CX296263

Overview
NameCX296263
Unique NameCX296263
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length661
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9358 contig Ccv1_Contig9358:734..1394. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX296263 vs. ExPASy Swiss-Prot
Match: VPEB_ARATH (Vacuolar-processing enzyme beta-isozyme OS=Arabidopsis thaliana GN=At1g62710 PE=2 SV=3)

HSP 1 Score: 348.591 bits (893), Expect = 1.693e-95
Identity = 164/221 (74.21%), Postives = 188/221 (85.07%), Query Frame = 1
Query:    1 GSIFEGVMPKDLDIYVTTASNAQESSFGTYCPGMDPSPPPEYITCLGDLYSVAWMEDSETHNLKRETISQQYQAVKERTSNFNNYNSGSHVMEYGNTSVKSEKLYLYQGFDPASANFPPNKLQ-PDQMGVVNQRDADLLFMWHMYKNAAEGSEKKSEMLKQITETMRHRKHLDASIDMIGVILFGPDKGSRILNSVGARGLPLVDDWQCLKSMVRVFETHC 660
            GSIFEG+MPKDL+IYVTTASNAQESS+GTYCPGM+PSPP EYITCLGDLYSVAWMEDSETHNLK+ETI QQY  VK RTSN+N Y+ GSHVMEYGN S+KSEKLYLYQGFDPA+ N P N+L    ++GVVNQRDADLLF+WHMY+ + +GS KK + LK++TET RHRKHLDAS+++I  ILFGP     +LN V   GLPLVDDW+CLKSMVRVFE HC
Sbjct:  214 GSIFEGIMPKDLNIYVTTASNAQESSYGTYCPGMNPSPPSEYITCLGDLYSVAWMEDSETHNLKKETIKQQYHTVKMRTSNYNTYSGGSHVMEYGNNSIKSEKLYLYQGFDPATVNLPLNELPVKSKIGVVNQRDADLLFLWHMYRTSEDGSRKKDDTLKELTETTRHRKHLDASVELIATILFGPT--MNVLNLVREPGLPLVDDWECLKSMVRVFEEHC 432          
BLAST of CX296263 vs. ExPASy Swiss-Prot
Match: VPE_SOYBN (Vacuolar-processing enzyme OS=Glycine max PE=2 SV=1)

HSP 1 Score: 343.199 bits (879), Expect = 7.111e-94
Identity = 157/221 (71.04%), Postives = 190/221 (85.97%), Query Frame = 1
Query:    1 GSIFEGVMPKDLDIYVTTASNAQESSFGTYCPGMDPSPPPEYITCLGDLYSVAWMEDSETHNLKRETISQQYQAVKERTSNFNNYNSGSHVMEYGNTSVKSEKLYLYQGFDPASANFPP-NKLQPDQMGVVNQRDADLLFMWHMYKNAAEGSEKKSEMLKQITETMRHRKHLDASIDMIGVILFGPDKGSRILNSVGARGLPLVDDWQCLKSMVRVFETHC 660
            GS+FEG+MPKDL+IYVTTASNAQE+S+GTYCPGMDPSPPPEYITCLGDLYSVAWMEDSE HNLKRE++ QQY++VK+RTSNFNNY  GSHVM+YG+T++ +EKLYLYQGFDPA+ NFPP N     +M VVNQRDA+L  +W MY+ +   SE K+++LKQI ET++HRKH+D S+++IGV+L+GP KGS +L SV A G  LVDDW CLKSMVRVFETHC
Sbjct:  223 GSVFEGIMPKDLNIYVTTASNAQENSWGTYCPGMDPSPPPEYITCLGDLYSVAWMEDSEAHNLKRESVKQQYKSVKQRTSNFNNYAMGSHVMQYGDTNITAEKLYLYQGFDPATVNFPPQNGRLETKMEVVNQRDAELFLLWQMYQRSNHQSENKTDILKQIAETVKHRKHIDGSVELIGVLLYGPGKGSSVLQSVRAPGSSLVDDWTCLKSMVRVFETHC 443          
BLAST of CX296263 vs. ExPASy Swiss-Prot
Match: LEGU_CANEN (Legumain OS=Canavalia ensiformis PE=1 SV=1)

HSP 1 Score: 340.117 bits (871), Expect = 6.020e-93
Identity = 157/221 (71.04%), Postives = 190/221 (85.97%), Query Frame = 1
Query:    1 GSIFEGVMPKDLDIYVTTASNAQESSFGTYCPGMDPSPPPEYITCLGDLYSVAWMEDSETHNLKRETISQQYQAVKERTSNFNNYNSGSHVMEYGNTSVKSEKLYLYQGFDPASANFPP-NKLQPDQMGVVNQRDADLLFMWHMYKNAAEGSEKKSEMLKQITETMRHRKHLDASIDMIGVILFGPDKGSRILNSVGARGLPLVDDWQCLKSMVRVFETHC 660
            GSIFEG+MPKDL+IYVTTASNAQE+SFGTYCPGM+P PP EY+TCLGDLYSV+WMEDSETHNLKRET+ QQYQ+V++RTSN N+Y  GSHVM+YG+T++ +EKLYLY GFDPA+ NFPP N     +M VVNQRDA+LLFMW MY+ +    EKK+ +L+QITET++HR HLD S+++IGV+L+GP K S +L+SV A GLPLVDDW CLKSMVRVFETHC
Sbjct:  203 GSIFEGIMPKDLNIYVTTASNAQENSFGTYCPGMNPPPPEEYVTCLGDLYSVSWMEDSETHNLKRETVQQQYQSVRKRTSNSNSYRFGSHVMQYGDTNITAEKLYLYHGFDPATVNFPPHNGNLEAKMEVVNQRDAELLFMWQMYQRSNHQPEKKTHILEQITETVKHRNHLDGSVELIGVLLYGPGKSSSVLHSVRAPGLPLVDDWTCLKSMVRVFETHC 423          
BLAST of CX296263 vs. ExPASy Swiss-Prot
Match: VPE_RICCO (Vacuolar-processing enzyme OS=Ricinus communis PE=1 SV=1)

HSP 1 Score: 334.339 bits (856), Expect = 3.303e-91
Identity = 156/221 (70.59%), Postives = 185/221 (83.71%), Query Frame = 1
Query:    1 GSIFEGVMPKDLDIYVTTASNAQESSFGTYCPGMDPSPPPEYITCLGDLYSVAWMEDSETHNLKRETISQQYQAVKERTSNFNNYNSGSHVMEYGNTSVKSEKLYLYQGFDPASANFPPNKLQPD-QMGVVNQRDADLLFMWHMYKNAAEGSEKKSEMLKQITETMRHRKHLDASIDMIGVILFGPDKGSRILNSVGARGLPLVDDWQCLKSMVRVFETHC 660
            GSIFEG+MPKD+DIYVTTASNAQESS+GTYCPGM+PSPPPE+ TCLGDLYSVAWMEDSE+HNLK+ET+ QQY +VK RTSN+N Y +GSHVM+YGN S+K++KLYL+QGFDPAS NFPPN    +  M VVNQRDA+L FMW +YK +  GSEKK E+L+QI + ++HR HLD+S+ +IG +LFGP K S IL SV   G PLVDDW CLKSMVRVFET C
Sbjct:  225 GSIFEGIMPKDVDIYVTTASNAQESSWGTYCPGMEPSPPPEFTTCLGDLYSVAWMEDSESHNLKKETVKQQYSSVKARTSNYNTYAAGSHVMQYGNQSIKADKLYLFQGFDPASVNFPPNNAHLNAPMEVVNQRDAELHFMWQLYKRSENGSEKKKEILQQIKDAIKHRSHLDSSMQLIGDLLFGPKKASAILKSVREPGSPLVDDWGCLKSMVRVFETCC 445          
BLAST of CX296263 vs. ExPASy Swiss-Prot
Match: VPE2_PHAVU (Vacuolar-processing enzyme OS=Phaseolus vulgaris PE=2 SV=1)

HSP 1 Score: 332.028 bits (850), Expect = 1.639e-90
Identity = 153/221 (69.23%), Postives = 187/221 (84.62%), Query Frame = 1
Query:    1 GSIFEGVMPKDLDIYVTTASNAQESSFGTYCPGMDPSPPPEYITCLGDLYSVAWMEDSETHNLKRETISQQYQAVKERTSNFNNYNSGSHVMEYGNTSVKSEKLYLYQGFDPASANFPP-NKLQPDQMGVVNQRDADLLFMWHMYKNAAEGSEKKSEMLKQITETMRHRKHLDASIDMIGVILFGPDKGSRILNSVGARGLPLVDDWQCLKSMVRVFETHC 660
            GSIFEG+MPKDL+IYVTTASNAQE+S+GTYCPGM P PPPEYITCLGDLYSVAWMEDSE+HNLK+E++ QQYQ+VK+RTSNF  Y  GSHVM+YG+ ++ +EKLYLY GFDPA+ NFPP N     +M VVNQRDA+LLFMW +Y+ +    EKK+++LKQI E ++HRKHLD S+++IGV+L+GP+K S +L SV   GLPLVDDW CLKSMVRV+ETHC
Sbjct:  221 GSIFEGIMPKDLNIYVTTASNAQENSWGTYCPGMYPPPPPEYITCLGDLYSVAWMEDSESHNLKKESVEQQYQSVKQRTSNFEAYAMGSHVMQYGDANMTAEKLYLYHGFDPATVNFPPHNGRLKSKMEVVNQRDAELLFMWQVYQRSNHLPEKKTDILKQIEEIVKHRKHLDGSVELIGVLLYGPEKASSVLRSVRTTGLPLVDDWTCLKSMVRVYETHC 441          
BLAST of CX296263 vs. ExPASy Swiss-Prot
Match: VPEG_ARATH (Vacuolar-processing enzyme gamma-isozyme OS=Arabidopsis thaliana GN=At4g32940 PE=2 SV=2)

HSP 1 Score: 265.388 bits (677), Expect = 1.884e-70
Identity = 128/223 (57.40%), Postives = 160/223 (71.75%), Query Frame = 1
Query:    1 GSIFEGVMPKDLDIYVTTASNAQESSFGTYCPGMDPSPPPEYITCLGDLYSVAWMEDSETHNLKRETISQQYQAVKERTSNFNNYNSGSHVMEYGNTSVKSEKLYLYQGFDPASANF---PPNKLQPDQMGVVNQRDADLLFMWHMYKNAAEGSEKKSEMLKQITETMRHRKHLDASIDMIGVILFGPDKGSRILNSVGARGLPLVDDWQCLKSMVRVFETHC 660
            GSIFEG++P+ L+IY TTASNA+ESS+GTYCPG +PSPPPEY TCLGDLYSVAWMEDS  HNL+ ET+ QQY+ VK RT+    Y+ GSHVM+YG+  +  + L LY G +PA+ NF     N L+P    V NQRDADL+  W  Y+ A EGS +K+E  KQ+ E M HR H+D S+ ++G ILFG  +G  +LN V + G PLVDDW CLK+ VR FE HC
Sbjct:  222 GSIFEGLLPEGLNIYATTASNAEESSWGTYCPGEEPSPPPEYETCLGDLYSVAWMEDSGMHNLQTETLHQQYELVKRRTAPV-GYSYGSHVMQYGDVGISKDNLDLYMGTNPANDNFTFADANSLKPPSR-VTNQRDADLVHFWEKYRKAPEGSARKTEAQKQVLEAMSHRLHIDNSVILVGKILFGISRGPEVLNKVRSAGQPLVDDWNCLKNQVRAFERHC 442          
BLAST of CX296263 vs. ExPASy Swiss-Prot
Match: VPE_CITSI (Vacuolar-processing enzyme OS=Citrus sinensis PE=2 SV=1)

HSP 1 Score: 263.848 bits (673), Expect = 5.483e-70
Identity = 128/223 (57.40%), Postives = 162/223 (72.65%), Query Frame = 1
Query:    1 GSIFEGVMPKDLDIYVTTASNAQESSFGTYCPGMDPSPPPEYITCLGDLYSVAWMEDSETHNLKRETISQQYQAVKERTSNFNNYNSGSHVMEYGNTSVKSEKLYLYQGFDPASANF---PPNKLQPDQMGVVNQRDADLLFMWHMYKNAAEGSEKKSEMLKQITETMRHRKHLDASIDMIGVILFGPDKGSRILNSVGARGLPLVDDWQCLKSMVRVFETHC 660
            GSIFEG++ + L+IY TTASNA+ESS+GTYCPG  P PPPEY TCLGDLYS+AWMEDS+ HNL+ ET+ QQY+ VK RT+++N+Y  GSHVM+YG+  +    L+ Y G +PA+ N+     N L+P     VNQRDADLL  W  Y+ A EG+ +K+E  KQ  E M HR H+D SI +IG +LFG +KG  ILN+V   G PLVDDW CLKS+VR FE+HC
Sbjct:  223 GSIFEGLLLEGLNIYATTASNAEESSWGTYCPGEIPGPPPEYSTCLGDLYSIAWMEDSDIHNLRTETLHQQYELVKTRTASYNSY--GSHVMQYGDIGLSKNNLFTYLGTNPANDNYTFVDENSLRPASK-AVNQRDADLLHFWDKYRKAPEGTPRKAEAQKQFFEAMSHRMHVDHSIKLIGKLLFGIEKGPEILNTVRPAGQPLVDDWGCLKSLVRTFESHC 442          
BLAST of CX296263 vs. ExPASy Swiss-Prot
Match: VPE1_PHAVU (Vacuolar-processing enzyme OS=Phaseolus vulgaris PE=1 SV=1)

HSP 1 Score: 263.462 bits (672), Expect = 7.161e-70
Identity = 126/222 (56.76%), Postives = 159/222 (71.62%), Query Frame = 1
Query:    1 GSIFEGVMPKDLDIYVTTASNAQESSFGTYCPGMDPSPPPEYITCLGDLYSVAWMEDSETHNLKRETISQQYQAVKERTSNFNNYNSGSHVMEYGNTSVKSEKLYLYQGFDPASAN--FPPNKLQPDQMGVVNQRDADLLFMWHMYKNAAEGSEKKSEMLKQITETMRHRKHLDASIDMIGVILFGPDKGSRILNSVGARGLPLVDDWQCLKSMVRVFETHC 660
            GSIFEG++P+D+++Y TTASNA ESS+GTYCPG DPSPPPEY TCLGDLYSVAWMEDS+ HNL+ ET+ QQY+ VKERT +   Y  GSHVM+YG+  +  + L+ Y G DPA+ N  F            VNQRDADL+  W  ++ A EGS KK+E  KQ+ E M HR H+D S++++G +LFG +K   +LN+V   G  LVDDW CLK+MVR FETHC
Sbjct:  212 GSIFEGLLPEDINVYATTASNADESSWGTYCPGEDPSPPPEYSTCLGDLYSVAWMEDSDRHNLRTETLHQQYKLVKERTISGGLY-YGSHVMQYGDVGLSKDILFHYLGTDPANENLTFVDENSLWSSSKAVNQRDADLVHFWDKFRKAPEGSPKKNEARKQVLEVMSHRMHIDDSVELVGKLLFGIEKAPELLNAVRPAGSALVDDWDCLKTMVRTFETHC 432          
BLAST of CX296263 vs. ExPASy Swiss-Prot
Match: VPEA_ARATH (Vacuolar-processing enzyme alpha-isozyme OS=Arabidopsis thaliana GN=At2g25940 PE=2 SV=2)

HSP 1 Score: 260.766 bits (665), Expect = 4.641e-69
Identity = 129/223 (57.85%), Postives = 162/223 (72.65%), Query Frame = 1
Query:    1 GSIFEGVMPKDLDIYVTTASNAQESSFGTYCPGMDPSPPPEYITCLGDLYSVAWMEDSETHNLKRETISQQYQAVKERTSNFNNYNSGSHVMEYGNTSVKSEKLYLYQGFDPASANFP---PNKLQPDQMGVVNQRDADLLFMWHMYKNAAEGSEKKSEMLKQITETMRHRKHLDASIDMIGVILFGPDKGSRILNSVGARGLPLVDDWQCLKSMVRVFETHC 660
            GSIFEG++P+ L+IY TTASNA+ESS+GTYCPG DPSPP EY TCLGDLYSVAW+EDSE HNL+ ET+ +QY+ VK+RT+  +  + GSHVME+G+  +  EKL L+ G +PA  NF     N ++P    V NQRDADL+  WH Y+ A EGS +K E  KQ+ E M HR H+D SI +IG++LFG + G  +LN V   G PLVDDW CLKS+VR FE HC
Sbjct:  207 GSIFEGLLPEGLNIYATTASNAEESSWGTYCPGEDPSPPSEYETCLGDLYSVAWIEDSEKHNLQTETLHEQYELVKKRTAG-SGKSYGSHVMEFGDIGLSKEKLVLFMGTNPADENFTFVNENSIRPPSR-VTNQRDADLVHFWHKYQKAPEGSARKVEAQKQVLEAMSHRLHVDNSILLIGILLFGLE-GHAVLNKVRPSGEPLVDDWDCLKSLVRAFERHC 426          
BLAST of CX296263 vs. ExPASy Swiss-Prot
Match: VPE_VICSA (Vacuolar-processing enzyme OS=Vicia sativa PE=1 SV=1)

HSP 1 Score: 250.751 bits (639), Expect = 4.803e-66
Identity = 124/226 (54.87%), Postives = 157/226 (69.47%), Query Frame = 1
Query:    1 GSIFEGVMPKDLDIYVTTASNAQESSFGTYCPGMDPSPPPEYITCLGDLYSVAWMEDSETHNLKRETISQQYQAVKERTSNFNNYNSGSHVMEYGNTSVKSEKLYLYQGFDPASAN-----FPPNKLQ-PDQMGVVNQRDADLLFMWHMYKNAAEGSEKKSEMLKQITETMRHRKHLDASIDMIGVILFGPDKGSRILNSVGARGLPLVDDWQCLKSMVRVFETHC 660
            GSIFEG++P DL+IY TTASNA+ESS+G YCPG  P PPPEY TCLGDLYS+AWMEDSE HNL+ E++ QQY+ VK RT    +   GSHVMEYG+  +    LY Y G +PA+ N        N L+       VNQRDADL+  W  ++ A EGS +K+E  KQ+ E M HRKH+D S+ +IG +LFG +KG+ +L+ V   G PLVD+W CLK+MV+ FETHC
Sbjct:  219 GSIFEGLLPDDLNIYATTASNAEESSWGYYCPGDKPPPPPEYSTCLGDLYSIAWMEDSEVHNLQTESLQQQYKLVKNRTI---SEPYGSHVMEYGDIGLSKNDLYQYLGTNPANDNNSFVDETENSLKLRTPSAAVNQRDADLIHFWEKFRKAPEGSSQKNEAEKQVLEAMSHRKHIDNSVKLIGQLLFGIEKGTELLDVVRPAGSPLVDNWDCLKTMVKTFETHC 441          
The following BLAST results are available for this feature:
BLAST of CX296263 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 18
Match NameE-valueIdentityDescription
VPEB_ARATH1.693e-9574.21Vacuolar-processing enzyme beta-isozyme OS=Arabido... [more]
VPE_SOYBN7.111e-9471.04Vacuolar-processing enzyme OS=Glycine max PE=2 SV=... [more]
LEGU_CANEN6.020e-9371.04Legumain OS=Canavalia ensiformis PE=1 SV=1[more]
VPE_RICCO3.303e-9170.59Vacuolar-processing enzyme OS=Ricinus communis PE=... [more]
VPE2_PHAVU1.639e-9069.23Vacuolar-processing enzyme OS=Phaseolus vulgaris P... [more]
VPEG_ARATH1.884e-7057.40Vacuolar-processing enzyme gamma-isozyme OS=Arabid... [more]
VPE_CITSI5.483e-7057.40Vacuolar-processing enzyme OS=Citrus sinensis PE=2... [more]
VPE1_PHAVU7.161e-7056.76Vacuolar-processing enzyme OS=Phaseolus vulgaris P... [more]
VPEA_ARATH4.641e-6957.85Vacuolar-processing enzyme alpha-isozyme OS=Arabid... [more]
VPE_VICSA4.803e-6654.87Vacuolar-processing enzyme OS=Vicia sativa PE=1 SV... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC05138A10SK FerrChloL1 Citrus clementina cDNA clone C05138A10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296263 ID=CX296263; Name=CX296263; organism=Citrus clementina; type=EST; length=661bp
GGTAGCATTTTTGAAGGTGTAATGCCCAAAGATCTAGATATATATGTCAC
TACTGCATCAAATGCACAAGAGAGCAGCTTTGGGACTTATTGCCCTGGAA
TGGATCCTTCTCCACCTCCAGAGTACATCACTTGCTTGGGGGATTTGTAC
AGTGTTGCTTGGATGGAGGACAGTGAGACTCACAATTTGAAGAGAGAGAC
CATAAGTCAACAGTATCAAGCTGTGAAGGAACGGACTTCCAATTTTAACA
ATTACAATTCTGGATCTCATGTGATGGAATATGGGAACACAAGCGTCAAA
TCAGAGAAGCTATACTTGTATCAAGGTTTCGATCCTGCCAGCGCCAACTT
TCCTCCGAACAAGCTTCAGCCTGATCAAATGGGAGTTGTCAACCAGAGAG
ACGCAGATCTTCTCTTCATGTGGCATATGTACAAAAATGCAGCAGAGGGA
TCAGAAAAGAAATCAGAAATGCTTAAGCAGATTACAGAGACAATGAGGCA
CAGAAAACACTTAGATGCAAGTATTGATATGATTGGAGTAATTTTATTTG
GACCAGATAAGGGTTCTAGAATTCTTAATTCCGTTGGAGCACGTGGCCTG
CCTCTTGTTGATGACTGGCAATGCCTGAAATCAATGGTTCGTGTTTTCGA
GACTCACTGTG
back to top