CX295629

Overview
NameCX295629
Unique NameCX295629
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length752
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX295629 vs. ExPASy Swiss-Prot
Match: NC2B_ARATH (Protein Dr1 homolog OS=Arabidopsis thaliana GN=DR1 PE=2 SV=1)

HSP 1 Score: 201.83 bits (512), Expect = 3.239e-51
Identity = 106/149 (71.14%), Postives = 116/149 (77.85%), Query Frame = 3
Query:  225 MEPMDIVGKSKEDASLPKATMTKIIKEMLPADVRVARDAQDLLIECCVEFINLVSSESNEVCSREDKRTIAPEHVLKALEVLGFGEYIEEVYAAYEQHKLETM-DSLKGGKWSNGXXXXXXXXXXXXXXXXXXXXXXXNGGAAGP-PKH 665
            M+PMDIVGKSKEDASLPKATMTKIIKEMLP DVRVARDAQDLLIECCVEFINLVSSESN+VC++EDKRTIAPEHVLKAL+VLGFGEYIEEVYAAYEQHK ETM D+ +  KW+ G                       NGG + P P+H
Sbjct:    1 MDPMDIVGKSKEDASLPKATMTKIIKEMLPPDVRVARDAQDLLIECCVEFINLVSSESNDVCNKEDKRTIAPEHVLKALQVLGFGEYIEEVYAAYEQHKYETMQDTQRSVKWNPGAQMTEEEAAAEQQRMFAEARARMNGGVSVPQPEH 149          
BLAST of CX295629 vs. ExPASy Swiss-Prot
Match: NC2B_DICDI (Protein Dr1 homolog OS=Dictyostelium discoideum GN=dr1 PE=3 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 1.121e-27
Identity = 55/100 (55.00%), Postives = 78/100 (78.00%), Query Frame = 3
Query:  255 KEDASLPKATMTKIIKEMLPADVRVARDAQDLLIECCVEFINLVSSESNEVCSREDKRTIAPEHVLKALEVLGFGEYIEEVYAAYEQHKLETMDSLKGGK 554
            +++ SLPKAT++K+IKEMLP DV+ + + +DL++ECCVEFI+L+SSE+N++C RE KRTIA EHV+KAL  LGF +Y ++V   Y++HKLE     K  K
Sbjct:    8 EDNLSLPKATVSKLIKEMLPQDVKCSNETRDLILECCVEFIHLISSEANDICGREQKRTIAAEHVIKALTELGFSDYTQKVSDVYDKHKLEVSTKSKSSK 107          
BLAST of CX295629 vs. ExPASy Swiss-Prot
Match: NC2B_SCHPO (Negative cofactor 2 complex subunit beta OS=Schizosaccharomyces pombe GN=ncb2 PE=2 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 2.857e-23
Identity = 50/92 (54.35%), Postives = 70/92 (76.09%), Query Frame = 3
Query:  246 GKSKEDASLPKATMTKIIKEMLPADVRVARDAQDLLIECCVEFINLVSSESNEVCSREDKRTIAPEHVLKALEVLGFGEYIEEVYAAYEQHK 521
            G + ++ SLPKAT+ K++ ++LP D+   ++A+DLLIECCVEFI+LVSSE+NE+C +E K+TIA EH++KALE L F EYI E      +HK
Sbjct:    4 GFADDELSLPKATVQKMVSDILPVDLTFTKEARDLLIECCVEFIHLVSSEANEICEKEAKKTIAAEHIIKALENLEFKEYIAEALEVAAEHK 95          
BLAST of CX295629 vs. ExPASy Swiss-Prot
Match: NC2B_RAT (Protein Dr1 OS=Rattus norvegicus GN=Dr1 PE=2 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 2.418e-22
Identity = 47/88 (53.41%), Postives = 71/88 (80.68%), Query Frame = 3
Query:  258 EDASLPKATMTKIIKEMLPADVRVARDAQDLLIECCVEFINLVSSESNEVCSREDKRTIAPEHVLKALEVLGFGEYIEEVYAAYEQHK 521
            +D ++P+A + K+IKE LP +VRVA DA++L++ CC EFI+L+SSE+NE+C++ +K+TI+PEHV++ALE LGFG YI EV    ++ K
Sbjct:    9 DDLTIPRAAINKMIKETLP-NVRVANDARELVVNCCTEFIHLISSEANEICNKSEKKTISPEHVIQALESLGFGSYISEVKEVLQECK 95          
BLAST of CX295629 vs. ExPASy Swiss-Prot
Match: NC2B_MOUSE (Protein Dr1 OS=Mus musculus GN=Dr1 PE=2 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 2.418e-22
Identity = 47/88 (53.41%), Postives = 71/88 (80.68%), Query Frame = 3
Query:  258 EDASLPKATMTKIIKEMLPADVRVARDAQDLLIECCVEFINLVSSESNEVCSREDKRTIAPEHVLKALEVLGFGEYIEEVYAAYEQHK 521
            +D ++P+A + K+IKE LP +VRVA DA++L++ CC EFI+L+SSE+NE+C++ +K+TI+PEHV++ALE LGFG YI EV    ++ K
Sbjct:    9 DDLTIPRAAINKMIKETLP-NVRVANDARELVVNCCTEFIHLISSEANEICNKSEKKTISPEHVIQALESLGFGSYISEVKEVLQECK 95          
BLAST of CX295629 vs. ExPASy Swiss-Prot
Match: NC2B_HUMAN (Protein Dr1 OS=Homo sapiens GN=DR1 PE=1 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 2.418e-22
Identity = 47/88 (53.41%), Postives = 71/88 (80.68%), Query Frame = 3
Query:  258 EDASLPKATMTKIIKEMLPADVRVARDAQDLLIECCVEFINLVSSESNEVCSREDKRTIAPEHVLKALEVLGFGEYIEEVYAAYEQHK 521
            +D ++P+A + K+IKE LP +VRVA DA++L++ CC EFI+L+SSE+NE+C++ +K+TI+PEHV++ALE LGFG YI EV    ++ K
Sbjct:    9 DDLTIPRAAINKMIKETLP-NVRVANDARELVVNCCTEFIHLISSEANEICNKSEKKTISPEHVIQALESLGFGSYISEVKEVLQECK 95          
BLAST of CX295629 vs. ExPASy Swiss-Prot
Match: NC2B_CHICK (Protein Dr1 OS=Gallus gallus GN=DR1 PE=2 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 2.418e-22
Identity = 47/88 (53.41%), Postives = 71/88 (80.68%), Query Frame = 3
Query:  258 EDASLPKATMTKIIKEMLPADVRVARDAQDLLIECCVEFINLVSSESNEVCSREDKRTIAPEHVLKALEVLGFGEYIEEVYAAYEQHK 521
            +D ++P+A + K+IKE LP +VRVA DA++L++ CC EFI+L+SSE+NE+C++ +K+TI+PEHV++ALE LGFG YI EV    ++ K
Sbjct:    9 DDLTIPRAAINKMIKETLP-NVRVANDARELVVNCCTEFIHLISSEANEICNKSEKKTISPEHVIQALESLGFGSYISEVKEVLQECK 95          
BLAST of CX295629 vs. ExPASy Swiss-Prot
Match: NC2B_DROME (Protein Dr1 OS=Drosophila melanogaster GN=NC2beta PE=1 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 2.767e-18
Identity = 44/88 (50.00%), Postives = 67/88 (76.14%), Query Frame = 3
Query:  258 EDASLPKATMTKIIKEMLPADVRVARDAQDLLIECCVEFINLVSSESNEVCSREDKRTIAPEHVLKALEVLGFGEYIEEVYAAYEQHK 521
            ++ +LP+A++ KIIKE++P  VRVA ++++L++ CC EFI+L+SSE+NEVC+  +K+TI  EHVL+ALE LGF +Y +E  A     K
Sbjct:   16 DELTLPRASINKIIKELVPT-VRVANESRELILNCCSEFIHLISSEANEVCNMRNKKTINAEHVLEALERLGFHDYKQEAEAVLHDCK 102          
BLAST of CX295629 vs. ExPASy Swiss-Prot
Match: NCB2_YEAST (Negative cofactor 2 complex subunit beta OS=Saccharomyces cerevisiae GN=NCB2 PE=1 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.424e-14
Identity = 43/99 (43.43%), Postives = 67/99 (67.68%), Query Frame = 3
Query:  258 EDASLPKATMTKIIKEMLPADVRVARDAQDLLIECCVEFINLVSSESNEVCSREDKRTIAPEHVLKALEVLGFGEYI---EEVYAAYE--QHKLETMDS 539
            ++ SLPKAT+ K+I E+L  D+   +DA++++I   +EFI ++SS ++E+   E K+TIAPEHV+KALE L + E+I   EE+   ++  Q   ET DS
Sbjct:    6 DNVSLPKATVQKMISEILDQDLMFTKDAREIIINSGIEFIMILSSMASEMADNEAKKTIAPEHVIKALEELEYNEFIPFLEEILLNFKGSQKVKETRDS 104          
BLAST of CX295629 vs. ExPASy Swiss-Prot
Match: NFYB8_ARATH (Nuclear transcription factor Y subunit B-8 OS=Arabidopsis thaliana GN=NFYB8 PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.571e-13
Identity = 40/102 (39.22%), Postives = 70/102 (68.63%), Query Frame = 3
Query:  255 KEDASLPKATMTKIIKEMLPADVRVARDAQDLLIECCVEFINLVSSESNEVCSREDKRTIAPEHVLKALEVLGFGEYIE--EVY-AAYEQHKLETMDSLKGG 551
            ++D  LP A +++I+K  LPA+ ++A+DA++++ EC  EFI+ V+SE+++ C RE ++TI  + +L A+  LGF +Y+E  +VY   Y + + +T  S KGG
Sbjct:   30 EQDRFLPIANISRIMKRGLPANGKIAKDAKEIVQECVSEFISFVTSEASDKCQREKRKTINGDDLLWAMATLGFEDYMEPLKVYLMRYREMEGDTKGSAKGG 131          
The following BLAST results are available for this feature:
BLAST of CX295629 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 28
Match NameE-valueIdentityDescription
NC2B_ARATH3.239e-5171.14Protein Dr1 homolog OS=Arabidopsis thaliana GN=DR1... [more]
NC2B_DICDI1.121e-2755.00Protein Dr1 homolog OS=Dictyostelium discoideum GN... [more]
NC2B_SCHPO2.857e-2354.35Negative cofactor 2 complex subunit beta OS=Schizo... [more]
NC2B_RAT2.418e-2253.41Protein Dr1 OS=Rattus norvegicus GN=Dr1 PE=2 SV=1[more]
NC2B_MOUSE2.418e-2253.41Protein Dr1 OS=Mus musculus GN=Dr1 PE=2 SV=1[more]
NC2B_HUMAN2.418e-2253.41Protein Dr1 OS=Homo sapiens GN=DR1 PE=1 SV=1[more]
NC2B_CHICK2.418e-2253.41Protein Dr1 OS=Gallus gallus GN=DR1 PE=2 SV=1[more]
NC2B_DROME2.767e-1850.00Protein Dr1 OS=Drosophila melanogaster GN=NC2beta ... [more]
NCB2_YEAST2.424e-1443.43Negative cofactor 2 complex subunit beta OS=Saccha... [more]
NFYB8_ARATH1.571e-1339.22Nuclear transcription factor Y subunit B-8 OS=Arab... [more]

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Properties
Property NameValue
Genbank descriptionC05074C02SK DroRLeaf1 Citrus clementina cDNA clone C05074C02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295629 ID=CX295629; Name=CX295629; organism=Citrus clementina; type=EST; length=752bp
TTCGGCCGAGGCCCTACTCGCATGCGAGTGAGAGCTCTCTCTCTTATCGT
GAAGAACAACCATCAAAAGCCATGACTTTGTTTGATAAATCCAGTATATA
TCAACGATGTCCCTTCCACTGAATCGTCCCTCGACTCGGATCTTAACTCG
ACTGACTCGTTTTCTGCATCCTTAGTTGATTCTCTCGTTTCTCTGTTCGA
CTCGGTTCGGTGACTCGATTAAAGATGGAGCCGATGGATATTGTTGGAAA
GTCAAAGGAGGACGCATCGCTCCCAAAAGCTACAATGACTAAAATTATAA
AAGAGATGTTGCCAGCAGATGTACGTGTTGCAAGAGATGCTCAAGATCTT
TTGATTGAGTGTTGTGTAGAGTTTATAAATCTTGTTTCCTCTGAGTCCAA
TGAAGTTTGCAGCAGGGAGGATAAAAGAACAATTGCTCCCGAGCATGTAC
TCAAGGCTTTGGAGGTTCTTGGGTTTGGTGAGTACATCGAGGAGGTCTAT
GCTGCATACGAGCAACACAAGCTTGAGACTATGGACTCGTTGAAAGGTGG
CAAATGGAGCAATGGGGCCGAGATGACGGAGGAAGAAGCAGCGGCTGAGC
AGCAGAGAATGTTTGCTGAGGCACGTGCACGAATGAACGGTGGAGCCGCT
GGCCCTCCCAAGCACCGGACATTACCCAAGTTTAGAGAGCTAACTACTAT
AGGACTTTTATTTTCTCCAGCATAGGCAGCATCCTGACTCTTTCTGTCTG
CC
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