CX295692

Overview
NameCX295692
Unique NameCX295692
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length618
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9469 contig Ccv1_Contig9469:32..649. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX295692 vs. ExPASy Swiss-Prot
Match: HS22C_PETHY (Small heat shock protein, chloroplastic OS=Petunia hybrida GN=HSP22 PE=2 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 5.365e-21
Identity = 62/168 (36.90%), Postives = 97/168 (57.74%), Query Frame = 2
Query:  107 NRDFCGRIKAVADNRGSLDHLQRSSLNQSQPKKRAAPVSSPGIWDSFPAARTVQQMMETMERIMEDPFAYGVTWPSQQERVRSGYRRGRTPWAIRETENDYKIRLDVPGMSRNDVKVRVEESMLVIKAEKAQRNEANTDGSTVEEEEEWPSNGYGSYSTRIALPDNVE 610
            N+D    +    +N+G  +   + S  + +P++ A  VS  G+ D     RT++QMM+TM+R+ ED     +T+P  + R   G    R PW I++ EN+ K+R D+PG+S+ +VKV VE+ +LVIK E  ++ E+  D S       W  N Y SY TR++LPDNV+
Sbjct:   61 NKDTSVDVHVSNNNQGGNN---QGSAVERRPRRMALDVSPFGLLDPMSPMRTMRQMMDTMDRLFEDT----MTFPGSRNR---GTGEIRAPWDIKDDENEIKMRFDMPGLSKEEVKVSVEDDVLVIKGEH-KKEESGKDDS-------WGRN-YSSYDTRLSLPDNVD 209          
BLAST of CX295692 vs. ExPASy Swiss-Prot
Match: HS21C_SOLLC (Small heat shock protein, chloroplastic OS=Solanum lycopersicum GN=HSP21 PE=2 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 7.007e-21
Identity = 61/168 (36.31%), Postives = 90/168 (53.57%), Query Frame = 2
Query:  131 KAVADNRGSLDHLQRSSLN---------QSQPKKRAAPVSSPGIWDSFPAARTVQQMMETMERIMEDPFAYGVTWPSQQERVRSGYRRGRTPWAIRETENDYKIRLDVPGMSRNDVKVRVEESMLVIKAEKAQRNEANTDGSTVEEEEEWPSNGYGSYSTRIALPDNV 607
            +A  DN+ +   +  SS           + +P + A  VS  G+ D     RT++QM++TM+R+ ED     +T+P +     SG    RTPW I + EN+ K+R D+PG+S+ DVKV VE  MLVIK E  +  +         ++  W  N Y SY TR++LPDNV
Sbjct:   49 RATGDNKDTSVDVHHSSAQGGNNQGTAVERRPTRMALDVSPFGVLDPMSPMRTMRQMIDTMDRLFEDT----MTFPGRNRA--SGTGEIRTPWDIHDDENEIKMRFDMPGLSKEDVKVSVENDMLVIKGEHKKEEDG-------RDKHSWGRN-YSSYDTRLSLPDNV 202          
BLAST of CX295692 vs. ExPASy Swiss-Prot
Match: HS25P_ARATH (25.3 kDa heat shock protein, chloroplastic OS=Arabidopsis thaliana GN=HSP25.3 PE=2 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 2.039e-20
Identity = 64/200 (32.00%), Postives = 100/200 (50.00%), Query Frame = 2
Query:   38 ICTPCASEIITGFPSYRSPPLLRNRDFCGRIKAVADNRGSLDHLQR--------SSLNQSQPKKRAAPVSSPGIWDSFPAARTVQQMMETMERIMEDPFAYGVTWP-SQQERVRSGYRRGRTPWAIRETENDYKIRLDVPGMSRNDVKVRVEESMLVIKAEKAQRNEANTDGSTVEEEEEWPSNGYGSYSTRIALPDNVE 610
            +C+P A        S     +   R    RI+A      S+D +Q+        SS+ +   ++    VS  G+ D     RT++QM++TM+R+ ED      T P S + R  SG    R PW I+E E++ K+R D+PG+S+ DVK+ VE+++LVIK E+ +           + ++ W      SY TR+ LPDN E
Sbjct:   12 LCSPLAPSPSVSSKSATPFSVSFPRKIPSRIRAQDQRENSIDVVQQGQQKGNQGSSVEKRPQQRLTMDVSPFGLLDPLSPMRTMRQMLDTMDRMFED------TMPVSGRNRGGSGVSEIRAPWDIKEEEHEIKMRFDMPGLSKEDVKISVEDNVLVIKGEQKKE----------DSDDSWSGRSVSSYGTRLQLPDNCE 195          
BLAST of CX295692 vs. ExPASy Swiss-Prot
Match: HS21C_PEA (Small heat shock protein, chloroplastic OS=Pisum sativum GN=HSP21 PE=2 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 1.726e-19
Identity = 63/209 (30.14%), Postives = 105/209 (50.24%), Query Frame = 2
Query:    8 IS*KMASHLGICTPCASEIITGFPSYRSPPLLRNRDFCGRIKAVADNRGSLDHLQRSSLN------QSQPKKRAAPVSSPGIWDSFPAARTVQQMMETMERIMEDPFAYGVTWPSQQERVRSGYRRGRTPWAIRETENDYKIRLDVPGMSRNDVKVRVEESMLVIKAEKAQRNEANTDGSTVEEEEEWPSNGYGSYSTRIALPDNVEFE 616
            +S K  S +    PC    +  FP  R  P L  R+   +     DN+ +   + R + +      + +P++ +  +S  G+ D +   R+++QM++TM+RI ED     +T P +      G    R PW I++ E++ ++R D+PG+S+ DVKV VE+ +LVIK++  + N           E+ W    Y  Y TR+ LPDN E E
Sbjct:   15 LSQKPGSSVKSTPPC----MASFPLRRQLPRLGLRNVRAQAGGDGDNKDNSVEVHRVNKDDQGTAVERKPRRSSIDISPFGLLDPWSPMRSMRQMLDTMDRIFED----AITIPGRN----IGGGEIRVPWEIKDEEHEIRMRFDMPGVSKEDVKVSVEDDVLVIKSDHREENGG---------EDCWSRKSYSCYDTRLKLPDNCEKE 202          
BLAST of CX295692 vs. ExPASy Swiss-Prot
Match: HS22C_SOYBN (Small heat shock protein, chloroplastic (Fragment) OS=Glycine max GN=HSP22 PE=2 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 2.944e-19
Identity = 54/159 (33.96%), Postives = 86/159 (54.09%), Query Frame = 2
Query:  143 DNRGSLDHLQRSSLN---QSQPKKRAAPVSSPGIWDSFPAARTVQQMMETMERIMEDPFAYGVTWPSQQERVRSGYRRGRTPWAIRETENDYKIRLDVPGMSRNDVKVRVEESMLVIKAEKAQRNEANTDGSTVEEEEEWPSNGYGSYSTRIALPDNVE 610
            DN   + H+ +       + +P++ A  +S  GI D +   R+++Q+++TM+R+ ED     +T+P +      G    R PW I++ E++ ++R D+PG+++ DVKV VE+ MLVIK       E   D S       W S  Y SY TR+ LPDN E
Sbjct:    6 DNSVEVQHVSKGDQGTAVEKKPRRTAMDISPFGILDPWSPMRSMRQILDTMDRVFEDT----MTFPGRN----IGGGEIRAPWDIKDEEHEIRMRFDMPGLAKEDVKVSVEDDMLVIKGGHKSEQEHGGDDS-------WSSRTYSSYDTRLKLPDNCE 149          
BLAST of CX295692 vs. ExPASy Swiss-Prot
Match: HS21C_WHEAT (Small heat shock protein, chloroplastic OS=Triticum aestivum GN=HSP21 PE=2 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.047e-16
Identity = 53/158 (33.54%), Postives = 85/158 (53.80%), Query Frame = 2
Query:  140 ADNRGSLDHLQRSSLNQSQPKKRAAPVSSPGIWDSFPAARTVQQMMETMERIMEDPFAYGVTWPSQQERVRSGYRRGRTPWAIRETENDYKIRLDVPGMSRNDVKVRVEESMLVIKAE-KAQRNEANTDGSTVEEEEEWPSNGYGSYSTRIALPDNVE 610
            A N G+    Q+ +  Q +P++    +S  G+ D     RT++QM++TM+R+ +D     V +P++  R  +   R R PW I E E + K+R D+PG+SR +V+V VE+  LVI+ E K +  E   +G     +  W      SY  R+ALPD  +
Sbjct:   63 AQNAGN----QQGNAVQRRPRRAGFDISPFGLVDPMSPMRTMRQMLDTMDRLFDD----AVGFPTR--RSPAARARRRMPWDIMEDEKEVKMRFDMPGLSREEVRVMVEDDALVIRGEHKKEAGEGQGEGG----DGWWKERSVSSYDMRLALPDECD 206          
BLAST of CX295692 vs. ExPASy Swiss-Prot
Match: HS26P_ORYSJ (26.7 kDa heat shock protein, chloroplastic OS=Oryza sativa subsp. japonica GN=HSP26.7 PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.280e-14
Identity = 48/150 (32.00%), Postives = 82/150 (54.67%), Query Frame = 2
Query:  170 QRSSLNQSQPKKRAA--PVSSPGIWDSFPAARTVQQMMETMERIMEDPFAYGVTWPSQQER-VRSGYRRGRTPWAIRETENDYKIRLDVPGMSRNDVKVRVEESMLVIKAEKAQRNEANTDGSTVEEEEEWPSNGYGSYSTRIALPDNVE 610
            Q+ +  Q +P++ +A   +S  G+ D     RT++QM++TM+RI +D     + +P+   R + +G    R PW + E + + ++R D+PG+SR +VKV VE+  LVI+ E  +      +GS    +  W      SY  R+ALPD  +
Sbjct:   67 QQGNAVQRRPRRSSALDGISPFGLVDPMSPMRTMRQMLDTMDRIFDD---VALGFPATPRRSLATG--EVRMPWDVMEDDKEVRMRFDMPGLSREEVKVMVEDDALVIRGEHKKEEGEGAEGS---GDGWWKERSVSSYDMRLALPDECD 208          
BLAST of CX295692 vs. ExPASy Swiss-Prot
Match: HS23C_CHERU (Small heat shock protein, chloroplastic OS=Chenopodium rubrum GN=HSP23 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.324e-11
Identity = 46/145 (31.72%), Postives = 73/145 (50.34%), Query Frame = 2
Query:  200 KKRAAPVSSPG---------IWDSFPAARTVQQMMETMERIMEDPFAYGVTWPSQQERVRSGYRRGRTPWAIRETENDYKIRLDVPGMSRNDVKVRVEESMLVIKAEKAQRNEANTDGSTVEEEEEWPSNGYGSYSTRIALPDNV 607
            +   AP+S  G         ++D F A R+V Q+M  M+++ME+PF             R   R  R  W +RE E   ++++D+PG+++ DVKV VE++ L+IK+E  +  E        EEE+         YS+RI L  N+
Sbjct:   47 RSNRAPISRRGDFPASFFSDVFDPFRATRSVGQLMNLMDQLMENPF---------MAASRGSGRAMRRGWDVREDEEALELKVDMPGLAKEDVKVSVEDNTLIIKSEAEKETE--------EEEQR------RRYSSRIELTPNL 168          
BLAST of CX295692 vs. ExPASy Swiss-Prot
Match: HS23M_ARATH (23.6 kDa heat shock protein, mitochondrial OS=Arabidopsis thaliana GN=HSP23.6 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 3.854e-11
Identity = 44/140 (31.43%), Postives = 74/140 (52.86%), Query Frame = 2
Query:  188 QSQPKKRAAPVSSPGIWDSFPAARTVQQMMETMERIMEDPFAYGVTWPSQQERVRSGYRRGRTPWAIRETENDYKIRLDVPGMSRNDVKVRVEESMLVIKAEKAQRNEANTDGSTVEEEEEWPSNGYGSYSTRIALPDNV 607
            +S P++R    S   ++D F   R+V Q++  M++ ME+P        + +    SG RRG   W I+E ++   +R+D+PG+SR DVK+ +E+  LVI+ E          G   E+  E   +G   +++RI LPD +
Sbjct:   55 RSVPRRRGDFFSD--VFDPFSPTRSVSQVLNLMDQFMENPLL-----SATRGMGASGARRG---WDIKEKDDALYLRIDMPGLSREDVKLALEQDTLVIRGE----------GKNEEDGGEEGESGNRRFTSRIGLPDKI 174          
The following BLAST results are available for this feature:
BLAST of CX295692 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 9
Match NameE-valueIdentityDescription
HS22C_PETHY5.365e-2136.90Small heat shock protein, chloroplastic OS=Petunia... [more]
HS21C_SOLLC7.007e-2136.31Small heat shock protein, chloroplastic OS=Solanum... [more]
HS25P_ARATH2.039e-2032.0025.3 kDa heat shock protein, chloroplastic OS=Arab... [more]
HS21C_PEA1.726e-1930.14Small heat shock protein, chloroplastic OS=Pisum s... [more]
HS22C_SOYBN2.944e-1933.96Small heat shock protein, chloroplastic (Fragment)... [more]
HS21C_WHEAT1.047e-1633.54Small heat shock protein, chloroplastic OS=Triticu... [more]
HS26P_ORYSJ1.280e-1432.0026.7 kDa heat shock protein, chloroplastic OS=Oryz... [more]
HS23C_CHERU1.324e-1131.72Small heat shock protein, chloroplastic OS=Chenopo... [more]
HS23M_ARATH3.854e-1131.4323.6 kDa heat shock protein, mitochondrial OS=Arab... [more]
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Properties
Property NameValue
Genbank descriptionC05074H06SK DroRLeaf1 Citrus clementina cDNA clone C05074H06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295692 ID=CX295692; Name=CX295692; organism=Citrus clementina; type=EST; length=618bp
AAAAACTATATCTTAGAAAATGGCATCTCATCTTGGTATCTGTACTCCCT
GTGCGTCCGAAATAATCACCGGTTTTCCCAGCTACAGGTCTCCACCTTTG
TTGAGAAATAGAGACTTTTGTGGCAGGATAAAGGCCGTGGCAGATAACAG
AGGCAGCCTTGATCACTTGCAAAGATCGTCGCTGAATCAATCCCAGCCAA
AAAAGAGAGCGGCCCCAGTTTCATCTCCAGGGATATGGGATAGTTTTCCT
GCTGCGAGGACGGTGCAACAGATGATGGAAACCATGGAAAGAATAATGGA
GGATCCTTTTGCTTACGGAGTCACTTGGCCTTCACAACAAGAAAGGGTGA
GAAGTGGATACAGACGGGGAAGAACGCCTTGGGCCATCAGGGAAACGGAA
AACGACTACAAGATTAGGTTAGACGTGCCTGGCATGAGCAGGAATGATGT
TAAGGTACGGGTTGAAGAGAGCATGCTCGTAATCAAGGCAGAAAAGGCTC
AAAGGAACGAAGCAAACACTGATGGAAGTACAGTTGAGGAAGAAGAAGAG
TGGCCAAGCAATGGTTACGGAAGCTACAGCACTAGAATTGCATTGCCTGA
CAACGTAGAGTTTGAGAA
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