CX295546

Overview
NameCX295546
Unique NameCX295546
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length694
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX295546 vs. ExPASy Swiss-Prot
Match: XTH30_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 30 OS=Arabidopsis thaliana GN=XTH30 PE=2 SV=2)

HSP 1 Score: 241.891 bits (616), Expect = 2.440e-63
Identity = 109/175 (62.29%), Postives = 136/175 (77.71%), Query Frame = 3
Query:    3 EERYQLWFHPTKQFHRYSILWTSNNIIFYVDEVPIREVVRSTAMGGDFPSKPMSLYTTIWDASNWATSGGKAKVNYKYAPFTSEFKDFVLEGCPVDPIEQVPSSNCQDTDSRLAEKGLSVITPAGXXXXXXXXXXYIYYSYCYDTIRYPVPLPECVLVPSERQRFKDTGRLKFGG 527
            EERY+LWF P+K+FHRYSILWT + IIF+VD+VPIREV+R+ AMG D+P+KPM+LY TIWDAS+WATSGGK K NYK+APF +EFK F L+GC VDPI++VP  +C D+   L  +  S I              ++YYSYCYDT+RYP PLPECV+VP+E+ RFK+TGRLKFGG
Sbjct:  140 EERYRLWFDPSKEFHRYSILWTPHKIIFWVDDVPIREVIRNDAMGADYPAKPMALYATIWDASDWATSGGKYKANYKFAPFVAEFKSFSLDGCSVDPIQEVP-MDCSDSVDFLESQDYSSINSHQRAAMRRFRQRFMYYSYCYDTLRYPEPLPECVIVPAEKDRFKETGRLKFGG 313          
BLAST of CX295546 vs. ExPASy Swiss-Prot
Match: XTH29_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 29 OS=Arabidopsis thaliana GN=XTH29 PE=2 SV=1)

HSP 1 Score: 219.55 bits (558), Expect = 1.297e-56
Identity = 104/185 (56.22%), Postives = 126/185 (68.11%), Query Frame = 3
Query:    3 EERYQLWFHPTKQFHRYSILWTSNNIIFYVDEVPIREVVRSTAMGGDFPSKPMSLYTTIWDASNWATSGGKAKVNYKYAPFTSEFKDFVLEGCPV----------DPIEQVPSSNCQDTDSRLAEKGLSVITPAGXXXXXXXXXXYIYYSYCYDTIRYPVPLPECVLVPSERQRFKDTGRLKFGG 527
            EERY+LWF P+K+FHRYSILWT   IIF+VD+VPIRE++R   M GD+P KPMSLY TIWDAS+WATSGGK  V+Y ++PF SEFKD  L+GC V          + I    + NC  +D  L     S I+P            Y+YYSYCYDTIRY VP PECV+V +E+ RF+DTGRLKFGG
Sbjct:  148 EERYRLWFDPSKEFHRYSILWTPTKIIFWVDDVPIREILRKEEMNGDYPQKPMSLYATIWDASSWATSGGKFGVDYTFSPFVSEFKDIALDGCNVSDSFPGENNNNNIGNYNNINCSVSDQFLMSNDYSTISPKQATAMRRFRERYMYYSYCYDTIRYSVPPPECVIVTAEKNRFRDTGRLKFGG 332          
BLAST of CX295546 vs. ExPASy Swiss-Prot
Match: XTH27_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 27 OS=Arabidopsis thaliana GN=XTH27 PE=2 SV=2)

HSP 1 Score: 201.83 bits (512), Expect = 2.798e-51
Identity = 100/178 (56.18%), Postives = 120/178 (67.42%), Query Frame = 3
Query:    3 EERYQLWFHPTKQFHRYSILWTSNNIIFYVDEVPIREVVRSTAMGGDFPSKPMSLYTTIWDASNWATSGGKAKVNYKYAPFTSEFKDFVLEGCPVDPIEQVPSSNCQD---TDSRLAEKGLSVITPAGXXXXXXXXXXYIYYSYCYDTIRYPVPLPECVLVPSERQRFKDTGRLKFGG 527
            EERY LWF PT+ FH+YSILW+ ++IIF+VD VPIREV R+  MGG FPSKPMSLYTTIWD S WAT+GGK  VNYKYAP+ + F D VL GCPVDPIEQ P   C +    D R A++    ITP+            + YSYCYD  RY V L ECV+ P+E QR +    ++FGG
Sbjct:  139 EERYNLWFDPTEDFHQYSILWSDSHIIFFVDNVPIREVKRTAEMGGHFPSKPMSLYTTIWDGSKWATNGGKYGVNYKYAPYIARFSDLVLHGCPVDPIEQFP--RCDEGAAEDMRAAQE----ITPSQRSKMDVFRRRLMTYSYCYDRARYNVALSECVVNPAEAQRLRVYDPVRFGG 310          
BLAST of CX295546 vs. ExPASy Swiss-Prot
Match: XTH28_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 28 OS=Arabidopsis thaliana GN=XTH28 PE=2 SV=1)

HSP 1 Score: 196.438 bits (498), Expect = 1.175e-49
Identity = 98/178 (55.06%), Postives = 122/178 (68.54%), Query Frame = 3
Query:    3 EERYQLWFHPTKQFHRYSILWTSNNIIFYVDEVPIREVVRSTAMGGDFPSKPMSLYTTIWDASNWATSGGKAKVNYKYAPFTSEFKDFVLEGCPVDPIEQVPSSNCQD---TDSRLAEKGLSVITPAGXXXXXXXXXXYIYYSYCYDTIRYPVPLPECVLVPSERQRFKDTGRLKFGG 527
            EERY LWF PT+ FH+YSILW+ ++IIFYVD VPIREV R+ +MGGDFP+KPMSLY+TIWD S WAT GGK  VNYKYAP+ S+F D +L GC VDP E+ PS  C+D    + RLA    S IT +           ++ YSYCYD +RY V L ECV+ P+E +R +    + FGG
Sbjct:  139 EERYNLWFDPTEDFHQYSILWSLSHIIFYVDNVPIREVKRTASMGGDFPAKPMSLYSTIWDGSKWATDGGKYGVNYKYAPYVSQFTDLILHGCAVDPTEKFPS--CKDEAVQNLRLA----SEITESQRNKMEIFRQKHMTYSYCYDHMRYKVVLSECVVNPAEAKRLRVYDPVTFGG 310          
BLAST of CX295546 vs. ExPASy Swiss-Prot
Match: XTH33_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 33 OS=Arabidopsis thaliana GN=XTH33 PE=2 SV=2)

HSP 1 Score: 127.487 bits (319), Expect = 6.706e-29
Identity = 60/161 (37.27%), Postives = 84/161 (52.17%), Query Frame = 3
Query:    3 EERYQLWFHPTKQFHRYSILWTSNNIIFYVDEVPIREVVRSTAMGGDFPSKPMSLYTTIWDASNWATSGGKAKVNYKYAPFTSEFKDFVLEGCPVDPIEQVPSSNCQDTDSRLAE------KGLSVITPAGXXXXXXXXXXYIYYSYCYDTIRYPVPLPEC 467
            EE++  WF PT+ FH Y+++W S++ +F VD +P+R+     A    +PSKPMSLY T+WD S WAT GGK  VNYKYAPF     D  L GC V+      S  C  +   ++       +  + ++              ++YSYC D  RY V   EC
Sbjct:  149 EEKFYFWFDPTQAFHDYTLIWNSHHTVFLVDNIPVRQFPNRGAFTSAYPSKPMSLYVTVWDGSEWATKGGKYPVNYKYAPFVVSVADVELSGCSVNNGSSTGSGPCTKSGGSISSLDPVDGQDFATLSKNQINAMDWARRKLMFYSYCSDKPRYKVMPAEC 309          
BLAST of CX295546 vs. ExPASy Swiss-Prot
Match: XTH6_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 6 OS=Arabidopsis thaliana GN=XTH6 PE=2 SV=2)

HSP 1 Score: 126.331 bits (316), Expect = 1.494e-28
Identity = 63/156 (40.38%), Postives = 92/156 (58.97%), Query Frame = 3
Query:    3 EERYQLWFHPTKQFHRYSILWTSNNIIFYVDEVPIREVVRSTAMGGDFP-SKPMSLYTTIWDASNWATSGGKAKVNYKYAPFTSEFKDFVLEGCPVDPIEQVPSSNCQDTDSRLAEKGLSVITPAGXXXXXXXXXXYIYYSYCYDTIRYPVPLPEC 467
            E+R  LWF P+  +H Y+ILW+  +I+FYVD+VPIRE   + A    +P S+PM +Y+T+W+A +WAT GG  K+++  APF + +KDF +EGCPV P      SN  +     A + L+ +              ++ Y YC D  R+PVP PEC
Sbjct:  139 EQRVNLWFDPSMDYHTYTILWSHKHIVFYVDDVPIREYKNNEAKNIAYPTSQPMGVYSTLWEADDWATRGGLEKIDWSKAPFYAYYKDFDIEGCPV-PGPTFCPSNPHNWWEGYAYQSLNAVE---ARRYRWVRVNHMVYDYCTDRSRFPVPPPEC 290          
BLAST of CX295546 vs. ExPASy Swiss-Prot
Match: XTH2_ARATH (Xyloglucan endotransglucosylase/hydrolase protein 2 OS=Arabidopsis thaliana GN=XTH2 PE=2 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 4.346e-28
Identity = 61/155 (39.35%), Postives = 85/155 (54.84%), Query Frame = 3
Query:    3 EERYQLWFHPTKQFHRYSILWTSNNIIFYVDEVPIREVVRSTAMGGDFPSKPMSLYTTIWDASNWATSGGKAKVNYKYAPFTSEFKDFVLEGCPVDPIEQVPSSNCQDTDSRLAEKGLSVITPAGXXXXXXXXXXYIYYSYCYDTIRYPVPLPEC 467
            E+++  WF PT  FH Y ILW    I+FYVD+VPIR        G ++PSKPM L  ++W+  NWATSGGK K+N+ YAPF ++++ F   GC V+  +   ++ C  T      +  S ++             Y+ Y YC D  RYPVP  EC
Sbjct:  135 EQKFVPWFDPTTSFHTYGILWNPYQIVFYVDKVPIRVFKNIKKSGVNYPSKPMQLVASLWNGENWATSGGKEKINWAYAPFKAQYQGFSDHGCHVNG-QSNNANVCGSTRYWWNTRTYSQLSANEQKVMENVRAKYMTYDYCSDRPRYPVPPSEC 288          
BLAST of CX295546 vs. ExPASy Swiss-Prot
Match: XTH1_SOLLC (Probable xyloglucan endotransglucosylase/hydrolase 1 OS=Solanum lycopersicum GN=XTH1 PE=2 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 9.683e-28
Identity = 60/156 (38.46%), Postives = 86/156 (55.13%), Query Frame = 3
Query:    3 EERYQLWFHPTKQFHRYSILWTSNNIIFYVDEVPIREVVRSTAMGGDFP-SKPMSLYTTIWDASNWATSGGKAKVNYKYAPFTSEFKDFVLEGCPVDPIEQVPSSNCQDTDSRLAEKGLSVITPAGXXXXXXXXXXYIYYSYCYDTIRYPVPLPEC 467
            E+R  LWF PTK +H YS+LW +  I+ +VD+VPIR    S  +G  FP ++PM +Y+++WDA +WAT GG  K N+  APFT+ +  F ++GC     ++V   N +       +K    +              Y  Y+YC D  RYPVP PEC
Sbjct:  136 EQRIYLWFDPTKGYHSYSVLWNTYLIVIFVDDVPIRAFKNSKDLGVKFPFNQPMKIYSSLWDADDWATRGGLEKTNWANAPFTASYTSFHVDGCEAATPQEVQVCNTKGM-KWWDQKAFQDLDALQYRRLRWVRQKYTVYNYCTDKARYPVPPPEC 290          
BLAST of CX295546 vs. ExPASy Swiss-Prot
Match: XTH7_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 7 OS=Arabidopsis thaliana GN=XTH7 PE=2 SV=2)

HSP 1 Score: 123.25 bits (308), Expect = 1.265e-27
Identity = 59/156 (37.82%), Postives = 87/156 (55.77%), Query Frame = 3
Query:    3 EERYQLWFHPTKQFHRYSILWTSNNIIFYVDEVPIREVVRSTAMGGDFPS-KPMSLYTTIWDASNWATSGGKAKVNYKYAPFTSEFKDFVLEGCPVDPIEQVPSSNCQDTDSRLAEKGLSVITPAGXXXXXXXXXXYIYYSYCYDTIRYPVPLPEC 467
            E+R  LWF P++ FH Y+I W    I+FYVD VPIR    + A    +P  +PM +Y+T+W+A +WAT GG  K+N+  APF + +KDF +EGCPV      P+++    +     +    ++P            ++ Y YC D  R+PVP PEC
Sbjct:  138 EQRVNLWFDPSRDFHEYAISWNHLRIVFYVDNVPIRVYKNNEARKVPYPRFQPMGVYSTLWEADDWATRGGIEKINWSRAPFYAYYKDFDIEGCPVPGPADCPANSKNWWEGSAYHQ----LSPVEARSYRWVRVNHMVYDYCTDKSRFPVPPPEC 289          
BLAST of CX295546 vs. ExPASy Swiss-Prot
Match: XTH31_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 31 OS=Arabidopsis thaliana GN=XTH31 PE=2 SV=2)

HSP 1 Score: 123.25 bits (308), Expect = 1.265e-27
Identity = 62/156 (39.74%), Postives = 91/156 (58.33%), Query Frame = 3
Query:    3 EERYQLWFHPTKQFHRYSILWTSNNIIFYVDEVPIREVVRSTAMGGDFPSKPMSLYTTIWDASNWATSGGKAKVNYKYAPFTSEFKDFVLEGCPVDPIEQVPSSNCQ-DTDSRLAEKGLSVITPAGXXXXXXXXXXYIYYSYCYDTIRYPVPLPEC 467
            E ++ LWF PT+ FH Y+ILW  N I+F+VD+VPIR   R       FP++PM +Y +IWDAS+WAT  G+ K +Y+Y PF +++K+F L GC  D      SS+C+  + + +  +GLS    A           ++ Y+YC+D  R     PEC
Sbjct:  148 EMKFTLWFDPTQDFHHYAILWNPNQIVFFVDDVPIRTYNRKNE--AIFPTRPMWVYGSIWDASDWATENGRIKADYRYQPFVAKYKNFKLAGCTAD-----SSSSCRPPSPAPMRNRGLSRQQMAA---LTWAQRNFLVYNYCHDPKRDHTQTPEC 293          
The following BLAST results are available for this feature:
BLAST of CX295546 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 42
Match NameE-valueIdentityDescription
XTH30_ARATH2.440e-6362.29Probable xyloglucan endotransglucosylase/hydrolase... [more]
XTH29_ARATH1.297e-5656.22Probable xyloglucan endotransglucosylase/hydrolase... [more]
XTH27_ARATH2.798e-5156.18Probable xyloglucan endotransglucosylase/hydrolase... [more]
XTH28_ARATH1.175e-4955.06Probable xyloglucan endotransglucosylase/hydrolase... [more]
XTH33_ARATH6.706e-2937.27Probable xyloglucan endotransglucosylase/hydrolase... [more]
XTH6_ARATH1.494e-2840.38Probable xyloglucan endotransglucosylase/hydrolase... [more]
XTH2_ARATH4.346e-2839.35Xyloglucan endotransglucosylase/hydrolase protein ... [more]
XTH1_SOLLC9.683e-2838.46Probable xyloglucan endotransglucosylase/hydrolase... [more]
XTH7_ARATH1.265e-2737.82Probable xyloglucan endotransglucosylase/hydrolase... [more]
XTH31_ARATH1.265e-2739.74Probable xyloglucan endotransglucosylase/hydrolase... [more]

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Properties
Property NameValue
Genbank descriptionC05073D03SK DroRLeaf1 Citrus clementina cDNA clone C05073D03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295546 ID=CX295546; Name=CX295546; organism=Citrus clementina; type=EST; length=694bp
GGGAAGAGAGATACCAGCTTTGGTTTCATCCCACGAAGCAATTTCATAGA
TATAGCATTCTTTGGACAAGCAACAACATTATATTCTATGTGGATGAAGT
ACCAATAAGGGAAGTCGTGCGCTCAACGGCAATGGGTGGAGATTTCCCAT
CAAAGCCAATGTCATTGTACACAACAATTTGGGATGCCTCAAATTGGGCC
ACATCAGGTGGCAAAGCCAAAGTTAATTACAAGTACGCACCATTCACTTC
TGAATTTAAAGACTTTGTGTTAGAGGGCTGCCCGGTTGATCCCATTGAGC
AAGTCCCCTCCTCCAACTGCCAAGACACCGATTCCCGGCTTGCCGAGAAA
GGCCTCTCCGTCATCACTCCGGCCGGGAGACGGGCCATGCGTAGATTCCG
GGAACGTTACATATACTATTCATATTGTTATGACACAATACGATACCCCG
TGCCATTACCCGAATGTGTTCTTGTTCCATCAGAACGACAACGTTTTAAA
GACACCGGTAGGTTGAAATTCGGCGGCAGCCATAAGAGTCATAGACATAG
GTCGAGGCGGCAGCCGGGAGCTTCAAATTCCGAGGATCCGGACATGTAAA
TTAATTTATTGTGGTGGTGTTTTTATGTTCATGATTATTTTTTTGTTTTT
TTTGTTTTTTTGTTTTAACGTATAGCTTTGTTTTGTGATTAGAA
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