CX295706

Overview
NameCX295706
Unique NameCX295706
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length696
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX295706 vs. ExPASy Swiss-Prot
Match: C3H16_ORYSJ (Zinc finger CCCH domain-containing protein 16 OS=Oryza sativa subsp. japonica GN=Os02g0557500 PE=2 SV=2)

HSP 1 Score: 254.988 bits (650), Expect = 2.832e-67
Identity = 110/128 (85.94%), Postives = 122/128 (95.31%), Query Frame = 1
Query:  244 DVHTEFLKFGEIVNFKVCRNGSSHLRGNVYVHYKSLESAVLAYRSVNGRYFAGKQITCEFINVTRWKIAICGEYMKSRLKTCSRGMACNFIHCFRNPGGDYEWADWDKPPPRYWVKKMAALFGDSDES 627
            DVHTEFLKFGE+VNFKVCRNGS HLRGNVYVHYKSL+SA++AY S+NGRYFAGKQITCEF+ VTRWK+AICGEYM+SR KTCSRG+ACNFIHCFRNPGGDYEWADWD PPPRYW++KMAALFG SD+S
Sbjct:  233 DVHTEFLKFGELVNFKVCRNGSLHLRGNVYVHYKSLDSALIAYSSMNGRYFAGKQITCEFVAVTRWKVAICGEYMRSRFKTCSRGIACNFIHCFRNPGGDYEWADWDNPPPRYWIRKMAALFGPSDDS 360          
BLAST of CX295706 vs. ExPASy Swiss-Prot
Match: C3H5_ARATH (Zinc finger CCCH domain-containing protein 5 OS=Arabidopsis thaliana GN=At1g10320 PE=2 SV=2)

HSP 1 Score: 250.751 bits (639), Expect = 5.342e-66
Identity = 112/161 (69.57%), Postives = 129/161 (80.12%), Query Frame = 1
Query:  199 YTDXXXXXXXXXXXXDVHTEFLKFGEIVNFKVCRNGSSHLRGNVYVHYKSLESAVLAYRSVNGRYFAGKQITCEFINVTRWKIAICGEYMKSRLKTCSRGMACNFIHCFRNPGGDYEWADWDKPPPRYWVKKMAALFGDSDESGTWNQERSGQTRNKIDSL 681
            YTD            DVHTEFLK+GE+VNFKVCRNGS HL+GNVYVHY+SLESA+LAY+S+NGRYFAGKQ+ CEF+N++RWK+AICGEYMKSRLKTCSRG ACNFIHCFRNPGGDYEWAD D+PPPR+W+ KM +LFG SDE      E SG   + I  L
Sbjct:  295 YTDEEAELCYEEFYEDVHTEFLKYGELVNFKVCRNGSFHLKGNVYVHYRSLESAILAYQSINGRYFAGKQVNCEFVNISRWKVAICGEYMKSRLKTCSRGSACNFIHCFRNPGGDYEWADHDRPPPRFWIHKMTSLFGYSDEK-HMEHESSGSLNDSISDL 454          
BLAST of CX295706 vs. ExPASy Swiss-Prot
Match: U2AFM_MOUSE (U2 small nuclear ribonucleoprotein auxiliary factor 35 kDa subunit-related protein 2 OS=Mus musculus GN=Zrsr2 PE=2 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 4.138e-26
Identity = 61/148 (41.22%), Postives = 82/148 (55.41%), Query Frame = 1
Query:  244 DVHTEFLKFGEIVNFKVCRNGSSHLRGNVYVHYKSLESAVLAYRSVNGRYFAGKQITCEFINVTRWKIAICGEYMKSRLKTCSRGMACNFIHCFRNPGGDYEWADWDKPPPRYWVKKMAALFGDSDESGTWNQERSGQTRNKIDSLMP 687
            DV  EF   G+++ FKV  N   HLRGNVYV Y+S E    A+   NGR++AG+Q+ CEF  VTRWK+AICG +    ++ C RG  CNF+H FRNP  +Y  A+ D  P   W         +  E  +   E  G++R +  S  P
Sbjct:  246 DVLPEFKSVGKVIQFKVSCNLEPHLRGNVYVQYQSEEDCQAAFSVFNGRWYAGRQLQCEFCPVTRWKMAICGLF---EVQQCPRGKHCNFLHVFRNPNNEYRDANRDLYPSPDWTSSSFGKNSERRERASHYDEYYGRSRRRRRSPSP 390          
BLAST of CX295706 vs. ExPASy Swiss-Prot
Match: U2AFL_MOUSE (U2 small nuclear ribonucleoprotein auxiliary factor 35 kDa subunit-related protein 1 OS=Mus musculus GN=Zrsr1 PE=2 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 2.510e-23
Identity = 51/107 (47.66%), Postives = 68/107 (63.55%), Query Frame = 1
Query:  244 DVHTEFLKFGEIVNFKVCRNGSSHLRGNVYVHYKSLESAVLAYRSVNGRYFAGKQITCEFINVTRWKIAICGEYMKSRLKTCSRGMACNFIHCFRNPGGDYEWADWD 564
            DV  EF   G+++ FKV  N   HLRGNVYV Y+S E    A    NGR++AG+Q+ CEF  VTRWK+AICG +    ++ C +G  CNF+H FRNP  ++  A+ D
Sbjct:  233 DVLPEFKNVGKVIQFKVSCNLEPHLRGNVYVQYQSEEECQAALSLFNGRWYAGRQLQCEFCPVTRWKVAICGLF---EMQKCPKGKHCNFLHVFRNPNNEFREANRD 336          
BLAST of CX295706 vs. ExPASy Swiss-Prot
Match: U2AFM_HUMAN (U2 small nuclear ribonucleoprotein auxiliary factor 35 kDa subunit-related protein 2 OS=Homo sapiens GN=ZRSR2 PE=1 SV=2)

HSP 1 Score: 108.227 bits (269), Expect = 4.282e-23
Identity = 52/107 (48.60%), Postives = 68/107 (63.55%), Query Frame = 1
Query:  244 DVHTEFLKFGEIVNFKVCRNGSSHLRGNVYVHYKSLESAVLAYRSVNGRYFAGKQITCEFINVTRWKIAICGEYMKSRLKTCSRGMACNFIHCFRNPGGDYEWADWD 564
            DV  EF   G+++ FKV  N   HLRGNVYV Y+S E    A    NGR++AG+Q+ CEF  VTRWK+AICG +    ++ C RG  CNF+H FRNP  ++  A+ D
Sbjct:  242 DVLPEFKNVGKVIQFKVSCNLEPHLRGNVYVQYQSEEECQAALSLFNGRWYAGRQLQCEFCPVTRWKMAICGLF---EIQQCPRGKHCNFLHVFRNPNNEFWEANRD 345          
BLAST of CX295706 vs. ExPASy Swiss-Prot
Match: U2AFL_HUMAN (U2 small nuclear ribonucleoprotein auxiliary factor 35 kDa subunit-related protein 1 OS=Homo sapiens GN=ZRSR1 PE=2 SV=2)

HSP 1 Score: 108.227 bits (269), Expect = 4.282e-23
Identity = 52/107 (48.60%), Postives = 68/107 (63.55%), Query Frame = 1
Query:  244 DVHTEFLKFGEIVNFKVCRNGSSHLRGNVYVHYKSLESAVLAYRSVNGRYFAGKQITCEFINVTRWKIAICGEYMKSRLKTCSRGMACNFIHCFRNPGGDYEWADWD 564
            DV  EF   G+++ FKV  N   HLRGNVYV Y+S E    A    NGR++AG+Q+ CEF  VTRWK+AICG +    ++ C RG  CNF+H FRNP  ++  A+ D
Sbjct:  247 DVLPEFKNVGKVIQFKVSCNLEPHLRGNVYVQYQSEEECQAALSLFNGRWYAGRQLQCEFCPVTRWKMAICGLF---EIQQCPRGKHCNFLHVFRNPNNEFWEANRD 350          
BLAST of CX295706 vs. ExPASy Swiss-Prot
Match: U2AFB_ORYSJ (Splicing factor U2af small subunit B OS=Oryza sativa subsp. japonica GN=U2AF35B PE=2 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 3.633e-14
Identity = 35/92 (38.04%), Postives = 59/92 (64.13%), Query Frame = 1
Query:  244 DVHTEFLKFGEIVNFKVCRNGSSHLRGNVYVHYKSLESAVLAYRSVNGRYFAGKQITCEFINVTRWKIAICGEYMKSRLKTCSRGMACNFIH 519
            D++ E  KFGE+    VC N + H+ GNVYV ++  E AV A+ ++ GR+++G+ I  E+  VT ++ A C ++ ++   +C+RG  CNF+H
Sbjct:   84 DIYEELSKFGEVETLNVCDNLADHMIGNVYVQFREEEQAVAAHNALQGRFYSGRPIIVEYSPVTDFREATCRQFEEN---SCNRGGYCNFMH 172          
BLAST of CX295706 vs. ExPASy Swiss-Prot
Match: U2AFA_ORYSJ (Splicing factor U2af small subunit A OS=Oryza sativa subsp. japonica GN=U2AF35A PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.355e-13
Identity = 35/92 (38.04%), Postives = 58/92 (63.04%), Query Frame = 1
Query:  244 DVHTEFLKFGEIVNFKVCRNGSSHLRGNVYVHYKSLESAVLAYRSVNGRYFAGKQITCEFINVTRWKIAICGEYMKSRLKTCSRGMACNFIH 519
            D+  E  K+GEI +  VC N + H+ GNVYV ++  + A  A +++ GRY++G+ I  EF  V+ ++ A C +Y ++   +C+RG  CNF+H
Sbjct:   84 DIFEELSKYGEIESLHVCDNFADHMIGNVYVQFREEDQAARALQALTGRYYSGRPIIVEFSPVSDFREATCRQYEEN---SCNRGGYCNFMH 172          
BLAST of CX295706 vs. ExPASy Swiss-Prot
Match: U2AFB_ARATH (Splicing factor U2af small subunit B OS=Arabidopsis thaliana GN=U2AF35B PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 3.076e-13
Identity = 35/92 (38.04%), Postives = 58/92 (63.04%), Query Frame = 1
Query:  244 DVHTEFLKFGEIVNFKVCRNGSSHLRGNVYVHYKSLESAVLAYRSVNGRYFAGKQITCEFINVTRWKIAICGEYMKSRLKTCSRGMACNFIH 519
            D+  E  KFGE+ +  VC N + H+ GNVYV +K  + A  A +++ GR+++G+ I  +F  VT ++ A C +Y ++   +C+RG  CNF+H
Sbjct:   84 DIFEELNKFGEVESLNVCDNLADHMIGNVYVLFKEEDHAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEEN---SCNRGGYCNFMH 172          
BLAST of CX295706 vs. ExPASy Swiss-Prot
Match: U2AFA_ARATH (Splicing factor U2af small subunit A OS=Arabidopsis thaliana GN=U2AF35A PE=1 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 3.076e-13
Identity = 35/92 (38.04%), Postives = 57/92 (61.96%), Query Frame = 1
Query:  244 DVHTEFLKFGEIVNFKVCRNGSSHLRGNVYVHYKSLESAVLAYRSVNGRYFAGKQITCEFINVTRWKIAICGEYMKSRLKTCSRGMACNFIH 519
            D+  E  KFGEI +  +C N + H+ GNVYV +K  + A  A +++ GR+++G+ I  +F  VT ++ A C +Y ++    C+RG  CNF+H
Sbjct:   84 DLFEELGKFGEIESLNICDNLADHMIGNVYVQFKEEDQAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEEN---NCNRGGYCNFMH 172          
The following BLAST results are available for this feature:
BLAST of CX295706 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 11
Match NameE-valueIdentityDescription
C3H16_ORYSJ2.832e-6785.94Zinc finger CCCH domain-containing protein 16 OS=O... [more]
C3H5_ARATH5.342e-6669.57Zinc finger CCCH domain-containing protein 5 OS=Ar... [more]
U2AFM_MOUSE4.138e-2641.22U2 small nuclear ribonucleoprotein auxiliary facto... [more]
U2AFL_MOUSE2.510e-2347.66U2 small nuclear ribonucleoprotein auxiliary facto... [more]
U2AFM_HUMAN4.282e-2348.60U2 small nuclear ribonucleoprotein auxiliary facto... [more]
U2AFL_HUMAN4.282e-2348.60U2 small nuclear ribonucleoprotein auxiliary facto... [more]
U2AFB_ORYSJ3.633e-1438.04Splicing factor U2af small subunit B OS=Oryza sati... [more]
U2AFA_ORYSJ2.355e-1338.04Splicing factor U2af small subunit A OS=Oryza sati... [more]
U2AFB_ARATH3.076e-1338.04Splicing factor U2af small subunit B OS=Arabidopsi... [more]
U2AFA_ARATH3.076e-1338.04Splicing factor U2af small subunit A OS=Arabidopsi... [more]

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Properties
Property NameValue
Genbank descriptionC05075A08SK DroRLeaf1 Citrus clementina cDNA clone C05075A08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295706 ID=CX295706; Name=CX295706; organism=Citrus clementina; type=EST; length=696bp
GATTCGGCCGAGGCCTCGCTGCCGAAACCTATTTACTGACACATGCTGTT
GGTGCTCTTCATTTTACTTAGAATGTGTCGGGGGAGACAGAAAGCGGGAG
AAAAAGAAGTTGCTTTGATTGATGCAAATTAAATTGGTTGAACACATGAT
AGGTTTCATTTCAGTCTATTATACAGATGAGAAAATATTAGCCATTAGTA
TACAGATGAAGAAGTTGAACGCTCTTATGAAGAATTTTATGAGGATGTTC
ATACGGAGTTCCTGAAGTTTGGTGAAATTGTCAATTTCAAGGTGTGTAGA
AATGGTTCTTCCCACTTGAGAGGAAATGTCTATGTTCACTATAAGTCGCT
GGAATCAGCTGTCCTTGCTTATCGTTCTGTCAATGGTCGTTACTTCGCTG
GAAAACAGATCACATGTGAATTTATTAATGTGACCAGATGGAAGATTGCC
ATATGTGGCGAATATATGAAGTCAAGACTAAAGACATGCTCTCGTGGAAT
GGCTTGCAATTTTATCCACTGTTTCCGCAACCCTGGTGGAGACTATGAAT
GGGCTGATTGGGATAAACCACCTCCGAGATATTGGGTGAAAAAGATGGCT
GCTTTATTTGGTGATTCTGATGAATCTGGGACCTGGAATCAAGAGCGCTC
GGGACAAACGAGGAACAAGATAGATTCACTAATGCCGACAGGCGTC
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