CX295872

Overview
NameCX295872
Unique NameCX295872
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length709
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX295872_ssr233 microsatellite CX295872_ssr233:233..244. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of CX295872 vs. ExPASy Swiss-Prot
Match: SCP44_ARATH (Serine carboxypeptidase-like 44 OS=Arabidopsis thaliana GN=SCPL44 PE=2 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 2.779e-17
Identity = 39/50 (78.00%), Postives = 44/50 (88.00%), Query Frame = 1
Query:  280 FPAEDLVVSLPGQPKVAFRQYAGYVDVDVKNGRSLFYYFVEAEVEPHEKP 429
            FP +DLV  LPGQP+VAFRQ+AGYVD+DVK GRSLFYYFVEAE +PH KP
Sbjct:   32 FPVQDLVTKLPGQPEVAFRQFAGYVDIDVKAGRSLFYYFVEAEKQPHSKP 81          
BLAST of CX295872 vs. ExPASy Swiss-Prot
Match: SCP42_ARATH (Serine carboxypeptidase-like 42 OS=Arabidopsis thaliana GN=SCPL42 PE=2 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 7.567e-15
Identity = 37/50 (74.00%), Postives = 41/50 (82.00%), Query Frame = 1
Query:  280 FPAEDLVVSLPGQPKVAFRQYAGYVDVDVKNGRSLFYYFVEAEVEPHEKP 429
            +P EDLVV LPGQP V F+QYAGYVDVDVK GRSLFYY+VEA  +P  KP
Sbjct:   27 YPEEDLVVRLPGQPTVGFKQYAGYVDVDVKAGRSLFYYYVEAVKQPDSKP 76          
BLAST of CX295872 vs. ExPASy Swiss-Prot
Match: SCP41_ARATH (Serine carboxypeptidase-like 41 OS=Arabidopsis thaliana GN=SCPL41 PE=2 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 9.883e-15
Identity = 37/50 (74.00%), Postives = 40/50 (80.00%), Query Frame = 1
Query:  280 FPAEDLVVSLPGQPKVAFRQYAGYVDVDVKNGRSLFYYFVEAEVEPHEKP 429
            +P  DLVV LPGQPKV FRQYAGYVD+D+  GRSLFYYFVEAE  P  KP
Sbjct:   23 YPETDLVVRLPGQPKVVFRQYAGYVDLDLNAGRSLFYYFVEAEKHPDTKP 72          
BLAST of CX295872 vs. ExPASy Swiss-Prot
Match: SCP43_ARATH (Serine carboxypeptidase-like 43 OS=Arabidopsis thaliana GN=SCPL43 PE=2 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.202e-14
Identity = 36/50 (72.00%), Postives = 40/50 (80.00%), Query Frame = 1
Query:  280 FPAEDLVVSLPGQPKVAFRQYAGYVDVDVKNGRSLFYYFVEAEVEPHEKP 429
            +P EDLV  LPGQP V FRQ+AGYVDVD +NGRSLFYY+VEA  EP  KP
Sbjct:   26 YPEEDLVARLPGQPNVGFRQFAGYVDVDSENGRSLFYYYVEAVKEPDTKP 75          
The following BLAST results are available for this feature:
BLAST of CX295872 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
SCP44_ARATH2.779e-1778.00Serine carboxypeptidase-like 44 OS=Arabidopsis tha... [more]
SCP42_ARATH7.567e-1574.00Serine carboxypeptidase-like 42 OS=Arabidopsis tha... [more]
SCP41_ARATH9.883e-1574.00Serine carboxypeptidase-like 41 OS=Arabidopsis tha... [more]
SCP43_ARATH2.202e-1472.00Serine carboxypeptidase-like 43 OS=Arabidopsis tha... [more]
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Properties
Property NameValue
Genbank descriptionC05076G07SK DroRLeaf1 Citrus clementina cDNA clone C05076G07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295872 ID=CX295872; Name=CX295872; organism=Citrus clementina; type=EST; length=709bp
AGAATTCACGTGACTGGTGTAACAGAATTTGTTTGATAAAGATATACAAG
GGAATTATTATCATCCATGATTTTTAATATATATAGCTCTTTATAGGTTG
CTTTTGGTTTCATTATCATTATATATTTGAACGTGCAATTCCATCTAAAT
GAATGTACATGTGAGCTTCCCGTGACAAATCTTAAGATGGGTAGGTGGTG
TTTTGGTGGGTTCTTAAATATTTCTTTAGTGGTGTTGTTGTTGTTGGTGA
GTAGAAGTAATGTTGTATACGTGGCGGCGTTCCCGGCGGAGGATCTGGTG
GTGAGCTTGCCGGGGCAACCGAAGGTTGCCTTCAGGCAATATGCTGGCTA
TGTTGATGTTGATGTCAAAAATGGCAGAAGCTTGTTTTACTACTTTGTTG
AAGCTGAAGTCGAACCTCATGAGAAACCTCTCACTCTTTGGCTTAATGGA
GGTTTTCTCTTTCTTTTTTTTTTTCAATTTGTTTTAATGCTTTTTTTTTT
CTGGCTCAGTCAGTTGAATCTAGTGATAATTTGTTGTAAATCTAGAATAG
CAATATAGTTGTAACTGTTGTCCTAAAGTGGTACAACTTTTACTCGACGG
ATACTTGACAGCTGATGATTCCACATCCAAGTTTCTTTTGTCTCTCAATT
TGAGTTTCTTGTTCTGTGTTATGTGCTTTTTCATGTGATTCTGATATGAC
GGGATTCTG
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