CX295660

Overview
NameCX295660
Unique NameCX295660
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length710
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CX295660 vs. ExPASy Swiss-Prot
Match: FDL1_ARATH (F-box/FBD/LRR-repeat protein At1g13570 OS=Arabidopsis thaliana GN=At1g13570 PE=2 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 2.268e-27
Identity = 80/212 (37.74%), Postives = 118/212 (55.66%), Query Frame = 1 
Query:   25 SSSPTLERLTLMNFDGFTHLNIDAPNLQFFDIGGVFDDVTFENTFHLALVSIGLYVNGKNDQAMGPGNSCKLLRFFVHLPHIRRLEIQSYFLKYLAIGNVPSRLPRPCVDLNYLSI-RINFNDLEENLAALCLLRSSPNLQELEMLARP------EETGIGVLTNFWEVDHWTSLFSQLRMVKIVGISGIRSELEFIKFVLSNSPVLETMTI 639
            S  P LE L+L  FD    L+I APNL +  + G F D+  ENT  L  +S+ +Y++ ++       +   L++F   +P + +L    YF KYL+IG+ P RLP   + L  + + ++ F D +E L  L L+  SPNL+EL++ A P      EE G     + +E D++      L  VKI   SGIR ELEFI+F+L  SPVLET+T+
Sbjct:  177 SGCPLLEFLSLSYFDSLV-LSISAPNLMYLYLDGEFKDIFLENTPKLVAISVSMYMH-EDVTDFEQSSDYNLVKFLGGVPLLEKLVGYIYFTKYLSIGDDPGRLPLTYIHLKTIELYQVCFEDADEVLVLLRLVTHSPNLKELKVSASPVQPFPLEEEGF----DLFERDYFDYKLPSLESVKITDASGIRYELEFIRFLLGTSPVLETVTV 382
The following BLAST results are available for this feature:
BLAST of CX295660 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
FDL1_ARATH2.268e-2737.74F-box/FBD/LRR-repeat protein At1g13570 OS=Arabidop... [more]
back to top
Properties
Property NameValue
Genbank descriptionC05074E09SK DroRLeaf1 Citrus clementina cDNA clone C05074E09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295660 ID=CX295660; Name=CX295660; organism=Citrus clementina; type=EST; length=710bp
GATTCGGCCGAGGTGAACTTTAATTCAAGCAGCCCTACGCTTGAGAGGTT
GACGTTGATGAATTTTGATGGTTTCACCCATCTTAATATTGATGCACCTA
ATCTCCAATTTTTTGATATTGGAGGAGTTTTTGATGATGTTACCTTCGAG
AACACCTTCCATTTAGCTTTGGTTTCCATTGGCTTGTACGTAAATGGCAA
AAATGATCAAGCCATGGGTCCTGGAAATTCTTGTAAATTGCTAAGGTTCT
TTGTTCATCTTCCTCACATTCGAAGGCTTGAGATTCAGAGTTATTTTCTA
AAGTATTTGGCTATTGGCAACGTGCCAAGCAGGTTGCCTCGTCCATGTGT
TGATCTGAATTATCTTTCTATACGCATAAATTTCAATGACTTGGAAGAGA
ACCTTGCTGCGCTGTGCCTGTTGAGAAGTTCTCCTAATCTACAAGAACTA
GAGATGCTGGCTCGCCCAGAGGAGACTGGTATTGGTGTTCTCACCAACTT
TTGGGAAGTTGACCACTGGACCTCTCTGTTTTCCCAGCTGCGGATGGTGA
AAATAGTGGGCATCTCTGGCATTAGATCCGAATTGGAATTCATTAAATTT
GTGCTATCAAATTCACCTGTGCTTGAGACGATGACTATTAAACCTGCTTC
GCTAGAAGGAGGATGGGACCTAATCAAGAATTGTTGAGATTTCGGCGAGC
CTCTGCACGA
back to top