CX295823

Overview
NameCX295823
Unique NameCX295823
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length750
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CX295823 vs. ExPASy Swiss-Prot
Match: Y5175_ARATH (UPF0706 protein At5g01750 OS=Arabidopsis thaliana GN=At5g01750 PE=1 SV=1)

HSP 1 Score: 253.832 bits (647), Expect = 7.181e-67
Identity = 114/184 (61.96%), Postives = 151/184 (82.07%), Query Frame = 1 
Query:  157 VIGPQYCLPYPVDLSIVRKFLTLTDGSFAVTDINDNLMFKVKEKLISLHDKRTLLDPAGNPIVTITEKVFSLHEKHFVFRGASTDTKDLLFTVERSSVIQLKTTLNVYLASNTKQDVCDFKIKGSWTEKSCVVYAGESNTIVAQMHKKTTAGSVLLNKDRFTVTVYPNIDYAFIVALIVILDDI 708
            V+ P+YC PYP+D++IVRK ++LTDG+F +TD+N NL+FKVKE +  LHDKR LLD +G P+VT+ EK+ S+H++  VFRG STD +DLL+TV+RSS++QLKT L+V+L  N  +  CDF++KGSW E+SCVVYAGES+ IVAQMH+K T  SV L KD F+VTVYPN+DYAFI +L+VILDD+
Sbjct:   27 VVDPKYCAPYPIDMAIVRKMMSLTDGNFVITDVNGNLLFKVKEPVFGLHDKRVLLDGSGTPVVTLREKMVSMHDRWQVFRGGSTDQRDLLYTVKRSSMLQLKTKLDVFLGHNKDEKRCDFRVKGSWLERSCVVYAGESDAIVAQMHRKHTVQSVFLGKDNFSVTVYPNVDYAFIASLVVILDDV 210
The following BLAST results are available for this feature:
BLAST of CX295823 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
Y5175_ARATH7.181e-6761.96UPF0706 protein At5g01750 OS=Arabidopsis thaliana ... [more]
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Properties
Property NameValue
Genbank descriptionC05076C06SK DroRLeaf1 Citrus clementina cDNA clone C05076C06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295823 ID=CX295823; Name=CX295823; organism=Citrus clementina; type=EST; length=750bp
GAGGGCAAAGGCTCGTATCATATCATGGAGCAACCAATTACACAACACAC
TGCAGACCAGATGCCACAGCAACCAAACCCACAGCAAATTCCACAGCAGC
CAATTAATATTCCAGCGCCAACTCCAGCACCAACAATATATTCCAATCCG
GTTTCGGTAATCGGCCCTCAGTATTGCCTTCCTTATCCCGTTGATCTATC
CATCGTTAGAAAGTTTTTAACCCTCACCGATGGCAGTTTTGCTGTCACTG
ATATCAATGACAATCTCATGTTCAAAGTGAAAGAAAAACTTATAAGCCTC
CATGACAAGCGGACTCTACTTGATCCTGCTGGCAACCCTATTGTCACCAT
AACAGAGAAAGTTTTTTCCTTGCACGAGAAGCATTTTGTATTCAGGGGGG
CTAGCACAGACACTAAAGATCTTCTCTTTACTGTGGAAAGATCTTCAGTG
ATCCAATTGAAGACCACTTTGAACGTCTACCTGGCAAGTAACACCAAACA
AGATGTTTGCGATTTCAAGATCAAAGGCAGCTGGACTGAAAAATCTTGTG
TTGTATATGCTGGAGAGTCAAACACAATTGTTGCCCAGATGCACAAAAAG
ACAACTGCGGGCAGTGTCTTGCTCAACAAGGACAGGTTCACTGTGACAGT
TTATCCGAACATAGACTATGCGTTTATAGTAGCCCTGATCGTGATCCTCG
ATGATATCACGGTGATGATGATACGAGTGAGATATTTAGATTTGAATTGC
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