CX295879

Overview
NameCX295879
Unique NameCX295879
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length597
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX295879 vs. ExPASy Swiss-Prot
Match: DPS1_DICDI (Decaprenyl-diphosphate synthase OS=Dictyostelium discoideum GN=coq1 PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 2.005e-17
Identity = 45/122 (36.89%), Postives = 75/122 (61.48%), Query Frame = 1
Query:    4 GLAYQLIDDVLDFTGTSASLGKGSLSDIRHGIITAPILFAMEEFPQLRTVVEQGFEDSSNVDIALEYLGKSRGIQKTRELXXXXXXXXXXXIDSLPENNDEDVTKSRRALLDLTHRVITRNK 369
            GLA+Q++DD+LD+TG++   GK +  D+  G+ TAP+L+A +EFPQL  ++++ F +  +V+ A   +  S+GI+KTR L           +  LP+      ++SR  L+ L+H V+TR K
Sbjct:  341 GLAFQIVDDLLDYTGSAEECGKATSVDLTLGLATAPVLYATQEFPQLEKLIKRKFSEIGDVEEAKRLVALSKGIEKTRNLAIEYCNRAIQSLLKLPQ------SESRDLLITLSHIVVTRTK 456          
BLAST of CX295879 vs. ExPASy Swiss-Prot
Match: DPS1_MOUSE (Decaprenyl-diphosphate synthase subunit 1 OS=Mus musculus GN=Pdss1 PE=1 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.100e-15
Identity = 45/122 (36.89%), Postives = 72/122 (59.02%), Query Frame = 1
Query:    4 GLAYQLIDDVLDFTGTSASLGKGSLSDIRHGIITAPILFAMEEFPQLRTVVEQGFEDSSNVDIALEYLGKSRGIQKTRELXXXXXXXXXXXIDSLPENNDEDVTKSRRALLDLTHRVITRNK 369
            G+A+QLIDDVLDFT  S  +GK + +D++ GI T P+LFA ++FP++  ++ + F    +VD A +Y+ +S G+Q+T  L           I  L  + + D      AL+ L+  V+TR+K
Sbjct:  294 GIAFQLIDDVLDFTSCSDQMGKPTSADLKLGIATGPVLFACQQFPEMNAMIMRRFSLPGDVDRARQYVLQSDGVQQTTYLAQQYCHKAVREIRKLRPSTERD------ALIQLSESVLTRDK 409          
BLAST of CX295879 vs. ExPASy Swiss-Prot
Match: PREA_CYAPA (Prenyl transferase OS=Cyanophora paradoxa GN=preA PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 1.876e-15
Identity = 36/105 (34.29%), Postives = 69/105 (65.71%), Query Frame = 1
Query:    4 GLAYQLIDDVLDFTGTSASLGKGSLSDIRHGIITAPILFAMEEFPQLRTVVEQGFEDSSNVDIALEYLGKSRGIQKTRELXXXXXXXXXXXIDSLPENNDEDVTK 318
            GLA+Q++DD+LDFT ++  LGK S SD++ G +TAP+LFA+E+  +L  ++++ F +  + +  L+ + +++ I+KTREL           +++LP ++ ++  K
Sbjct:  208 GLAFQIVDDILDFTSSTEELGKPSCSDLKKGNLTAPVLFALEQNSELIPLIQRQFSEPKDFEYTLQIVEETKAIEKTRELAMEHAQVAIQCLENLPPSSSKEALK 312          
BLAST of CX295879 vs. ExPASy Swiss-Prot
Match: DPS1_HUMAN (Decaprenyl-diphosphate synthase subunit 1 OS=Homo sapiens GN=PDSS1 PE=1 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 3.200e-15
Identity = 44/122 (36.07%), Postives = 72/122 (59.02%), Query Frame = 1
Query:    4 GLAYQLIDDVLDFTGTSASLGKGSLSDIRHGIITAPILFAMEEFPQLRTVVEQGFEDSSNVDIALEYLGKSRGIQKTRELXXXXXXXXXXXIDSLPENNDEDVTKSRRALLDLTHRVITRNK 369
            G+A+QLIDDVLDFT  S  +GK + +D++ G+ T P+LFA ++FP++  ++ + F    +VD A +Y+ +S G+Q+T  L           I  L  + + D      AL+ L+  V+TR+K
Sbjct:  300 GIAFQLIDDVLDFTSCSDQMGKPTSADLKLGLATGPVLFACQQFPEMNAMIMRRFSLPGDVDRARQYVLQSDGVQQTTYLAQQYCHEAIREISKLRPSPERD------ALIQLSEIVLTRDK 415          
BLAST of CX295879 vs. ExPASy Swiss-Prot
Match: PREA_PORPU (Prenyl transferase OS=Porphyra purpurea GN=preA PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 2.709e-14
Identity = 44/120 (36.67%), Postives = 71/120 (59.17%), Query Frame = 1
Query:    4 GLAYQLIDDVLDFTGTSASLGKGSLSDIRHGIITAPILFAMEEFPQLRTVVEQGFEDSSNVDIALEYLGKSRGIQKTRELXXXXXXXXXXXIDSLPENNDEDVTKSRRALLDLTHRVITR 363
            GLA+Q++DDVLD  G++ SLGK S +D  +G +TAPILFA+ +  +L  ++++ F D  ++ +AL  + KS GI K ++L           +  LP++          +L +LTH +ITR
Sbjct:  208 GLAFQIMDDVLDIAGSTKSLGKPSGADFMNGNLTAPILFALTQEGKLDQLIQREFSDERDISLALFLIKKSGGITKAKDLAKEQVQAALCCLQFLPKSAPVS------SLKELTHFIITR 321          
BLAST of CX295879 vs. ExPASy Swiss-Prot
Match: PREA_SYNY3 (Prenyl transferase OS=Synechocystis sp. (strain PCC 6803) GN=preA PE=3 SV=2)

HSP 1 Score: 78.1814 bits (191), Expect = 3.538e-14
Identity = 44/120 (36.67%), Postives = 72/120 (60.00%), Query Frame = 1
Query:    4 GLAYQLIDDVLDFTGTSASLGKGSLSDIRHGIITAPILFAMEEFPQLRTVVEQGFEDSSNVDIALEYLGKSRGIQKTRELXXXXXXXXXXXIDSLPENNDEDVTKSRRALLDLTHRVITR 363
            GLA+Q++DD+LDFT  +  LGK + SD+  G ITAP LFAME++P L  ++E+ F  + +++ ALE + +  GI+++REL           +  L      +++  R +LL+L   V+ R
Sbjct:  208 GLAFQIVDDILDFTSPTEVLGKPAGSDLISGNITAPALFAMEKYPLLGKLIEREFAQAGDLEQALELVEQGDGIRRSRELAANQAQLARQHLSVL------EMSAPRESLLELVDYVLGR 321          
BLAST of CX295879 vs. ExPASy Swiss-Prot
Match: COQ1_YEAST (Hexaprenyl pyrophosphate synthetase, mitochondrial OS=Saccharomyces cerevisiae GN=COQ1 PE=1 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 6.036e-14
Identity = 45/123 (36.59%), Postives = 72/123 (58.54%), Query Frame = 1
Query:    4 GLAYQLIDDVLDFTGTSASLGKGSLSDIRHGIITAPILFAMEEFPQLRTVVEQGFEDSSNVDIALEYLGKSRGIQKTRELXXXXXXXXXXXI-DSLPENNDEDVTKSRRALLDLTHRVITRNK 369
            G+ +QL+DD+LDFT +   LGK S +D++ GI TAP+LFA +E P L  ++ + F +  +V+  ++ +    GI KT+ L           + DSLPE++      +R AL  LT+ ++TR K
Sbjct:  357 GICFQLVDDMLDFTVSGKDLGKPSGADLKLGIATAPVLFAWKEDPSLGPLISRNFSERGDVEKTIDSVRLHNGIAKTKILAEEYRDKALQNLRDSLPESD------ARSALEFLTNSILTRRK 473          
BLAST of CX295879 vs. ExPASy Swiss-Prot
Match: COQ1_YARLI (Probable hexaprenyl pyrophosphate synthetase, mitochondrial OS=Yarrowia lipolytica GN=COQ1 PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 6.036e-14
Identity = 40/122 (32.79%), Postives = 76/122 (62.30%), Query Frame = 1
Query:    4 GLAYQLIDDVLDFTGTSASLGKGSLSDIRHGIITAPILFAMEEFPQLRTVVEQGFEDSSNVDIALEYLGKSRGIQKTRELXXXXXXXXXXXIDSLPENNDEDVTKSRRALLDLTHRVITRNK 369
            GL +Q++DD+LD++   + LGK + +D++ G+ TAP+LFA E++P+L  ++++ F+   +V+ A   + ++ G+ +TREL           +D LP       ++SR AL +LT +++ R+K
Sbjct:  337 GLCFQVVDDMLDYSEGESHLGKPAGADLKLGLATAPVLFAWEKYPELGDMIKRKFDGPGDVERARFLVQQADGLSRTRELAQKYCDEAVANLDLLP------YSESREALRNLTMKMMNRSK 452          
BLAST of CX295879 vs. ExPASy Swiss-Prot
Match: COQ1_NEUCR (Probable hexaprenyl pyrophosphate synthetase, mitochondrial OS=Neurospora crassa GN=NCU02305 PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 5.109e-13
Identity = 41/122 (33.61%), Postives = 68/122 (55.74%), Query Frame = 1
Query:    4 GLAYQLIDDVLDFTGTSASLGKGSLSDIRHGIITAPILFAMEEFPQLRTVVEQGFEDSSNVDIALEYLGKSRGIQKTRELXXXXXXXXXXXIDSLPENNDEDVTKSRRALLDLTHRVITRNK 369
            GLA+QL+DD+LD+T +   LGK + +D+  G+ TAP+LFA +  P+L  +V + FE   +   A E + +S GI++TR L           I   P++  +D       L+++  + + RNK
Sbjct:  334 GLAFQLVDDMLDYTRSEKELGKPAGADLELGLATAPLLFAWKTMPELGPLVGRKFEKEGDAARARELVLQSNGIEQTRALAQDYAEKAIEAISGFPDSEAKD------GLIEMAVKTLKRNK 449          
BLAST of CX295879 vs. ExPASy Swiss-Prot
Match: PREA_CYACA (Prenyl transferase OS=Cyanidium caldarium GN=preA PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 8.715e-13
Identity = 37/122 (30.33%), Postives = 75/122 (61.48%), Query Frame = 1
Query:    4 GLAYQLIDDVLDFTGTSASLGKGSLSDIRHGIITAPILFAMEEFPQLRTVVEQGFEDSSNVDIALEYLGKSRGIQKTRELXXXXXXXXXXXIDSLPENNDEDVTKSRRALLDLTHRVITRNK 369
            GLA+Q+IDD+LD T +S +LGK + SD++ G +TAP+LFA+ +  +L  ++E+ F + S++  A+  + ++  I+++ +L           I  LP ++++D      +L+++ + ++ R K
Sbjct:  208 GLAFQIIDDILDITSSSTALGKMTTSDLKLGNLTAPVLFALTKNSKLFKIIEREFCEKSDISEAINIIKETNAIEESFDLAYEHIEAAINSIKDLPTSSEKD------SLIEIAYDLLNRYK 323          
The following BLAST results are available for this feature:
BLAST of CX295879 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 12
Match NameE-valueIdentityDescription
DPS1_DICDI2.005e-1736.89Decaprenyl-diphosphate synthase OS=Dictyostelium d... [more]
DPS1_MOUSE1.100e-1536.89Decaprenyl-diphosphate synthase subunit 1 OS=Mus m... [more]
PREA_CYAPA1.876e-1534.29Prenyl transferase OS=Cyanophora paradoxa GN=preA ... [more]
DPS1_HUMAN3.200e-1536.07Decaprenyl-diphosphate synthase subunit 1 OS=Homo ... [more]
PREA_PORPU2.709e-1436.67Prenyl transferase OS=Porphyra purpurea GN=preA PE... [more]
PREA_SYNY33.538e-1436.67Prenyl transferase OS=Synechocystis sp. (strain PC... [more]
COQ1_YEAST6.036e-1436.59Hexaprenyl pyrophosphate synthetase, mitochondrial... [more]
COQ1_YARLI6.036e-1432.79Probable hexaprenyl pyrophosphate synthetase, mito... [more]
COQ1_NEUCR5.109e-1333.61Probable hexaprenyl pyrophosphate synthetase, mito... [more]
PREA_CYACA8.715e-1330.33Prenyl transferase OS=Cyanidium caldarium GN=preA ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC05076H03SK DroRLeaf1 Citrus clementina cDNA clone C05076H03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295879 ID=CX295879; Name=CX295879; organism=Citrus clementina; type=EST; length=597bp
CAGGGTCTGGCATATCAATTAATCGACGATGTTCTCGATTTCACTGGCAC
ATCAGCCTCTCTTGGAAAGGGTTCTTTATCTGACATCCGGCATGGAATCA
TAACAGCTCCAATATTGTTTGCCATGGAAGAGTTCCCTCAGTTACGCACA
GTAGTTGAGCAAGGCTTCGAGGATTCCTCAAATGTTGATATTGCCCTTGA
GTACCTTGGGAAGAGTCGAGGGATACAAAAGACAAGAGAACTGGCCGTGA
AGCATGCTAATCTTGCTGCAGCTGCGATTGATTCTCTACCTGAAAACAAT
GATGAGGATGTTACAAAGTCAAGGCGTGCACTTTTAGATCTCACTCATAG
AGTCATCACAAGAAATAAATAACAGAAGACCAACACATTGTGCCAGAGTT
TTTGTTTAATTATTTCAATTATTCTTCTTGTAAGGCGAGGGACTTTAACC
CCTTGGTTTTTTTTGTCACATTCTTTTCTTCTGATAAAAATATTTATTTT
CCGATCATTGTTCGAGGACCCAGATCTTGTAAATCATCCATTTGTGGAGT
AAGGATAACACAGCAATAATGTAACAAAAAAAAAAAAAAAAAAAAAA
back to top