CX295741

Overview
NameCX295741
Unique NameCX295741
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length710
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig7300 contig Ccv1_Contig7300:53..762. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX295741 vs. ExPASy Swiss-Prot
Match: ISOA1_ARATH (Isoamylase 1, chloroplastic OS=Arabidopsis thaliana GN=ISA1 PE=1 SV=1)

HSP 1 Score: 202.601 bits (514), Expect = 1.724e-51
Identity = 96/141 (68.09%), Postives = 119/141 (84.40%), Query Frame = 1
Query:  268 RASKSAELETAVIEKP-PSQRFQVSKGYPTPFGATLRDGGVNFSIFSSNAVSASLCLITLSDLQENKVTEEIALDSFANKTGDVWHVFLKGDFKDMLYGYKFDGKFSPQEGHYFDPTKIVLDPYAKAVISRAQFGVLGPDE 687
            R S  AE   AV+EKP  S RF +S G P+PFG T+RD GVNFS++S+N+VSA++CLI+LSDL++NKVTEEI LD   N+TG VWHVFL+GDFKDMLYGY+FDGKFSP+EGHY+D + I+LDPYAKA+ISR +FGVLGPD+
Sbjct:   47 RRSNEAE-NIAVVEKPLKSDRFFISDGLPSPFGPTVRDDGVNFSVYSTNSVSATICLISLSDLRQNKVTEEIQLDPSRNRTGHVWHVFLRGDFKDMLYGYRFDGKFSPEEGHYYDSSNILLDPYAKAIISRDEFGVLGPDD 186          
BLAST of CX295741 vs. ExPASy Swiss-Prot
Match: ISOA3_ARATH (Isoamylase 3, chloroplastic OS=Arabidopsis thaliana GN=ISA3 PE=1 SV=2)

HSP 1 Score: 95.9005 bits (237), Expect = 2.273e-19
Identity = 54/151 (35.76%), Postives = 83/151 (54.97%), Query Frame = 1
Query:  232 KAFENVTKNLVIRASKSAELETAVIEKPPSQRFQVSKGYPTPFGATLRDGGVNFSIFSSNAVSASLCLITLSDLQENKVTE----EIALDSFANKTGDVWHVFLKG-DFKDMLYGYKFDGKFSPQEGHYFDPTKIVLDPYAKAVISRAQFG 669
            K  +  T  +  R +    +E        ++ F+VS G  +P G +  D G+NF++FS NA S +LCL +LS   ++   +    E+ LD   NKTGD WH+ ++     ++LYGY+ DG    Q+GH FD + ++LDPYAK V   + FG
Sbjct:   51 KIKDRSTLKVTCRRAHERVVEEEASTMTETKLFKVSSGEVSPLGVSQVDKGINFALFSQNATSVTLCL-SLSQSGKDDTDDDGMIELVLDPSVNKTGDTWHICVEDLPLNNVLYGYRVDGPGEWQQGHRFDRSILLLDPYAKLVKGHSSFG 200          
BLAST of CX295741 vs. ExPASy Swiss-Prot
Match: GLGX_YERE8 (Glycogen debranching enzyme OS=Yersinia enterocolitica serotype O:8 / biotype 1B (strain 8081) GN=glgX PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.379e-16
Identity = 46/123 (37.40%), Postives = 69/123 (56.10%), Query Frame = 1
Query:  334 VSKGYPTPFGATLRDGGVNFSIFSSNAVSASLCLITLSDLQENKVTEEIALDSFANKTGDVWHVFLKGDFKDMLYGYKFDGKFSPQEGHYFDPTKIVLDPYAKAVISRA------QFGVLGPD 684
            ++ G PTP GA     G+NF++FS++A    LCL       +N     I L +   ++GD+WH +L G      YGY+  G F+PQ+GH F+P K+++DPYA+A+  +       Q GV  PD
Sbjct:    4 LTSGSPTPMGAHFDGVGINFTLFSAHAEQVELCLF-----DDNNQELRIPLPA---RSGDIWHGYLPGGKPGQRYGYRVSGPFNPQQGHRFNPHKLLIDPYARALDRKVGDDPSLQGGVSQPD 118          
BLAST of CX295741 vs. ExPASy Swiss-Prot
Match: GLGX_YERPB (Glycogen debranching enzyme OS=Yersinia pseudotuberculosis serotype IB (strain PB1/+) GN=glgX PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 4.436e-15
Identity = 40/105 (38.10%), Postives = 61/105 (58.10%), Query Frame = 1
Query:  334 VSKGYPTPFGATLRDGGVNFSIFSSNAVSASLCLITLSDLQENKVTEEIALDSFANKTGDVWHVFLKGDFKDMLYGYKFDGKFSPQEGHYFDPTKIVLDPYAKAV 648
            ++ G PTP GA     G+NF++FS++A   +LCL       E     +IA+ +   +TGD+WH +L G      YGY+  G F P  GH F+P K+++DP A+A+
Sbjct:    4 LTHGSPTPSGAYFDGKGINFTLFSAHAEQVTLCLF-----DEQGQERQIAMPA---RTGDIWHGYLPGGKPGQRYGYRVSGPFDPSRGHRFNPHKLLIDPRARAL 100          
BLAST of CX295741 vs. ExPASy Swiss-Prot
Match: GLGX_YERPY (Glycogen debranching enzyme OS=Yersinia pseudotuberculosis serotype O:3 (strain YPIII) GN=glgX PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.291e-14
Identity = 39/105 (37.14%), Postives = 60/105 (57.14%), Query Frame = 1
Query:  334 VSKGYPTPFGATLRDGGVNFSIFSSNAVSASLCLITLSDLQENKVTEEIALDSFANKTGDVWHVFLKGDFKDMLYGYKFDGKFSPQEGHYFDPTKIVLDPYAKAV 648
            ++ G PTP GA     G+NF++FS++A   +LCL       E     +IA+ +   +TGD+WH +L G      YGY+  G F P  GH F+P K+++DP  +A+
Sbjct:    4 LTHGSPTPSGAYFDGKGINFTLFSAHAEQVTLCLF-----DEQGQERQIAMPA---RTGDIWHGYLPGGKPGQRYGYRVSGPFDPSRGHRFNPHKLLIDPRTRAL 100          
BLAST of CX295741 vs. ExPASy Swiss-Prot
Match: GLGX_YERPS (Glycogen debranching enzyme OS=Yersinia pseudotuberculosis GN=glgX PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.291e-14
Identity = 39/105 (37.14%), Postives = 60/105 (57.14%), Query Frame = 1
Query:  334 VSKGYPTPFGATLRDGGVNFSIFSSNAVSASLCLITLSDLQENKVTEEIALDSFANKTGDVWHVFLKGDFKDMLYGYKFDGKFSPQEGHYFDPTKIVLDPYAKAV 648
            ++ G PTP GA     G+NF++FS++A   +LCL       E     +IA+ +   +TGD+WH +L G      YGY+  G F P  GH F+P K+++DP  +A+
Sbjct:    4 LTHGSPTPSGAYFDGKGINFTLFSAHAEQVTLCLF-----DEQGQERQIAMPA---RTGDIWHGYLPGGKPGQRYGYRVSGPFDPSRGHRFNPHKLLIDPRTRAL 100          
BLAST of CX295741 vs. ExPASy Swiss-Prot
Match: GLGX_YERPP (Glycogen debranching enzyme OS=Yersinia pestis (strain Pestoides F) GN=glgX PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.291e-14
Identity = 39/105 (37.14%), Postives = 60/105 (57.14%), Query Frame = 1
Query:  334 VSKGYPTPFGATLRDGGVNFSIFSSNAVSASLCLITLSDLQENKVTEEIALDSFANKTGDVWHVFLKGDFKDMLYGYKFDGKFSPQEGHYFDPTKIVLDPYAKAV 648
            ++ G PTP GA     G+NF++FS++A   +LCL       E     +IA+ +   +TGD+WH +L G      YGY+  G F P  GH F+P K+++DP  +A+
Sbjct:    4 LTHGSPTPSGAHFDGKGINFTLFSAHAEQVTLCLF-----DEQGQERQIAMPA---RTGDIWHGYLPGGKPGQRYGYRVSGPFEPSRGHRFNPHKLLIDPRTRAL 100          
BLAST of CX295741 vs. ExPASy Swiss-Prot
Match: GLGX_YERPN (Glycogen debranching enzyme OS=Yersinia pestis bv. Antiqua (strain Nepal516) GN=glgX PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.291e-14
Identity = 39/105 (37.14%), Postives = 60/105 (57.14%), Query Frame = 1
Query:  334 VSKGYPTPFGATLRDGGVNFSIFSSNAVSASLCLITLSDLQENKVTEEIALDSFANKTGDVWHVFLKGDFKDMLYGYKFDGKFSPQEGHYFDPTKIVLDPYAKAV 648
            ++ G PTP GA     G+NF++FS++A   +LCL       E     +IA+ +   +TGD+WH +L G      YGY+  G F P  GH F+P K+++DP  +A+
Sbjct:    4 LTHGSPTPSGAHFDGKGINFTLFSAHAEQVTLCLF-----DEQGQERQIAMPA---RTGDIWHGYLPGGKPGQRYGYRVSGPFEPSRGHRFNPHKLLIDPRTRAL 100          
BLAST of CX295741 vs. ExPASy Swiss-Prot
Match: GLGX_YERPG (Glycogen debranching enzyme OS=Yersinia pestis bv. Antiqua (strain Angola) GN=glgX PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.291e-14
Identity = 39/105 (37.14%), Postives = 60/105 (57.14%), Query Frame = 1
Query:  334 VSKGYPTPFGATLRDGGVNFSIFSSNAVSASLCLITLSDLQENKVTEEIALDSFANKTGDVWHVFLKGDFKDMLYGYKFDGKFSPQEGHYFDPTKIVLDPYAKAV 648
            ++ G PTP GA     G+NF++FS++A   +LCL       E     +IA+ +   +TGD+WH +L G      YGY+  G F P  GH F+P K+++DP  +A+
Sbjct:    4 LTHGSPTPSGAHFDGKGINFTLFSAHAEQVTLCLF-----DEQGQERQIAMPA---RTGDIWHGYLPGGKPGQRYGYRVSGPFEPSRGHRFNPHKLLIDPRTRAL 100          
BLAST of CX295741 vs. ExPASy Swiss-Prot
Match: GLGX_YERPE (Glycogen debranching enzyme OS=Yersinia pestis GN=glgX PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.291e-14
Identity = 39/105 (37.14%), Postives = 60/105 (57.14%), Query Frame = 1
Query:  334 VSKGYPTPFGATLRDGGVNFSIFSSNAVSASLCLITLSDLQENKVTEEIALDSFANKTGDVWHVFLKGDFKDMLYGYKFDGKFSPQEGHYFDPTKIVLDPYAKAV 648
            ++ G PTP GA     G+NF++FS++A   +LCL       E     +IA+ +   +TGD+WH +L G      YGY+  G F P  GH F+P K+++DP  +A+
Sbjct:    4 LTHGSPTPSGAHFDGKGINFTLFSAHAEQVTLCLF-----DEQGQERQIAMPA---RTGDIWHGYLPGGKPGQRYGYRVSGPFEPSRGHRFNPHKLLIDPRTRAL 100          
The following BLAST results are available for this feature:
BLAST of CX295741 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 66
Match NameE-valueIdentityDescription
ISOA1_ARATH1.724e-5168.09Isoamylase 1, chloroplastic OS=Arabidopsis thalian... [more]
ISOA3_ARATH2.273e-1935.76Isoamylase 3, chloroplastic OS=Arabidopsis thalian... [more]
GLGX_YERE81.379e-1637.40Glycogen debranching enzyme OS=Yersinia enterocoli... [more]
GLGX_YERPB4.436e-1538.10Glycogen debranching enzyme OS=Yersinia pseudotube... [more]
GLGX_YERPY1.291e-1437.14Glycogen debranching enzyme OS=Yersinia pseudotube... [more]
GLGX_YERPS1.291e-1437.14Glycogen debranching enzyme OS=Yersinia pseudotube... [more]
GLGX_YERPP1.291e-1437.14Glycogen debranching enzyme OS=Yersinia pestis (st... [more]
GLGX_YERPN1.291e-1437.14Glycogen debranching enzyme OS=Yersinia pestis bv.... [more]
GLGX_YERPG1.291e-1437.14Glycogen debranching enzyme OS=Yersinia pestis bv.... [more]
GLGX_YERPE1.291e-1437.14Glycogen debranching enzyme OS=Yersinia pestis GN=... [more]

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Properties
Property NameValue
Genbank descriptionC05075D07SK DroRLeaf1 Citrus clementina cDNA clone C05075D07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295741 ID=CX295741; Name=CX295741; organism=Citrus clementina; type=EST; length=710bp
GAGGCCTGCTATCATGCTAGCTGTCGTCAATCATCATGAACTTTTAATTG
ATTTGTTCAAAGCTAAATGGAGTTGCTTCAATTCACTTCATCACCATTAC
TACACGGTTCTTCTAATTTCATCAACTCTCCAGAATTCTACAAGAGTAAG
CTGAGTAATTTGAAGAAGCCGCCAACGACGACGTTTCGATGTTGCAATCA
TCCGAATAAGACTAGTCATTTTGCAAATTCAAAAGCGTTTGAGAATGTGA
CTAAGAATTTGGTGATCAGAGCGAGCAAAAGTGCTGAGTTGGAGACTGCG
GTTATCGAGAAGCCTCCATCGCAGCGGTTTCAGGTTTCTAAAGGCTATCC
GACGCCGTTTGGCGCTACTCTTCGCGACGGCGGTGTCAATTTCTCTATCT
TCTCCAGCAATGCGGTTTCCGCTAGTCTTTGCTTGATTACTCTCTCGGAT
TTGCAAGAGAATAAGGTCACTGAAGAGATTGCTCTTGATTCTTTCGCTAA
TAAAACTGGAGATGTGTGGCATGTATTTCTCAAAGGAGACTTCAAAGATA
TGTTATATGGCTACAAATTCGACGGAAAGTTTTCTCCCCAAGAAGGACAT
TACTTTGACCCTACGAAGATAGTTCTGGATCCGTATGCAAAAGCAGTGAT
AAGCAGAGCACAATTTGGCGTTTTAGGGCCTGATGAAATTGCTGGCCTCA
ATGGCCTGCT
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