLGLWKLEG-DRVFPWKNRSQHPIRCLESVRPIYWSFRPRSYITRTRDWDQFPNGRWGNSSSPAFGDVSSYYLSNLTTVRNADDRL-AMFGANIESFEDVKRVFINYITQAPNADGVKVTVLPWTEAETGVQPETSLISEQLVWCNENGILTVNSQPSVNGAPSTDPLVGWGKPGGYCYQKAYLECFMTAELSDKLIQIIER 547          
The following BLAST results are available for this feature:
BLAST of CX295440 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 13
Match NameE-valueIdentityDescription
MTHR_ORYSJ3.257e-10784.26Probable methylenetetrahydrofolate reductase OS=Or... [more]
MTHR1_MAIZE2.853e-10380.56Methylenetetrahydrofolate reductase 1 OS=Zea mays ... [more]
MTHR2_ARATH7.028e-10280.56Methylenetetrahydrofolate reductase 2 OS=Arabidops... [more]
MTHR1_ARATH3.056e-9774.54Methylenetetrahydrofolate reductase 1 OS=Arabidops... [more]
MTHR_HUMAN1.759e-4443.72Methylenetetrahydrofolate reductase OS=Homo sapien... [more]
MTHR_BOVIN1.759e-4443.52Methylenetetrahydrofolate reductase OS=Bos taurus ... [more]
MTHR_MOUSE3.001e-4442.79Methylenetetrahydrofolate reductase OS=Mus musculu... [more]
MTHR_MACFA5.119e-4443.72Methylenetetrahydrofolate reductase OS=Macaca fasc... [more]
MTHR1_SCHPO9.036e-4141.44Methylenetetrahydrofolate reductase 1 OS=Schizosac... [more]
MTHR_CAEEL1.305e-3942.27Probable methylenetetrahydrofolate reductase OS=Ca... [more]

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Properties
Property NameValue
Genbank descriptionC05072C03SK PhIFruit1 Citrus clementina cDNA clone C05072C03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295440 ID=CX295440; Name=CX295440; organism=Citrus clementina; type=EST; length=658bp
GAGGGATTAGACTGTGCATCTTTATACTCTAAACATGGAGAAATCTGCAT
TAGCTATATTATTGAATCTTGGTTTGATTGAAGAGTCCAAAATTTCCAGA
TCCTTACCCTGGAGACCCCCTACTAATGTTTTCCGCGTTAAGGAAGATGT
TCGTCCAATATTTTGGGCTAATCGTCCAAAGAGCTACTTATCAAGGACAG
TTGGTTGGGACCAGTATCCACGTGGACGATGGGGTGATTCTCGTAACCCA
TCATATGGTGCTTTATCTGACCATCAGTTTATGCGGCCTCGTTCACGTGA
CAAGAAACTTCATGAAGAATGGGCTGTCCCCTTGAAAAGTGTTGAAGATA
TCTATGAAAAATTTAAGAATTACTGCCTTGGGAAATTGAGAAGCAGTCCT
TGGTCAGAGTTAGACGGGCTTCAGCCAGAGACCAAAATCATAAATGAACA
GCTTGGAAAGATCAATGTGAAAGGTTTCCTCACTATCAACAGCCAGCCGG
CAGTCAATGGTGAAAGATCCGATTCATCTTCTGTTGGTTGGGGTGGGCCA
GGAGGATATGTTTATCAGAAAGCATATCTAGAGTTTTTCTGCTCACCAGA
GAAGTTGACTGCACTTGTTGACAAAAGCAAAGCTCTTCCATTCATAACCT
TCATGGCT
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