CX296312

Overview
NameCX296312
Unique NameCX296312
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length659
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX296312_ssr85 microsatellite CX296312_ssr85:85..99. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig4991 contig Ccv1_Contig4991:425..1083. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX296312 vs. ExPASy Swiss-Prot
Match: CB4A_ARATH (Chlorophyll a-b binding protein CP29.1, chloroplastic OS=Arabidopsis thaliana GN=LHCB4.1 PE=1 SV=1)

HSP 1 Score: 322.783 bits (826), Expect = 9.853e-88
Identity = 154/170 (90.59%), Postives = 163/170 (95.88%), Query Frame = -2
Query:  146 QSTPLQPYTEVFGLQRFRECELIHGRWAMLATLGALTVEWLTGITWQDAGKVELVEGSSYLGQPLPFSITTLIWIEVLVIGYIEFQRNSELDPEKRLYPGGKFFDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAVVTGKGPLNNWATHLSDPLHTTILDTFIS 655
            +STP QPY+EVFG+QRFRECELIHGRWAMLATLGAL+VEWLTG+TWQDAGKVELV+GSSYLGQPLPFSI+TLIWIEVLVIGYIEFQRN+ELD EKRLYPGGKFFDPLGLAADPEK A LQLAEIKHARLAMVAFLGFAVQA  TGKGPLNNWATHLSDPLHTTI+DTF S
Sbjct:  120 KSTPFQPYSEVFGIQRFRECELIHGRWAMLATLGALSVEWLTGVTWQDAGKVELVDGSSYLGQPLPFSISTLIWIEVLVIGYIEFQRNAELDSEKRLYPGGKFFDPLGLAADPEKTAQLQLAEIKHARLAMVAFLGFAVQAAATGKGPLNNWATHLSDPLHTTIIDTFSS 289          
BLAST of CX296312 vs. ExPASy Swiss-Prot
Match: CB4B_ARATH (Chlorophyll a-b binding protein CP29.2, chloroplastic OS=Arabidopsis thaliana GN=LHCB4.2 PE=1 SV=1)

HSP 1 Score: 321.242 bits (822), Expect = 2.867e-87
Identity = 153/170 (90.00%), Postives = 162/170 (95.29%), Query Frame = -2
Query:  146 QSTPLQPYTEVFGLQRFRECELIHGRWAMLATLGALTVEWLTGITWQDAGKVELVEGSSYLGQPLPFSITTLIWIEVLVIGYIEFQRNSELDPEKRLYPGGKFFDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAVVTGKGPLNNWATHLSDPLHTTILDTFIS 655
            +STP QPY+EVFGLQRFRECELIHGRWAMLATLGA+TVEWLTG+TWQDAGKVELV+GSSYLGQPLPFSI+TLIWIEVLVIGYIEFQRN+ELD EKRLYPGGKFFDPLGLA+DP KKA LQLAEIKHARLAMV FLGFAVQA  TGKGPLNNWATHLSDPLHTTI+DTF S
Sbjct:  117 KSTPFQPYSEVFGLQRFRECELIHGRWAMLATLGAITVEWLTGVTWQDAGKVELVDGSSYLGQPLPFSISTLIWIEVLVIGYIEFQRNAELDSEKRLYPGGKFFDPLGLASDPVKKAQLQLAEIKHARLAMVGFLGFAVQAAATGKGPLNNWATHLSDPLHTTIIDTFSS 286          
BLAST of CX296312 vs. ExPASy Swiss-Prot
Match: CB4C_ARATH (Chlorophyll a-b binding protein CP29.3, chloroplastic OS=Arabidopsis thaliana GN=LHCB4.3 PE=1 SV=1)

HSP 1 Score: 261.151 bits (666), Expect = 3.521e-69
Identity = 128/155 (82.58%), Postives = 141/155 (90.97%), Query Frame = -2
Query:  194 MQSTPLQPYTEVFGLQRFRECELIHGRWAMLATLGALTVEWLTGITWQDAGKVELVEGSSYLGQPLPFSITTLIWIEVLVIGYIEFQRNSELDPEKRLYPGGKFFDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAVVTGKGPLNNWAT 658
            ++ TP QPYTEVFG+QRFRECELIHGRWAML TLGA+ VE LTGI WQDAGKVELVEGSSYLGQPLPFS+TTLIWIEVLV+GYIEFQRNSELDPEKR+YPGG +FDPLGLAADPEK  TL+LAEIKH+RLAMVAFL FA+QA  TGKGP++  AT
Sbjct:  120 IKPTPFQPYTEVFGIQRFRECELIHGRWAMLGTLGAIAVEALTGIAWQDAGKVELVEGSSYLGQPLPFSLTTLIWIEVLVVGYIEFQRNSELDPEKRIYPGG-YFDPLGLAADPEKLDTLKLAEIKHSRLAMVAFLIFALQAAFTGKGPVSFLAT 273          
BLAST of CX296312 vs. ExPASy Swiss-Prot
Match: CB29_CHLRE (Chlorophyll a-b binding protein CP29 OS=Chlamydomonas reinhardtii GN=Lhcb4 PE=1 SV=3)

HSP 1 Score: 191.43 bits (485), Expect = 3.426e-48
Identity = 99/150 (66.00%), Postives = 119/150 (79.33%), Query Frame = -2
Query:  197 LQPYTEVFGLQRFRECELIHGRWAMLATLGALTVEWLTGITWQDAGKVELVEGSSYLGQPLPFSITTLIWIEVLVIGYIEFQRNSELDPEKRLYPGGKFFDPLGLAADPEKKA-TLQLAEIKHARLAMVAFLGFAVQAVVTGKGPLNNWA 643
            L PY+EVFGL RFRECELIHGRWAMLA LGAL  E  TG++W +AGKVEL +G+SY G  LPFSIT LIWIEV+++G  EF RNSE +PEKR YPGG  FDPL LA++ E++A  L+ AEIKHARLAMV+F G+ VQA+ TG+G L + A
Sbjct:  121 LAPYSEVFGLARFRECELIHGRWAMLACLGALVAEATTGVSWVEAGKVEL-DGASYAGLSLPFSITQLIWIEVILVGGAEFYRNSETNPEKRCYPGG-VFDPLKLASEDEERAFRLKTAEIKHARLAMVSFFGYGVQALSTGEGALGSLA 268          
BLAST of CX296312 vs. ExPASy Swiss-Prot
Match: CB11_SOLLC (Chlorophyll a-b binding protein 6A, chloroplastic OS=Solanum lycopersicum GN=CAB6A PE=2 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 2.914e-31
Identity = 76/160 (47.50%), Postives = 103/160 (64.38%), Query Frame = -2
Query:  149 LQRFRECELIHGRWAMLATLGALTVEWLTGITWQDAGKVELVEG--SSYLGQPLPF-SITTLIWIEVLVIGYIEFQRNSELDPEKRLYPGGKFFDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAV-QAVVTGKGPLNNWATHLSDPLHTTILDTFI 616
            L+R++E ELIH RWAMLA  G +  E L    W  A +   + G  ++YLGQP+P+ ++ T++ IE L I ++E QR+ E D EK+ YPGG F DPLG + DP K   L++ EIK+ RLA++A +GF V Q+   G GPL N ATHL+DP H  I D  I
Sbjct:   81 LERYKESELIHCRWAMLAVPGIIVPEALGLGNWVKAQEWAAIPGGQATYLGQPVPWGTLPTILAIEFLAIAFVEHQRSMEKDSEKKKYPGGAF-DPLGYSKDPAKFEELKVKEIKNGRLALLAIVGFCVQQSAYLGTGPLENLATHLADPWHNNIGDVII 239          
BLAST of CX296312 vs. ExPASy Swiss-Prot
Match: CB121_HORVU (Chlorophyll a-b binding protein 1B-21, chloroplastic OS=Hordeum vulgare GN=LHC Ib-21 PE=1 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 1.107e-30
Identity = 81/170 (47.65%), Postives = 103/170 (60.59%), Query Frame = -2
Query:  149 PLQPYTEVFGLQRFRECELIHGRWAMLATLGALTVEWLTGITWQDAGK-VELVEG-SSYLGQPLPF-SITTLIWIEVLVIGYIEFQRNSELDPEKRLYPGGKFFDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAV-QAVVTGKGPLNNWATHLSDPLHTTILDTFI 646
            PL   T     +RF+E E+ H RWAML   G L  E L    W  A +   L +G ++YLG P+P+ ++ T++ IE L I + E QR  E DPEK+ YPGG F DPLG + DP K   L+L EIK+ RLAM+AF+GF V Q+   G GPL N ATHL+DP H  I D  I
Sbjct:   70 PLGLATVPENFERFKESEIYHCRWAMLCVPGVLVPEALGLGNWVKAQEWAALPDGQATYLGNPVPWGNLPTILAIEFLAIAFAEQQRTMEKDPEKKKYPGGAF-DPLGFSKDPAKFEELKLKEIKNGRLAMLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGDIVI 238          
BLAST of CX296312 vs. ExPASy Swiss-Prot
Match: CB26_ARATH (Chlorophyll a-b binding protein CP26, chloroplastic OS=Arabidopsis thaliana GN=LHCB5 PE=2 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 6.287e-26
Identity = 69/161 (42.86%), Postives = 98/161 (60.87%), Query Frame = -2
Query:  161 RFRECELIHGRWAMLATLGALTVEWLTGI--------TWQDAGKVELVEGSS--YLGQPLPFSITTLIWIEVLVIGYIEFQR-NSELDPEKRLYPGGKFFDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAVVTGKGPLNNWATHLSDPLHTTIL 610
            +++  ELIH RWAML   G +  E L            W   G + L++G++  Y G+ +P ++   +  EV+++G  E+ R  + LD E +L+PGG F DPLGLA DPE+ A L++ EIK+ RLAM A LGF +QA VTG+GP+ N A HLSDP    +L
Sbjct:  109 KYQAFELIHARWAMLGAAGFIIPEALNKYGANCGPEAVWFKTGAL-LLDGNTLNYFGKNIPINLVLAVVAEVVLLGGAEYYRITNGLDFEDKLHPGGPF-DPLGLAKDPEQGALLKVKEIKNGRLAMFAMLGFFIQAYVTGEGPVENLAKHLSDPFGNNLL 267          
BLAST of CX296312 vs. ExPASy Swiss-Prot
Match: CB23_HORVU (Chlorophyll a-b binding protein of LHCII type III, chloroplastic OS=Hordeum vulgare GN=LHBC PE=2 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 2.389e-25
Identity = 74/160 (46.25%), Postives = 92/160 (57.50%), Query Frame = -2
Query:  176 RFRECELIHGRWAMLATLGALTVEWL---TGI-----TWQDAGKVELVEGS-SYLGQPLPF---SITTLIWIEVLVIGYIEFQRNSELD---PEKRLYPGGKFFDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAVVTGKGPLNNWATHLSDPL 610
            R R  E+IHGRWAML  LG +  E L    G+      W  AG     EG   YLG P      SI  ++  +VL++G +E  R + LD       LYPGG++FDPLGLA DP   A L++ EIK+ RLAM +  GF VQA+VTGKGPL N   HL DP+
Sbjct:   94 RNRALEVIHGRWAMLGALGCVFPEVLQKWVGVEFKEPVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAVLGFQVLLMGLVEGFRINGLDGVGEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLFDHLDDPV 253          
BLAST of CX296312 vs. ExPASy Swiss-Prot
Match: CB21_SINAL (Chlorophyll a-b binding protein 1, chloroplastic OS=Sinapis alba GN=CAB1 PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.186e-24
Identity = 74/161 (45.96%), Postives = 94/161 (58.39%), Query Frame = -2
Query:  173 RFRECELIHGRWAMLATLGALTVEWLT--GI-----TWQDAGKVELVEGS-SYLGQPLPFSITTLIWI---EVLVIGYIEFQRNSELDP----EKRLYPGGKFFDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAVVTGKGPLNNWATHLSDPLH 610
            R RE E+IH RWAML  LG +  E L   G+      W  AG     EG   YLG P      +++ I   +V+++G +E  R +   P    E  LYPGG F DPLGLA DPE  A L++ EIK+ RLAM +  GF VQA+VTGKGPL N A HL+DP++
Sbjct:   93 RNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRVAGEGPLGEAEDLLYPGGSF-DPLGLATDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVN 252          
BLAST of CX296312 vs. ExPASy Swiss-Prot
Match: CB2_DUNTE (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Dunaliella tertiolecta PE=2 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 1.549e-24
Identity = 75/161 (46.58%), Postives = 95/161 (59.01%), Query Frame = -2
Query:  179 RFRECELIHGRWAMLATLGALTVEWLT---GI-----TWQDAGKVELVEGS-SYLGQPLPF---SITTLIWIEVLVIGYIEFQR---NSE--LDPEKRLYPGGKFFDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAVVTGKGPLNNWATHLSDP 610
            R+RE ELIH RWA+L  LG LT E L+   G+      W  AG     +G  +YLG        SI   + ++V+++G  E  R    SE  LD    LYPGG F DPLGLA DP+  A L++ EIK+ RLAM + LGF VQA+VTGKGP+ N   HL+DP
Sbjct:   78 RYREIELIHARWALLGALGILTPELLSQYAGVQFGEPVWFKAGAQIFADGGLNYLGNESLIHAQSIIATLAVQVVLMGLAEAYRANGGSEGFLDDLDTLYPGGPF-DPLGLADDPDTFAELKVKEIKNGRLAMFSCLGFFVQAIVTGKGPVQNLTDHLADP 237          
The following BLAST results are available for this feature:
BLAST of CX296312 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 83
Match NameE-valueIdentityDescription
CB4A_ARATH9.853e-8890.59Chlorophyll a-b binding protein CP29.1, chloroplas... [more]
CB4B_ARATH2.867e-8790.00Chlorophyll a-b binding protein CP29.2, chloroplas... [more]
CB4C_ARATH3.521e-6982.58Chlorophyll a-b binding protein CP29.3, chloroplas... [more]
CB29_CHLRE3.426e-4866.00Chlorophyll a-b binding protein CP29 OS=Chlamydomo... [more]
CB11_SOLLC2.914e-3147.50Chlorophyll a-b binding protein 6A, chloroplastic ... [more]
CB121_HORVU1.107e-3047.65Chlorophyll a-b binding protein 1B-21, chloroplast... [more]
CB26_ARATH6.287e-2642.86Chlorophyll a-b binding protein CP26, chloroplasti... [more]
CB23_HORVU2.389e-2546.25Chlorophyll a-b binding protein of LHCII type III,... [more]
CB21_SINAL1.186e-2445.96Chlorophyll a-b binding protein 1, chloroplastic O... [more]
CB2_DUNTE1.549e-2446.58Chlorophyll a-b binding protein of LHCII type I, c... [more]

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Properties
Property NameValue
Genbank descriptionC05138F10SK FerrChloL1 Citrus clementina cDNA clone C05138F10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296312 ID=CX296312; Name=CX296312; organism=Citrus clementina; type=EST; length=659bp
AGATGACATGACTTCAAAATATGAAGCCATAGCATTCCCCTTAAGCTGTC
AAATGTTATAATTCTTTTTACAAGATAGGCGCATATAATAATAATAATAA
CAATAGTGCCAACTGCCAAGTACTGGAGGCTACACCAGAAATCTAAGAGA
TGAAGGTGTCAAGAATGGTTGTGTGAAGAGGATCGCTCAAGTGGGTAGCC
CAGTTGTTGAGAGGGCCTTTTCCGGTGACAACAGCTTGGACAGCGAAGCC
AAGGAATGCAACCATGGCAAGGCGGGCGTGCTTGATCTCTGCCAATTGAA
GGGTGGCTTTCTTTTCCGGGTCAGCGGCCAAGCCCAGAGGATCAAAAAAC
TTTCCTCCCGGGTAGAGTCTCTTCTCCGGGTCAAGCTCTGAGTTTCTTTG
GAACTCAATGTAGCCAATTACCAAAACCTCAATCCATATCAACGTTGTTA
TTGAGAATGGAAGTGGTTGCCCCAGGTATGATGATCCTTCAACTAACTCT
ACCTTGCCAGCGTCTTGCCAAGTAATCCCAGTGAGCCACTCAACAGTGAG
GGCACCGAGAGTAGCCAACATGGCCCAACGTCCATGAATGAGCTCACACT
CACGGAACCTCTGCAGACCAAAGACTTCAGTGTACGGCTGAAGCGGCGTG
GACTGCATG
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