CX295839

Overview
NameCX295839
Unique NameCX295839
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length703
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX295839 vs. ExPASy Swiss-Prot
Match: FBW2_ARATH (F-box protein FBW2 OS=Arabidopsis thaliana GN=FBW2 PE=1 SV=1)

HSP 1 Score: 329.717 bits (844), Expect = 9.201e-90
Identity = 162/228 (71.05%), Postives = 190/228 (83.33%), Query Frame = 1
Query:   22 MEGESEFRHWDELIPDALGLIFRNLSLQEVLTVIPGVCKSWRRAVIGPYCWQEIDIEEWSNRC-QPDHLDRMVEMLITRSSGSLRKLCVSGLHNDMMFSLIAENAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDVK 702
            ME + EFRHWDELIPDALGLIF +L LQEVLTV+P VCK+W RAV GPYCWQEIDIE WSNR  Q DHLDRM+EMLI RS+GSLRKL V+GL ND +FS IA++AGSL+TL++PRS +++S V  +A +LS++TFLDLSYC KIG  A++AIGKHCK L   CRNMHPLD A  +S DDEA AIA+TMPKLKRLE+AYH +STE VLKILS C  LEFL+LRGCWDV+
Sbjct:    1 MEEDCEFRHWDELIPDALGLIFSHLPLQEVLTVVPRVCKAWNRAVTGPYCWQEIDIELWSNRFHQSDHLDRMLEMLIPRSAGSLRKLSVTGLRNDSIFSFIAQHAGSLKTLKVPRSGLTNSGVVNVAEKLSSLTFLDLSYCCKIGPEAIQAIGKHCKSLREFCRNMHPLDVASVVSHDDEAYAIANTMPKLKRLEIAYHRVSTEGVLKILSCCVFLEFLELRGCWDVQ 228          
BLAST of CX295839 vs. ExPASy Swiss-Prot
Match: SKI19_ARATH (F-box protein SKIP19 OS=Arabidopsis thaliana GN=SKIP19 PE=1 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 3.686e-22
Identity = 73/223 (32.74%), Postives = 115/223 (51.57%), Query Frame = 1
Query:   37 EFRHWDELIPDALGLIFRNLSLQEVLTVIPGVCKSWRRAVIGPYCWQEIDIEEWSNRCQPDH-LDRMVEMLITRSSGSLRKLCVSGLHNDMMFSLIAENAGSLQTLRLPR-SEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDV 699
            E  +W EL P+    I   L   E+L     VC+SWRR    P  W++ID+    +    D+ L+ M    + RS G L  + +       + + IA  + +L++LRL R S+++D    +   +L  +  L+LSYCS     +L  +G+ C  +  L  N HP     +   DD+A AIA TMPKL+ L++  + +S   +  IL +C+ LE LDLR C++V
Sbjct:   15 ESTNWTELPPELTSAILHRLGAIEILENAQKVCRSWRRVCKDPSMWRKIDMHNLGDLDDMDYNLEIMCRHAVDRSQGGLVDIGIWYFGTVDLLNYIAHRSSNLRSLRLIRCSQITDDGFVEAVVKLP-LEELELSYCS-FSVESLRVVGQCCLNMKTLKLNKHP-----QKENDDDALAIAETMPKLRHLQLCGNGLSDTGLNAILDNCSNLEHLDLRRCFNV 230          
BLAST of CX295839 vs. ExPASy Swiss-Prot
Match: FBL23_ARATH (Putative F-box/LRR-repeat protein 23 OS=Arabidopsis thaliana GN=FBL23 PE=2 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 3.450e-20
Identity = 67/225 (29.78%), Postives = 113/225 (50.22%), Query Frame = 1
Query:   31 ESEFRHWDELIPDALGLIFRNLSLQEVLTVIPGVCKSWRRAVIGPYCWQEIDIEEWSNRCQPDH-LDRMVEMLITRSSGSLRKLCVSGLHNDMMFSLIAENAGSLQTLRLPRS-EMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDV 699
            + + R+W EL       I   L   E+L     VCK W R    P  W++IDI+  ++R    + L+ M    + RS G L ++ +     + +   IA+ + +L++L L R   ++D  VA+   ++  + +L++SYC   G  +L  IG+ C  L  L  N  P         DD A AIA +MP+L+ L++  + ++ + +  IL  C  LE LDLR C+++
Sbjct:  175 DKKLRNWAELPSKLTSSILLRLGAIEILQNAQKVCKPWHRVCKDPSMWRKIDIDNRNDRAAFKYDLESMCRHAVDRSHGGLIEIEIWYYGTNDLIMYIADRSSNLKSLGLVRCFPITDEGVAKAVSKVPLLEYLEVSYCLFSGE-SLRDIGRSCPNLKTLKLNRAPEIMFSNSGFDDNAKAIAESMPELRHLQLLGNGLTNKGLNAILDGCPHLEHLDLRQCFNI 398          
BLAST of CX295839 vs. ExPASy Swiss-Prot
Match: SKIP1_ARATH (F-box protein SKIP1 OS=Arabidopsis thaliana GN=SKIP1 PE=1 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.004e-19
Identity = 76/243 (31.28%), Postives = 114/243 (46.91%), Query Frame = 1
Query:   31 ESEFRHWDELIPDALGLIFRNLSLQEVLTVIPGVCKSWRRAVIGPYCWQEIDIEEW-SNRCQPDHL---------DRMVEMLITRSSGSLRKLCVSGLHNDMMFSLIAENAGSLQTLRLPRS-EMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMH----------PLDTADKLSQ--DDEANAIASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGC 690
            E +   W  L P+ L  I   L++QE+ T    V KSW      PY W   D+E W  +  +  HL         D M+  ++  S G L K+ V    +D   S  A+   +LQ L +  S  ++D+ + +IA R  ++  LD+SYC +I    L  IG++C  L +L RN+           P +  D   Q  D EA+AI   M  L+ LE+ +  +S + +  I   C  LE+LDL GC
Sbjct:    2 EEDGSDWGGLAPEILINIISRLTIQELWTGPMFVQKSWLTVCRDPYLWSIFDLEPWFDSYPESTHLWSPEFEQKVDLMLRSVVDWSEGGLTKIRVRHC-SDHALSYAADRCPNLQVLAIRSSPNVTDASMTKIAFRCRSLKELDISYCHEISHDTLVMIGRNCPNLRILKRNLMDWSSRHIGSVPTEYLDACPQDGDTEADAIGKHMINLEHLEIQFSRLSVKGLASICEGCPKLEYLDLFGC 243          
BLAST of CX295839 vs. ExPASy Swiss-Prot
Match: FBL9_ARATH (Putative F-box/LRR-repeat protein 9 OS=Arabidopsis thaliana GN=FBL9 PE=4 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.093e-17
Identity = 70/226 (30.97%), Postives = 106/226 (46.90%), Query Frame = 1
Query:   37 EFRHWDELIPDALGLIFRNLSLQEVLTVIPGVCKSWRRAVIGPYCWQEIDIEEWSNRCQPDHLDRMVEMLITR----SSGSLRKLCVSGLHNDMMFSLIAENAGSLQTLR-LPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDV 699
            E+R+W EL P+    I   L   E+L     VCKSWRR    P  W++IDI    N      L  ++E L  R    S G L ++ +  L N    + IA+ + +L+ L  +  + +    V + A +L  +  LD++Y S I    L+ +G+ C  L  L  N     T D    D  A AIA TMP L+ L++  + +S   +  IL  C  L+ L L  C ++
Sbjct:   17 EYRNWAELPPELTSSILLRLGAIEILQNAQRVCKSWRRVCQDPSMWRKIDIRIKENLVNSVELFYVIEPLCCRAVDLSQGGLLEINIDYLVNTSFLNYIADRSSNLRRLGVVDCAPVLSRGVVEAAMKLPLLEELDITYKSSIREQELKVVGQSCPNLRTLKLNC----TGDVKCCDKVALAIAETMPGLRHLQLFRNGLSETGLNAILEGCPHLKNLGLHQCLNI 238          
BLAST of CX295839 vs. ExPASy Swiss-Prot
Match: FBL22_ARATH (Putative F-box/LRR-repeat protein 22 OS=Arabidopsis thaliana GN=FBL22 PE=2 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 5.155e-16
Identity = 65/232 (28.02%), Postives = 108/232 (46.55%), Query Frame = 1
Query:   22 MEGESEFRHWDELIPDALGLIFRNLSLQEVLTVIPGVCKSWRRAVIGPYCWQEIDIEEWSNRCQPDHLDRMVEMLITRSSGSLRKLCVS--GLHNDMMFSLIAENAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLS----QDDEANAIASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDV 699
            M+GE +  +W EL PD L  I   LS  E+L     VC+SWRR    P  W+ ID+           ++     ++  S G L +  +         + + +AE + +L+ LR+   +++   + +   +L  +  L+L YCS      +E   +H K +   C N+  L      S     D++A AIA TMP L  L++  + ++   +  IL  C  LE LDLR C+++
Sbjct:   18 MKGEEKPSNWAELPPDLLSSILLRLSPLEILENARKVCRSWRRVSKDPLIWRRIDMRNLRRLYCIYAMEACCRHVVDLSQGGLLEFNIDQWRFQTTSLLNYMAERSSNLRRLRVKGGQITSVGIFEAIVKLPLLEELELLYCS------IEE--EHFKTIGQACPNLKTLKLVGFWSHLNESDNDALAIADTMPGLLHLQLISNGLTNIGLNAILDGCPHLECLDLRQCFNI 241          
BLAST of CX295839 vs. ExPASy Swiss-Prot
Match: FB221_ARATH (Putative F-box protein At4g05480 OS=Arabidopsis thaliana GN=At4g05480 PE=4 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.516e-12
Identity = 67/246 (27.24%), Postives = 119/246 (48.37%), Query Frame = 1
Query:    4 YLKVD*MEGESEFRHWDELIPDALGLIFRNLSLQEVLTVIPGVCKSWRRAVIGPYCWQEIDIEEWSNRCQPDHLD--RMVEMLITRSSGSLRKLCVSGLHNDMMFSLIAENAGSLQTLRLPRSE-MSDSIVAQIAGRLSAVTFLDLSYCS-KIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQ---------DDEANAIASTMPKLKRLEMAYHVISTEIVLKILSSCA-LLEFLDLRGCWDV 699
            +LK D    + E  +W +L P+    I   LS+ ++L     +C++WRR    P  W++I++ +    C     D   M   ++  S G L ++ +    +D + S I + + +L++L +   E M++  V     +L  +  L + + S K+    L+AIG  C  L  L  N    + A  +SQ         DD+A AIA +MPKL+ L++  + ++   +  IL  C  L E LD+R C+++
Sbjct:   29 FLKKD----DEERINWVDLPPELTTSILLRLSVTDILDNARKLCRAWRRICKDPSMWRKINLRD----CLMYEFDFESMCRHIVDLSQGGLLEINIEHFVSDSLLSYIVDRSCNLKSLGISIYEPMTNKGVMNGIEKLPLLETLVIFHSSIKLD---LKAIGHACPQLKTLKLNSLGSELAHDISQVGYIPLLECDDDALAIAESMPKLRHLQLMGNGLTNTGLNAILDGCPHLEEHLDVRKCFNI 263          
BLAST of CX295839 vs. ExPASy Swiss-Prot
Match: FBL21_ARATH (Putative F-box/LRR-repeat protein 21 OS=Arabidopsis thaliana GN=FBL21 PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 7.703e-12
Identity = 65/238 (27.31%), Postives = 106/238 (44.54%), Query Frame = 1
Query:   37 EFRHWDELIPDALGLIFRNLSLQEVLTVIPGVCKSWRRAVIGPYCWQEIDIEEWSNRCQPDHLD--RMVEMLITRSSGSLRKLCVSG-LHNDMMFSLIAENAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSY-CSKIGAPALEAIGKHCKLLVVLCRNM-------------HPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDV 699
            E R+W +L P+    I   LSL ++L     VCK WRR    P  W++I+  +    C   + D   M   ++  S G L ++ V     +D + S I +       L +    ++   V     ++  +  L++++ C K+    L+AIG  C  L  L  N              + LD    L  DD+A AIA +MPKL  L++  + ++   +  IL  C  LE LD+R C+ +
Sbjct:   42 ERRNWVDLPPELTTSILLRLSLTDILDNAQKVCKEWRRICKDPSMWRKINTRD----CLMYNFDFVSMCRHIVDLSQGGLLEINVDEHFLSDSLLSYITDRNLRSLGLGMCFPRVTKLGVVNAIAKIPLLETLEVTHSCIKLD---LKAIGHACPQLKTLKLNSLGRLWPASDKYDSNVLDDMGPLECDDDALAIAESMPKLHHLQLMANRLTNTGLNAILDGCPHLEHLDVRKCFRI 272          
BLAST of CX295839 vs. ExPASy Swiss-Prot
Match: FBL19_ARATH (Putative F-box/LRR-repeat protein 19 OS=Arabidopsis thaliana GN=FBL19 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.241e-11
Identity = 63/246 (25.61%), Postives = 105/246 (42.68%), Query Frame = 1
Query:   28 GESEFRHWDELIPDALGLIFRNLSLQEVLTVIPGVCKSWRRAVIGPYCWQEIDIE----------EWSNRCQPDHLDRMVEMLITRSSGSLRKLCVSGLHNDMMFSLIAENAGSLQTLRLPRS-EMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHP---------LDTADKLSQ-----DDEANAIASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGC 690
            G   +  W EL  + L  IF  LS ++       V K+W  A   P      D+E           W      D +D  +  ++ RS G L ++ +     +   S  AE   +L+ L +     ++D+ + +IA     +  LD+SY   I   +L  +G+ C+ L +L RN+ P         +   D L+      + EA  I   M +LK LE+ Y  ++   +  +   C+ LE++DLRGC
Sbjct:   13 GSGLYPDWSELTRECLLDIFSRLSQEQRWIGPMLVSKNWMNACYDPTLNTIFDLETRFLSFPESINWWTPEFEDKVDSFLRSVVDRSEGGLTEIRIRHC-TERSLSYAAERCPNLEVLWIKNCPNVTDASMEKIAMNCPNLRELDISYSYGITHESLITLGRSCQNLKILKRNLLPRLGPSLPTIVAPLDYLATFPRYGNIEARIIGKYMTQLKHLEIRYSTLTARGLDSVCKGCSNLEYMDLRGC 257          
The following BLAST results are available for this feature:
BLAST of CX295839 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 9
Match NameE-valueIdentityDescription
FBW2_ARATH9.201e-9071.05F-box protein FBW2 OS=Arabidopsis thaliana GN=FBW2... [more]
SKI19_ARATH3.686e-2232.74F-box protein SKIP19 OS=Arabidopsis thaliana GN=SK... [more]
FBL23_ARATH3.450e-2029.78Putative F-box/LRR-repeat protein 23 OS=Arabidopsi... [more]
SKIP1_ARATH1.004e-1931.28F-box protein SKIP1 OS=Arabidopsis thaliana GN=SKI... [more]
FBL9_ARATH2.093e-1730.97Putative F-box/LRR-repeat protein 9 OS=Arabidopsis... [more]
FBL22_ARATH5.155e-1628.02Putative F-box/LRR-repeat protein 22 OS=Arabidopsi... [more]
FB221_ARATH4.516e-1227.24Putative F-box protein At4g05480 OS=Arabidopsis th... [more]
FBL21_ARATH7.703e-1227.31Putative F-box/LRR-repeat protein 21 OS=Arabidopsi... [more]
FBL19_ARATH2.241e-1125.61Putative F-box/LRR-repeat protein 19 OS=Arabidopsi... [more]
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Properties
Property NameValue
Genbank descriptionC05076D10SK DroRLeaf1 Citrus clementina cDNA clone C05076D10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295839 ID=CX295839; Name=CX295839; organism=Citrus clementina; type=EST; length=703bp
CCGTACCTTAAGGTAGATTAAATGGAAGGAGAAAGTGAGTTTAGGCATTG
GGATGAACTAATACCTGATGCTCTTGGGCTGATCTTTAGAAATCTGTCAC
TCCAGGAGGTATTAACCGTGATACCAGGGGTTTGCAAATCATGGCGTAGA
GCAGTAATTGGACCATATTGCTGGCAAGAGATTGACATTGAGGAATGGAG
TAATCGGTGCCAACCGGACCACCTCGATCGGATGGTTGAAATGTTGATCA
CAAGAAGTTCTGGATCTCTCCGCAAGCTCTGTGTTTCTGGCCTGCACAAT
GATATGATGTTTTCCTTGATTGCAGAAAATGCTGGTTCCCTTCAGACATT
GCGACTTCCAAGAAGTGAAATGAGTGACTCCATAGTGGCTCAGATAGCTG
GAAGGTTGTCTGCGGTCACTTTCTTGGATTTGAGCTATTGCAGTAAAATT
GGTGCTCCTGCTTTGGAGGCCATAGGAAAACACTGTAAATTGCTTGTGGT
TCTATGCCGAAACATGCACCCATTAGATACAGCTGACAAGCTCTCACAAG
ATGACGAGGCCAATGCCATTGCCTCAACGATGCCAAAACTTAAGCGACTT
GAGATGGCTTACCATGTTATCAGCACAGAAATTGTTCTTAAGATCCTTTC
GAGCTGTGCCCTGCTAGAGTTTTTGGATTTGAGAGGGTGCTGGGATGTGA
AAC
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