CX295678

Overview
NameCX295678
Unique NameCX295678
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length702
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX295678 vs. ExPASy Swiss-Prot
Match: U603_ARATH (UPF0603 protein At1g54780, chloroplastic OS=Arabidopsis thaliana GN=At1g54780 PE=1 SV=1)

HSP 1 Score: 218.394 bits (555), Expect = 2.963e-56
Identity = 116/191 (60.73%), Postives = 139/191 (72.77%), Query Frame = 3
Query:   63 SLHAQQQRQSSLFCTKNITCSLKKH-NPQLLNPSLQVPRSWFAHAQQGXXXXXXXXXXXXXXXXYTNGNALASEFDVLNEGPPKDSYLVDDAGVISKVTKSDLKQLLSDLESRKNFHINFITVRKLTIKADAFEYADQVLEKWYPSVEEGNNKGIVVLVTSQKEGAVTGGPAFVKAVGEEVLDATVAENLP 632
            SLH  +    SL  +K  T S  KH + +   P     R+W   A+QG                   G ALASEF++LN+GPPK++Y+VDDAGV+S+VTKSDLK+LLSDLE RK   +NFITVRKLT KADAFEYADQVLEKWYPS+EEGNNKGIVVL+TSQKEGA+TGGPAF++AVGE +LDATV+ENLP
Sbjct:   20 SLHQTKPTSHSLSLSKPTTFSGPKHLSTRFTKPE---SRNWLIDAKQGLAALALSLTLTFSPV----GTALASEFNILNDGPPKETYVVDDAGVLSRVTKSDLKKLLSDLEYRKKLRLNFITVRKLTSKADAFEYADQVLEKWYPSIEEGNNKGIVVLITSQKEGAITGGPAFIEAVGENILDATVSENLP 203          
BLAST of CX295678 vs. ExPASy Swiss-Prot
Match: U603_ORYSJ (UPF0603 protein Os05g0401100, chloroplastic OS=Oryza sativa subsp. japonica GN=Os05g0401100 PE=3 SV=1)

HSP 1 Score: 210.305 bits (534), Expect = 8.068e-54
Identity = 101/122 (82.79%), Postives = 117/122 (95.90%), Query Frame = 3
Query:  267 ALASEFDVLNEGPPKDSYLVDDAGVISKVTKSDLKQLLSDLESRKNFHINFITVRKLTIKADAFEYADQVLEKWYPSVEEGNNKGIVVLVTSQKEGAVTGGPAFVKAVGEEVLDATVAENLP 632
            A+ASEFDVLN GPP+D+Y+VDDAGV+S+VTKSD+K+L+ DLESRKN  INFITVRKLT KADAFEYADQVLEKWYP+VEEGNNKGIVVLVTSQKEGA+TGGPAFV+AVG+E+LD+TV+ENLP
Sbjct:   96 AVASEFDVLNGGPPEDTYVVDDAGVLSRVTKSDVKRLVRDLESRKNIRINFITVRKLTSKADAFEYADQVLEKWYPTVEEGNNKGIVVLVTSQKEGAITGGPAFVQAVGDEILDSTVSENLP 217          
BLAST of CX295678 vs. ExPASy Swiss-Prot
Match: U603_ORYSI (UPF0603 protein OsI_019212, chloroplastic OS=Oryza sativa subsp. indica GN=OsI_19898 PE=3 SV=2)

HSP 1 Score: 210.305 bits (534), Expect = 8.068e-54
Identity = 101/122 (82.79%), Postives = 117/122 (95.90%), Query Frame = 3
Query:  267 ALASEFDVLNEGPPKDSYLVDDAGVISKVTKSDLKQLLSDLESRKNFHINFITVRKLTIKADAFEYADQVLEKWYPSVEEGNNKGIVVLVTSQKEGAVTGGPAFVKAVGEEVLDATVAENLP 632
            A+ASEFDVLN GPP+D+Y+VDDAGV+S+VTKSD+K+L+ DLESRKN  INFITVRKLT KADAFEYADQVLEKWYP+VEEGNNKGIVVLVTSQKEGA+TGGPAFV+AVG+E+LD+TV+ENLP
Sbjct:   96 AVASEFDVLNGGPPEDTYVVDDAGVLSRVTKSDVKRLVRDLESRKNIRINFITVRKLTSKADAFEYADQVLEKWYPTVEEGNNKGIVVLVTSQKEGAITGGPAFVQAVGDEILDSTVSENLP 217          
The following BLAST results are available for this feature:
BLAST of CX295678 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
U603_ARATH2.963e-5660.73UPF0603 protein At1g54780, chloroplastic OS=Arabid... [more]
U603_ORYSJ8.068e-5482.79UPF0603 protein Os05g0401100, chloroplastic OS=Ory... [more]
U603_ORYSI8.068e-5482.79UPF0603 protein OsI_019212, chloroplastic OS=Oryza... [more]
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Properties
Property NameValue
Genbank descriptionC05074G04SK DroRLeaf1 Citrus clementina cDNA clone C05074G04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295678 ID=CX295678; Name=CX295678; organism=Citrus clementina; type=EST; length=702bp
TTCTCCTTCATCTCTCCATTTCTCACCCAAAACCTTCTTCTTCGAAGACC
CTTTTCTCACCTTCTCTACATGCACAGCAGCAAAGACAAAGTTCTCTTTT
TTGCACCAAAAACATCACTTGCAGCCTCAAAAAACACAACCCTCAGTTAC
TAAATCCATCTTTACAGGTACCCAGAAGCTGGTTTGCTCATGCACAGCAA
GGGCTGGCAGCTCTGGCTCTCTCTTTGGCACTCAGTTTTAGCCCATTACT
GTACACTAATGGCAATGCACTTGCTTCTGAGTTTGATGTGCTCAATGAGG
GCCCACCAAAAGATTCCTATTTAGTTGATGATGCAGGTGTGATTAGTAAA
GTTACAAAATCTGATTTGAAGCAGCTTTTGTCAGATTTGGAGTCGAGGAA
GAACTTCCACATTAACTTCATCACTGTTAGGAAGCTCACTATCAAAGCTG
ATGCTTTTGAGTATGCTGACCAAGTATTAGAGAAGTGGTATCCTAGTGTT
GAAGAGGGCAATAACAAGGGCATTGTTGTGCTAGTTACTAGTCAAAAGGA
GGGGGCAGTCACAGGTGGTCCTGCATTCGTCAAAGCTGTTGGTGAAGAAG
TTCTTGATGCTACCGTAGCTGAGAACCTTCCTGGNTACTATCCATTTTAT
TTTTCATGCTTGATGTTCCGAGTTTTATTATTGATTTCATCACATGCTTG
GT
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