CX295779

Overview
NameCX295779
Unique NameCX295779
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length733
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig670 contig Ccv1_Contig670:1..733. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of CX295779 vs. ExPASy Swiss-Prot
Match: YAN9_SCHPO (Putative amino acid permease C3H1.09c OS=Schizosaccharomyces pombe GN=SPAC3H1.09c PE=1 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.832e-12
Identity = 53/171 (30.99%), Postives = 82/171 (47.95%), Query Frame = 1 
Query:  172 EENMGFDEEAGSSSYTLP--VPP------YPREDTPLLTK-------SKPLSTRSKTFANVFISIVGAGVLGLPYTFKKTGWIMGLLMLFSVAALTYYCMMLLVHTRRKLETIHGFSKINSFGDLGYTVCGSVGRVAVDAMIVLAQAGFCVSYLIFIANTLTHMINNSTTS 639
            EE    DE+  +  + +P  V P       P E  PL+++       +   ++  K    +  S VG GVL LP  FK  G +     L  V  L++ C +LL+ TR K+          SFGD+G T+ G   R A+ A IV++Q GF  +Y+ F+A+TL   +   +T+
Sbjct:  224 EELSEEDEDEDTDDFAMPRDVNPSLIHSTVPSEQEPLISRHGRYKLQTPGNASNGKAVLLLLKSFVGTGVLFLPKAFKLGGLVFSSATLLIVGVLSHICFLLLIQTRMKVP--------GSFGDIGGTLYGPHMRFAILASIVVSQIGFSSAYISFVASTLQACVKVISTT 386
The following BLAST results are available for this feature:
BLAST of CX295779 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
YAN9_SCHPO4.832e-1230.99Putative amino acid permease C3H1.09c OS=Schizosac... [more]
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Properties
Property NameValue
Genbank descriptionC05075G10SK DroRLeaf1 Citrus clementina cDNA clone C05075G10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295779 ID=CX295779; Name=CX295779; organism=Citrus clementina; type=EST; length=733bp
GGATTTTCCTTCTTCATCTCTTATCTCACGAAAAGGTCATTTTTTCTCCT
ACAACTTACCTGAAAAGTGCTTAATATACCCAACCCATTTGATCACCTGA
ATCATTTCATTAGCCCCATCTAATTCTTCTGATACGTGATTTCAATTCTC
AAACACAACAAACACAATAAGGAAGAAAACATGGGATTTGATGAAGAAGC
AGGCTCATCTTCATACACACTGCCAGTGCCACCTTACCCAAGAGAAGACA
CCCCACTTCTAACCAAATCGAAGCCTCTCTCTACACGATCCAAGACCTTT
GCTAATGTCTTCATATCCATAGTTGGTGCGGGGGTATTAGGCCTGCCTTA
CACCTTTAAGAAAACTGGATGGATCATGGGCTTACTTATGCTCTTCTCTG
TTGCAGCCTTGACTTACTACTGCATGATGCTTTTGGTTCACACTCGTCGC
AAGCTTGAAACCATTCATGGCTTCTCAAAAATCAATTCTTTTGGCGATCT
TGGCTATACCGTTTGTGGTTCAGTTGGTCGTGTAGCTGTCGATGCTATGA
TAGTCCTTGCGCAAGCTGGTTTCTGTGTTAGTTATCTAATCTTCATTGCC
AATACTTTAACTCATATGATTAATAATAGCACTACTTCACAAACTATTCT
TGGCTTTTTGTCACCTAAGGCTCTGTATATTTGGGGGTGTTTCCCTTTCC
ACTAGGGTTAAATTCATTCCACTTTGACTCATT
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