CX296307

Overview
NameCX296307
Unique NameCX296307
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length716
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX296307 vs. ExPASy Swiss-Prot
Match: ERF17_ARATH (Ethylene-responsive transcription factor ERF017 OS=Arabidopsis thaliana GN=ERF017 PE=2 SV=1)

HSP 1 Score: 167.162 bits (422), Expect = 8.060e-41
Identity = 96/180 (53.33%), Postives = 115/180 (63.89%), Query Frame = 2
Query:  146 VEKPAERSDSRYKGVRKRKWGKYVSEIRLPNSRARIWLGSYDTAEKAARAFDAALFCLRGRSAKFNFPDNPPDISGGRSLKPSEIQAVAAQFANSEPLRSQSPEQSVSELQTEYLSPSISEATVQLDSDGVFDGXXXXXXXXXXXXNYPSEYGIFPGFDDLSN----DIFAPQL-PAVDF 670
            +E  +    S+YKGVRKRKWGK+VSEIRLPNSR RIWLGSYDT EKAARAFDAAL+CLRG +AKFNFPDNPP ISGGR+L  SEI+  AA+FANS      S   +  E++ E        A+  +D D  F              N+ SE+G+FPGFDD S+    D F  QL P  D+
Sbjct:    1 MEGSSSSMQSKYKGVRKRKWGKWVSEIRLPNSRERIWLGSYDTPEKAARAFDAALYCLRGNNAKFNFPDNPPVISGGRNLSRSEIREAAARFANS--AEDDSSGGAGYEIRQE-------SASTSMDVDSEF----LSMLPTVGSGNFASEFGLFPGFDDFSDEYSGDRFREQLSPTQDY 167          
BLAST of CX296307 vs. ExPASy Swiss-Prot
Match: ERF18_ARATH (Ethylene-responsive transcription factor ERF018 OS=Arabidopsis thaliana GN=ERF018 PE=2 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 8.631e-35
Identity = 93/196 (47.45%), Postives = 114/196 (58.16%), Query Frame = 2
Query:  131 MVKHVVEKPAERSD----SRYKGVRKRKWGKYVSEIRLPNSRARIWLGSYDTAEKAARAFDAALFCLRGRSAKFNFPDNPPDISGGRSLKPSEIQAVAAQFANSEPLRSQSPEQS----VSELQTEYLSPSISEATVQLDSDGVFDGXXXXXXXXXXXXNYPSEYGIFPGFDDLS----NDIFAPQLPAVDFADEN 682
            MVK  +++  ++ +    S+YKGVRKRKWGK+VSEIRLP+SR RIWLGSYDT EKAARAFDAA FCLRG  A FNFP+NPP IS  +SL P EIQ  AA+FAN+     +  E+S     SE++ E  S S S AT  +D D  F                P  +G     DD S     D F   LP  D+  E+
Sbjct:    1 MVKQAMKEEEKKRNTAMQSKYKGVRKRKWGKWVSEIRLPHSRERIWLGSYDTPEKAARAFDAAQFCLRGGDANFNFPNNPPSISVEKSLTPPEIQEAAARFANTFQDIVKGEEESGLVPGSEIRPESPSTSASVATSTVDYDFSF------------LDLLPMNFGFDSFSDDFSGFSGGDRFTEILPIEDYGGES 184          
BLAST of CX296307 vs. ExPASy Swiss-Prot
Match: ERF16_ARATH (Ethylene-responsive transcription factor ERF016 OS=Arabidopsis thaliana GN=ERF016 PE=2 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 1.628e-33
Identity = 69/95 (72.63%), Postives = 80/95 (84.21%), Query Frame = 2
Query:  176 RYKGVRKRKWGKYVSEIRLPNSRARIWLGSYDTAEKAARAFDAALFCLRGRSAKFNFPDNPPDISGGRSLKPSEIQAVAAQFANSEPLRSQSPEQ 460
            +Y GVRKRKWGK+V+EIRLPNSR RIWLGS+D+AEKAARAFDAAL+CLRG  A+FNFPDNPP+I GGRSL P +IQ VA++FA  E L    PEQ
Sbjct:    6 KYTGVRKRKWGKWVAEIRLPNSRDRIWLGSFDSAEKAARAFDAALYCLRGPGARFNFPDNPPEIPGGRSLTPQQIQVVASRFACEEEL--LPPEQ 98          
BLAST of CX296307 vs. ExPASy Swiss-Prot
Match: ERF15_ARATH (Ethylene-responsive transcription factor ERF015 OS=Arabidopsis thaliana GN=ERF015 PE=2 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.429e-21
Identity = 51/93 (54.84%), Postives = 64/93 (68.82%), Query Frame = 2
Query:  161 ERSDSRYKGVRKRKWGKYVSEIRLPNSRARIWLGSYDTAEKAARAFDAALFCLRGRSAKFNFP-DNPPDISGG--RSLKPSEIQAVAAQFANS 430
            +R    Y+GVRKR WGK+VSEIR+P +  RIWLGSYD  EKAARA+DAALFC+RG    +NFP D  P +  G  R L   +IQ +A  +A+S
Sbjct:   21 DRKFKCYRGVRKRSWGKWVSEIRVPKTGRRIWLGSYDAPEKAARAYDAALFCIRGEKGVYNFPTDKKPQLPEGSVRPLSKLDIQTIATNYASS 113          
BLAST of CX296307 vs. ExPASy Swiss-Prot
Match: ERF13_ARATH (Ethylene-responsive transcription factor ERF013 OS=Arabidopsis thaliana GN=ERF013 PE=2 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 2.064e-20
Identity = 58/126 (46.03%), Postives = 74/126 (58.73%), Query Frame = 2
Query:   71 NSIQHHSSKSRIPIT*NPLKMVKHVVEKPAERSDSRYKGVRKRKWGKYVSEIRLPNSRARIWLGSYDTAEKAARAFDAALFCLRGRSAKFNFPD----NP--PDISGGRSLKPSEIQAVAAQFANS 430
            +S+ H SS S      +    ++H   +  +    +YKGVR R WG +V+EIR PN + RIWLGSY TAE AARA+DAAL CL+G  A  NFP+    +P   +I     L P  IQ VAAQ ANS
Sbjct:   15 SSLSHSSSSSS-----SSTSALRH---QSCKNKIKKYKGVRMRSWGSWVTEIRAPNQKTRIWLGSYSTAEAAARAYDAALLCLKGPKANLNFPNITTTSPFLMNIDEKTLLSPKSIQKVAAQAANS 132          
BLAST of CX296307 vs. ExPASy Swiss-Prot
Match: ERF12_ARATH (Ethylene-responsive transcription factor ERF012 OS=Arabidopsis thaliana GN=ERF012 PE=2 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 2.696e-20
Identity = 57/133 (42.86%), Postives = 70/133 (52.63%), Query Frame = 2
Query:   77 IQHHSSKSRIPIT*NPLKMVKH--------VVEKPAERSDSRYKGVRKRKWGKYVSEIRLPNSRARIWLGSYDTAEKAARAFDAALFCLRGRSAKFNFPDNPPD-------ISGGRSLKPSEIQAVAAQFANS 430
            IQ  S+K  +P++ +P                 K  +    +YKGVR R WG +VSEIR PN + RIWLGSY TAE AARA+D AL CL+G  A  NFP +          +     L P  IQ VAAQ ANS
Sbjct:    8 IQTSSTKKEMPLSSSPSSSSSSSSSSSSSSCKNKNKKSKIKKYKGVRMRSWGSWVSEIRAPNQKTRIWLGSYSTAEAAARAYDVALLCLKGPQANLNFPTSSSSHHLLDNLLDENTLLSPKSIQRVAAQAANS 140          
BLAST of CX296307 vs. ExPASy Swiss-Prot
Match: ERF23_ARATH (Ethylene-responsive transcription factor ERF023 OS=Arabidopsis thaliana GN=ERF023 PE=2 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 7.843e-20
Identity = 44/84 (52.38%), Postives = 59/84 (70.24%), Query Frame = 2
Query:  179 YKGVRKRKWGKYVSEIRLPNSRARIWLGSYDTAEKAARAFDAALFCLRGRSAKFNFPDNPPDISGGRSLKPSEIQAVAAQFANS 430
            Y GVRKR+WGK+VSEIR P  ++RIWLGS+   E AA+A+D A FCL+GR A+ NFP+   D+    +  P +IQ  AA+ AN+
Sbjct:   45 YHGVRKRRWGKWVSEIREPRKKSRIWLGSFPVPEMAAKAYDVAAFCLKGRKAQLNFPEEIEDLPRPSTCTPRDIQVAAAKAANA 128          
BLAST of CX296307 vs. ExPASy Swiss-Prot
Match: RAP29_ARATH (Ethylene-responsive transcription factor RAP2-9 OS=Arabidopsis thaliana GN=RAP2-9 PE=2 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 2.282e-19
Identity = 52/116 (44.83%), Postives = 70/116 (60.34%), Query Frame = 2
Query:   86 HSSKSRIPIT*NPLKMVKHVVEKPAERSDSRYKGVRKRKWGKYVSEIRLPNSRARIWLGSYDTAEKAARAFDAALFCLRGRSAKFNFPDNP-PDISGGRSL----KPSEIQAVAAQ 418
            +  K   P+    + M +         ++ RYKG+R RKWGK+V+EIR PN R+RIWLGSY TA  AARA+D A+F LRG SA+ NFP+    D +GG  L     P+ I+  AA+
Sbjct:    5 YKRKQEFPMVKEGMVMTEKPKRNLISSNEKRYKGIRMRKWGKWVAEIREPNKRSRIWLGSYKTAVAAARAYDTAVFYLRGPSARLNFPEEVFKDGNGGEGLGGDMSPTLIRKKAAE 120          
BLAST of CX296307 vs. ExPASy Swiss-Prot
Match: ERF14_ARATH (Ethylene-responsive transcription factor ERF014 OS=Arabidopsis thaliana GN=ERF014 PE=2 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 8.671e-19
Identity = 58/118 (49.15%), Postives = 68/118 (57.63%), Query Frame = 2
Query:  176 RYKGVRKRKWGKYVSEIRLPNSRARIWLGSYDTAEKAARAFDAALFCLRGRSA-KFNFPD---------NPPDISGGRSLKPSEIQAVAAQFANSEPLRSQSPEQSVSELQTEYLSPS 499
            +YKGVR R WG +VSEIR PN + RIWLGSY TAE AARA+DAAL CL+G SA   NFP+         N  D +   S K  +  A AA  AN++P  S     SVS       SPS
Sbjct:   34 KYKGVRMRSWGSWVSEIRAPNQKTRIWLGSYSTAEAAARAYDAALLCLKGSSANNLNFPEISTSLYHIINNGDNNNDMSPKSIQRVAAAAAAANTDPSSS-----SVSTSSPLLSSPS 146          
BLAST of CX296307 vs. ExPASy Swiss-Prot
Match: ERF56_ARATH (Ethylene-responsive transcription factor ERF056 OS=Arabidopsis thaliana GN=ERF056 PE=2 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 2.523e-18
Identity = 56/158 (35.44%), Postives = 92/158 (58.23%), Query Frame = 2
Query:   47 NHTQKFRVNSIQHHSSKSRIPIT*-NPLKMVKHVVEKPAERSDSRYKGVRKRKWGKYVSEIRLPNSRARIWLGSYDTAEKAARAFDAALFCLRGRSAKFNFPD-NPPDISGGRSLKPSEIQAVAAQFANSEPLRSQSPEQSVSELQTEYLSPSISEAT 514
            N    ++++ IQ+  +  R  I+  +P ++    +     ++ + Y+GVR+R WGK+V+EIRLP +R R+WLG+++TAEKAA A+D A F LRG  AK NFP+    D++   S   +++QA+      +E +       SVS+   EY   S+S+ T
Sbjct:   26 NQLTPYQIHQIQNQLNHRRSTISNLSPNRIRMKNLTPSTSKTKNLYRGVRQRHWGKWVAEIRLPKNRTRLWLGTFETAEKAALAYDQAAFQLRGDIAKLNFPNLIHEDMNPLPSSVDTKLQAICKSLRKTEEI------CSVSDQTKEYSVYSVSDKT 177          
The following BLAST results are available for this feature:
BLAST of CX296307 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 126
Match NameE-valueIdentityDescription
ERF17_ARATH8.060e-4153.33Ethylene-responsive transcription factor ERF017 OS... [more]
ERF18_ARATH8.631e-3547.45Ethylene-responsive transcription factor ERF018 OS... [more]
ERF16_ARATH1.628e-3372.63Ethylene-responsive transcription factor ERF016 OS... [more]
ERF15_ARATH1.429e-2154.84Ethylene-responsive transcription factor ERF015 OS... [more]
ERF13_ARATH2.064e-2046.03Ethylene-responsive transcription factor ERF013 OS... [more]
ERF12_ARATH2.696e-2042.86Ethylene-responsive transcription factor ERF012 OS... [more]
ERF23_ARATH7.843e-2052.38Ethylene-responsive transcription factor ERF023 OS... [more]
RAP29_ARATH2.282e-1944.83Ethylene-responsive transcription factor RAP2-9 OS... [more]
ERF14_ARATH8.671e-1949.15Ethylene-responsive transcription factor ERF014 OS... [more]
ERF56_ARATH2.523e-1835.44Ethylene-responsive transcription factor ERF056 OS... [more]

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Properties
Property NameValue
Genbank descriptionC05138F04SK FerrChloL1 Citrus clementina cDNA clone C05138F04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296307 ID=CX296307; Name=CX296307; organism=Citrus clementina; type=EST; length=716bp
CCGAATTCGGCACGAGGGCAAACAGGAATACAAGAATCATCATCCAAATC
ACACTCAAAAGTTCCGAGTCAACTCGATACAGCACCACTCGTCTAAATCA
AGAATACCCATAACCTGAAACCCTTTAAAAATGGTGAAGCACGTAGTCGA
AAAGCCTGCTGAGAGAAGTGACTCTCGTTACAAGGGTGTCCGAAAGCGAA
AGTGGGGGAAATATGTGTCTGAAATCAGACTACCCAACAGCCGTGCCCGT
ATCTGGCTGGGCTCCTACGACACAGCAGAAAAAGCAGCGCGTGCTTTCGA
CGCTGCTTTGTTTTGCTTACGTGGCCGATCAGCCAAGTTTAATTTCCCGG
ACAACCCACCCGACATATCAGGCGGGCGCTCACTTAAGCCATCTGAGATT
CAAGCTGTGGCGGCTCAGTTCGCGAATTCGGAGCCGCTGAGGAGTCAATC
GCCAGAACAGTCGGTGTCCGAATTGCAAACGGAGTACTTATCGCCGTCGA
TTTCTGAGGCTACGGTTCAGTTGGACAGCGATGGGGTTTTTGACGGGTCT
TTATTGGATCTTTTAACGGCATCGAGTTCCAGTAACTACCCTTCCGAATA
TGGGATATTTCCTGGGTTTGATGACCTGTCTAATGACATTTTTGCTCCGC
AACTCCCAGCTGTTGATTTTGCAGACGAGAATTTTGATGGGCTATTGTTG
AAATCAGATTCGTTTC
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