CX295706
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX295706 vs. ExPASy Swiss-Prot
Match: C3H16_ORYSJ (Zinc finger CCCH domain-containing protein 16 OS=Oryza sativa subsp. japonica GN=Os02g0557500 PE=2 SV=2) HSP 1 Score: 254.988 bits (650), Expect = 2.832e-67 Identity = 110/128 (85.94%), Postives = 122/128 (95.31%), Query Frame = 1 Query: 244 DVHTEFLKFGEIVNFKVCRNGSSHLRGNVYVHYKSLESAVLAYRSVNGRYFAGKQITCEFINVTRWKIAICGEYMKSRLKTCSRGMACNFIHCFRNPGGDYEWADWDKPPPRYWVKKMAALFGDSDES 627 DVHTEFLKFGE+VNFKVCRNGS HLRGNVYVHYKSL+SA++AY S+NGRYFAGKQITCEF+ VTRWK+AICGEYM+SR KTCSRG+ACNFIHCFRNPGGDYEWADWD PPPRYW++KMAALFG SD+S Sbjct: 233 DVHTEFLKFGELVNFKVCRNGSLHLRGNVYVHYKSLDSALIAYSSMNGRYFAGKQITCEFVAVTRWKVAICGEYMRSRFKTCSRGIACNFIHCFRNPGGDYEWADWDNPPPRYWIRKMAALFGPSDDS 360
BLAST of CX295706 vs. ExPASy Swiss-Prot
Match: C3H5_ARATH (Zinc finger CCCH domain-containing protein 5 OS=Arabidopsis thaliana GN=At1g10320 PE=2 SV=2) HSP 1 Score: 250.751 bits (639), Expect = 5.342e-66 Identity = 112/161 (69.57%), Postives = 129/161 (80.12%), Query Frame = 1 Query: 199 YTDXXXXXXXXXXXXDVHTEFLKFGEIVNFKVCRNGSSHLRGNVYVHYKSLESAVLAYRSVNGRYFAGKQITCEFINVTRWKIAICGEYMKSRLKTCSRGMACNFIHCFRNPGGDYEWADWDKPPPRYWVKKMAALFGDSDESGTWNQERSGQTRNKIDSL 681 YTD DVHTEFLK+GE+VNFKVCRNGS HL+GNVYVHY+SLESA+LAY+S+NGRYFAGKQ+ CEF+N++RWK+AICGEYMKSRLKTCSRG ACNFIHCFRNPGGDYEWAD D+PPPR+W+ KM +LFG SDE E SG + I L Sbjct: 295 YTDEEAELCYEEFYEDVHTEFLKYGELVNFKVCRNGSFHLKGNVYVHYRSLESAILAYQSINGRYFAGKQVNCEFVNISRWKVAICGEYMKSRLKTCSRGSACNFIHCFRNPGGDYEWADHDRPPPRFWIHKMTSLFGYSDEK-HMEHESSGSLNDSISDL 454
BLAST of CX295706 vs. ExPASy Swiss-Prot
Match: U2AFM_MOUSE (U2 small nuclear ribonucleoprotein auxiliary factor 35 kDa subunit-related protein 2 OS=Mus musculus GN=Zrsr2 PE=2 SV=1) HSP 1 Score: 118.242 bits (295), Expect = 4.138e-26 Identity = 61/148 (41.22%), Postives = 82/148 (55.41%), Query Frame = 1 Query: 244 DVHTEFLKFGEIVNFKVCRNGSSHLRGNVYVHYKSLESAVLAYRSVNGRYFAGKQITCEFINVTRWKIAICGEYMKSRLKTCSRGMACNFIHCFRNPGGDYEWADWDKPPPRYWVKKMAALFGDSDESGTWNQERSGQTRNKIDSLMP 687 DV EF G+++ FKV N HLRGNVYV Y+S E A+ NGR++AG+Q+ CEF VTRWK+AICG + ++ C RG CNF+H FRNP +Y A+ D P W + E + E G++R + S P Sbjct: 246 DVLPEFKSVGKVIQFKVSCNLEPHLRGNVYVQYQSEEDCQAAFSVFNGRWYAGRQLQCEFCPVTRWKMAICGLF---EVQQCPRGKHCNFLHVFRNPNNEYRDANRDLYPSPDWTSSSFGKNSERRERASHYDEYYGRSRRRRRSPSP 390
BLAST of CX295706 vs. ExPASy Swiss-Prot
Match: U2AFL_MOUSE (U2 small nuclear ribonucleoprotein auxiliary factor 35 kDa subunit-related protein 1 OS=Mus musculus GN=Zrsr1 PE=2 SV=1) HSP 1 Score: 108.997 bits (271), Expect = 2.510e-23 Identity = 51/107 (47.66%), Postives = 68/107 (63.55%), Query Frame = 1 Query: 244 DVHTEFLKFGEIVNFKVCRNGSSHLRGNVYVHYKSLESAVLAYRSVNGRYFAGKQITCEFINVTRWKIAICGEYMKSRLKTCSRGMACNFIHCFRNPGGDYEWADWD 564 DV EF G+++ FKV N HLRGNVYV Y+S E A NGR++AG+Q+ CEF VTRWK+AICG + ++ C +G CNF+H FRNP ++ A+ D Sbjct: 233 DVLPEFKNVGKVIQFKVSCNLEPHLRGNVYVQYQSEEECQAALSLFNGRWYAGRQLQCEFCPVTRWKVAICGLF---EMQKCPKGKHCNFLHVFRNPNNEFREANRD 336
BLAST of CX295706 vs. ExPASy Swiss-Prot
Match: U2AFM_HUMAN (U2 small nuclear ribonucleoprotein auxiliary factor 35 kDa subunit-related protein 2 OS=Homo sapiens GN=ZRSR2 PE=1 SV=2) HSP 1 Score: 108.227 bits (269), Expect = 4.282e-23 Identity = 52/107 (48.60%), Postives = 68/107 (63.55%), Query Frame = 1 Query: 244 DVHTEFLKFGEIVNFKVCRNGSSHLRGNVYVHYKSLESAVLAYRSVNGRYFAGKQITCEFINVTRWKIAICGEYMKSRLKTCSRGMACNFIHCFRNPGGDYEWADWD 564 DV EF G+++ FKV N HLRGNVYV Y+S E A NGR++AG+Q+ CEF VTRWK+AICG + ++ C RG CNF+H FRNP ++ A+ D Sbjct: 242 DVLPEFKNVGKVIQFKVSCNLEPHLRGNVYVQYQSEEECQAALSLFNGRWYAGRQLQCEFCPVTRWKMAICGLF---EIQQCPRGKHCNFLHVFRNPNNEFWEANRD 345
BLAST of CX295706 vs. ExPASy Swiss-Prot
Match: U2AFL_HUMAN (U2 small nuclear ribonucleoprotein auxiliary factor 35 kDa subunit-related protein 1 OS=Homo sapiens GN=ZRSR1 PE=2 SV=2) HSP 1 Score: 108.227 bits (269), Expect = 4.282e-23 Identity = 52/107 (48.60%), Postives = 68/107 (63.55%), Query Frame = 1 Query: 244 DVHTEFLKFGEIVNFKVCRNGSSHLRGNVYVHYKSLESAVLAYRSVNGRYFAGKQITCEFINVTRWKIAICGEYMKSRLKTCSRGMACNFIHCFRNPGGDYEWADWD 564 DV EF G+++ FKV N HLRGNVYV Y+S E A NGR++AG+Q+ CEF VTRWK+AICG + ++ C RG CNF+H FRNP ++ A+ D Sbjct: 247 DVLPEFKNVGKVIQFKVSCNLEPHLRGNVYVQYQSEEECQAALSLFNGRWYAGRQLQCEFCPVTRWKMAICGLF---EIQQCPRGKHCNFLHVFRNPNNEFWEANRD 350
BLAST of CX295706 vs. ExPASy Swiss-Prot
Match: U2AFB_ORYSJ (Splicing factor U2af small subunit B OS=Oryza sativa subsp. japonica GN=U2AF35B PE=2 SV=1) HSP 1 Score: 78.5666 bits (192), Expect = 3.633e-14 Identity = 35/92 (38.04%), Postives = 59/92 (64.13%), Query Frame = 1 Query: 244 DVHTEFLKFGEIVNFKVCRNGSSHLRGNVYVHYKSLESAVLAYRSVNGRYFAGKQITCEFINVTRWKIAICGEYMKSRLKTCSRGMACNFIH 519 D++ E KFGE+ VC N + H+ GNVYV ++ E AV A+ ++ GR+++G+ I E+ VT ++ A C ++ ++ +C+RG CNF+H Sbjct: 84 DIYEELSKFGEVETLNVCDNLADHMIGNVYVQFREEEQAVAAHNALQGRFYSGRPIIVEYSPVTDFREATCRQFEEN---SCNRGGYCNFMH 172
BLAST of CX295706 vs. ExPASy Swiss-Prot
Match: U2AFA_ORYSJ (Splicing factor U2af small subunit A OS=Oryza sativa subsp. japonica GN=U2AF35A PE=2 SV=1) HSP 1 Score: 75.8702 bits (185), Expect = 2.355e-13 Identity = 35/92 (38.04%), Postives = 58/92 (63.04%), Query Frame = 1 Query: 244 DVHTEFLKFGEIVNFKVCRNGSSHLRGNVYVHYKSLESAVLAYRSVNGRYFAGKQITCEFINVTRWKIAICGEYMKSRLKTCSRGMACNFIH 519 D+ E K+GEI + VC N + H+ GNVYV ++ + A A +++ GRY++G+ I EF V+ ++ A C +Y ++ +C+RG CNF+H Sbjct: 84 DIFEELSKYGEIESLHVCDNFADHMIGNVYVQFREEDQAARALQALTGRYYSGRPIIVEFSPVSDFREATCRQYEEN---SCNRGGYCNFMH 172
BLAST of CX295706 vs. ExPASy Swiss-Prot
Match: U2AFB_ARATH (Splicing factor U2af small subunit B OS=Arabidopsis thaliana GN=U2AF35B PE=2 SV=1) HSP 1 Score: 75.485 bits (184), Expect = 3.076e-13 Identity = 35/92 (38.04%), Postives = 58/92 (63.04%), Query Frame = 1 Query: 244 DVHTEFLKFGEIVNFKVCRNGSSHLRGNVYVHYKSLESAVLAYRSVNGRYFAGKQITCEFINVTRWKIAICGEYMKSRLKTCSRGMACNFIH 519 D+ E KFGE+ + VC N + H+ GNVYV +K + A A +++ GR+++G+ I +F VT ++ A C +Y ++ +C+RG CNF+H Sbjct: 84 DIFEELNKFGEVESLNVCDNLADHMIGNVYVLFKEEDHAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEEN---SCNRGGYCNFMH 172
BLAST of CX295706 vs. ExPASy Swiss-Prot
Match: U2AFA_ARATH (Splicing factor U2af small subunit A OS=Arabidopsis thaliana GN=U2AF35A PE=1 SV=1) HSP 1 Score: 75.485 bits (184), Expect = 3.076e-13 Identity = 35/92 (38.04%), Postives = 57/92 (61.96%), Query Frame = 1 Query: 244 DVHTEFLKFGEIVNFKVCRNGSSHLRGNVYVHYKSLESAVLAYRSVNGRYFAGKQITCEFINVTRWKIAICGEYMKSRLKTCSRGMACNFIH 519 D+ E KFGEI + +C N + H+ GNVYV +K + A A +++ GR+++G+ I +F VT ++ A C +Y ++ C+RG CNF+H Sbjct: 84 DLFEELGKFGEIESLNICDNLADHMIGNVYVQFKEEDQAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEEN---NCNRGGYCNFMH 172 The following BLAST results are available for this feature:
BLAST of CX295706 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 11
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Sequences
The
following sequences are available for this feature:
EST sequence >CX295706 ID=CX295706; Name=CX295706; organism=Citrus clementina; type=EST; length=696bpback to top |