CX296315
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CX296315 vs. ExPASy Swiss-Prot
Match: RK5_ARATH (50S ribosomal protein L5, chloroplastic OS=Arabidopsis thaliana GN=RPL5 PE=1 SV=1) HSP 1 Score: 278.1 bits (710), Expect = 2.452e-74 Identity = 141/190 (74.21%), Postives = 160/190 (84.21%), Query Frame = 3 Query: 48 HGRFPALSSSSYVRPTYPNPINVNGVVSVKAAAGGIVLVEKSEAEKTGRLKTTYLEKIVPLLREEFSYTNIHQVPKIEKIVVNCGIGDAAQNAKGLEAAMNDLALITGQRPVKTRARNSIATFKIREGEPLGIAVTLRGNMMYSFLDRLINLGLPRTRDFQGVNPNSFDGHGNYSIGVKEQSVFPEIRYD 617 HGRF L++ S R P NV VK +A G VLVEKSEAEKT RLKT YLE+I+P L+EEF Y NIHQVPK++KIVVNCGIGDAAQN KGLEAAM D+ALITGQ+P+KTRAR SIATFKIRE +PLGIAVTLRG++MYSFLDRLINL LPRTRDFQGV+P+SFDG+GNYSIGVK+Q VFPEIR+D Sbjct: 15 HGRFSPLAAPSSARMLSPPLRNV-----VKVSASGTVLVEKSEAEKTQRLKTAYLERIIPALKEEFKYVNIHQVPKVQKIVVNCGIGDAAQNDKGLEAAMKDIALITGQKPIKTRARASIATFKIREDQPLGIAVTLRGDVMYSFLDRLINLALPRTRDFQGVSPSSFDGNGNYSIGVKDQGVFPEIRFD 199
BLAST of CX296315 vs. ExPASy Swiss-Prot
Match: RK5_SPIOL (50S ribosomal protein L5, chloroplastic OS=Spinacia oleracea GN=RPL5 PE=1 SV=2) HSP 1 Score: 253.447 bits (646), Expect = 6.468e-67 Identity = 123/157 (78.34%), Postives = 142/157 (90.45%), Query Frame = 3 Query: 141 AAGGIVLVEKSEAEKTGRLKTTYLEKIVPLLREEFSYTNIHQVPKIEKIVVNCGIGDAAQNAKGLEAAMNDLALITGQRPVKTRARNSIATFKIREGEPLGIAVTLRGNMMYSFLDRLINLGLPRTRDFQGVNPNSFDGHGNYSIGVKEQSVFPEIR 611 AAG V V+K+EAE RLKT Y+EK+VPLL+EEFSY+NI +VPK+ KIVVNCGIGDA+QNAKGL+AA+N+LALITGQRPVKT+A+ SIA FK+REG LGIAVTLRGN+MYSFLDRLINL LPRTRDFQGVNPNSFDGHGNYS+G +EQSVFPEI+ Sbjct: 1 AAGTAVFVDKAEAETINRLKTNYIEKMVPLLKEEFSYSNILEVPKVVKIVVNCGIGDASQNAKGLDAAINELALITGQRPVKTKAKTSIAGFKVREGMTLGIAVTLRGNLMYSFLDRLINLALPRTRDFQGVNPNSFDGHGNYSVGFREQSVFPEIK 157
BLAST of CX296315 vs. ExPASy Swiss-Prot
Match: RK5_ORYSJ (50S ribosomal protein L5, chloroplastic OS=Oryza sativa subsp. japonica GN=RPL5 PE=2 SV=2) HSP 1 Score: 233.417 bits (594), Expect = 6.926e-61 Identity = 109/156 (69.87%), Postives = 135/156 (86.54%), Query Frame = 3 Query: 150 GIVLVEKSEAEKTGRLKTTYLEKIVPLLREEFSYTNIHQVPKIEKIVVNCGIGDAAQNAKGLEAAMNDLALITGQRPVKTRARNSIATFKIREGEPLGIAVTLRGNMMYSFLDRLINLGLPRTRDFQGVNPNSFDGHGNYSIGVKEQSVFPEIRYD 617 GIVLV+ +EA+K RLK Y +K+VPL+ EEF YTN+HQVPK+EKIVVNCG+G A N+KGLE+AM DLA+ITGQ PVKT+A+ S+A+FKIREG +GIAVTLRG +M++FLDRLINLGLPRT DF GVNPNSFDGHGN++IG+++Q VFPEI Y+ Sbjct: 63 GIVLVDPTEAQKVHRLKAVYDQKVVPLITEEFGYTNVHQVPKVEKIVVNCGLGAEAGNSKGLESAMKDLAMITGQWPVKTKAKKSVASFKIREGNTIGIAVTLRGRVMFNFLDRLINLGLPRTMDFLGVNPNSFDGHGNFTIGLRDQGVFPEIPYE 218
BLAST of CX296315 vs. ExPASy Swiss-Prot
Match: RL5_SYNY3 (50S ribosomal protein L5 OS=Synechocystis sp. (strain PCC 6803) GN=rplE PE=3 SV=2) HSP 1 Score: 202.601 bits (514), Expect = 1.309e-51 Identity = 95/144 (65.97%), Postives = 118/144 (81.94%), Query Frame = 3 Query: 186 TGRLKTTYLEKIVPLLREEFSYTNIHQVPKIEKIVVNCGIGDAAQNAKGLEAAMNDLALITGQRPVKTRARNSIATFKIREGEPLGIAVTLRGNMMYSFLDRLINLGLPRTRDFQGVNPNSFDGHGNYSIGVKEQSVFPEIRYD 617 T RLKT Y E I+P L+EEF Y NIHQVPK+ K+ VN G+G+A+QNAK LE+++ +LA ITGQ+PV TRAR +IA FKIREG P+G+ VTLR MY+FLDRLINL LPR RDF+G++PNSFDG GNYS+G++EQ +FPEI YD Sbjct: 2 TQRLKTLYQETILPKLQEEFGYKNIHQVPKLTKVTVNRGLGEASQNAKALESSLTELATITGQKPVVTRARKAIAGFKIREGMPVGVMVTLRSERMYAFLDRLINLALPRIRDFRGISPNSFDGRGNYSLGIREQLIFPEIDYD 145
BLAST of CX296315 vs. ExPASy Swiss-Prot
Match: RL5_CYAP4 (50S ribosomal protein L5 OS=Cyanothece sp. (strain PCC 7425 / ATCC 29141) GN=rplE PE=3 SV=1) HSP 1 Score: 201.06 bits (510), Expect = 3.809e-51 Identity = 95/142 (66.90%), Postives = 116/142 (81.69%), Query Frame = 3 Query: 192 RLKTTYLEKIVPLLREEFSYTNIHQVPKIEKIVVNCGIGDAAQNAKGLEAAMNDLALITGQRPVKTRARNSIATFKIREGEPLGIAVTLRGNMMYSFLDRLINLGLPRTRDFQGVNPNSFDGHGNYSIGVKEQSVFPEIRYD 617 RLKT YLE VP L E+F Y NIHQVPK+ KI +N G+G+AAQNAK LEA++N++ALI GQ+PV TRA+ +IA FKIR+G P+GI VTLR + MY+F DRLINL LPR RDF+GVNP SFDG GNYS+G++EQ +FPEI YD Sbjct: 4 RLKTYYLENAVPKLMEQFKYKNIHQVPKLVKITINRGLGEAAQNAKSLEASLNEIALIAGQKPVVTRAKKAIAGFKIRQGMPVGIMVTLRSDRMYAFFDRLINLALPRIRDFRGVNPKSFDGRGNYSLGLREQLIFPEISYD 145
BLAST of CX296315 vs. ExPASy Swiss-Prot
Match: RL5_MICAN (50S ribosomal protein L5 OS=Microcystis aeruginosa (strain NIES-843) GN=rplE PE=3 SV=1) HSP 1 Score: 200.675 bits (509), Expect = 4.975e-51 Identity = 94/142 (66.20%), Postives = 119/142 (83.80%), Query Frame = 3 Query: 192 RLKTTYLEKIVPLLREEFSYTNIHQVPKIEKIVVNCGIGDAAQNAKGLEAAMNDLALITGQRPVKTRARNSIATFKIREGEPLGIAVTLRGNMMYSFLDRLINLGLPRTRDFQGVNPNSFDGHGNYSIGVKEQSVFPEIRYD 617 +LKTTY E IVP L+E+F YTNIHQVPK+ KI VN G+G+A+QNAK LE++ +L+ ITGQ+PV TRA+ +IA FKIREG P+G+ VTLRG+ MY+FLDRLINL LPR RDF+G++ NSFDG GNYS+G++EQ +FPEI YD Sbjct: 4 KLKTTYQETIVPKLKEQFGYTNIHQVPKVIKITVNRGLGEASQNAKALESSKAELSTITGQQPVVTRAKKAIAGFKIREGMPVGVMVTLRGDRMYAFLDRLINLALPRIRDFRGISGNSFDGRGNYSLGIREQLIFPEIEYD 145
BLAST of CX296315 vs. ExPASy Swiss-Prot
Match: RL5_CYAP7 (50S ribosomal protein L5 OS=Cyanothece sp. (strain PCC 7424) GN=rplE PE=3 SV=1) HSP 1 Score: 199.519 bits (506), Expect = 1.108e-50 Identity = 94/144 (65.28%), Postives = 119/144 (82.64%), Query Frame = 3 Query: 186 TGRLKTTYLEKIVPLLREEFSYTNIHQVPKIEKIVVNCGIGDAAQNAKGLEAAMNDLALITGQRPVKTRARNSIATFKIREGEPLGIAVTLRGNMMYSFLDRLINLGLPRTRDFQGVNPNSFDGHGNYSIGVKEQSVFPEIRYD 617 T RLKT Y E IVP L+E+F+YTNIHQVPK+ K+ VN G+GDA+QNAK LE+++ +LA ITGQ+PV TRAR +IA FKIR+G P+G+ VTLR MY+FLDRLI+L LPR RDF+G++ NSFDG GNYS+G++EQ +FPEI YD Sbjct: 2 TQRLKTVYYETIVPKLKEQFNYTNIHQVPKVIKVTVNRGLGDASQNAKALESSIAELATITGQKPVVTRARKAIAGFKIRKGMPVGVMVTLRSERMYAFLDRLISLALPRIRDFRGISGNSFDGRGNYSLGIREQLIFPEIDYD 145
BLAST of CX296315 vs. ExPASy Swiss-Prot
Match: RL5_ANASP (50S ribosomal protein L5 OS=Anabaena sp. (strain PCC 7120) GN=rplE PE=3 SV=1) HSP 1 Score: 198.749 bits (504), Expect = 1.890e-50 Identity = 93/144 (64.58%), Postives = 117/144 (81.25%), Query Frame = 3 Query: 186 TGRLKTTYLEKIVPLLREEFSYTNIHQVPKIEKIVVNCGIGDAAQNAKGLEAAMNDLALITGQRPVKTRARNSIATFKIREGEPLGIAVTLRGNMMYSFLDRLINLGLPRTRDFQGVNPNSFDGHGNYSIGVKEQSVFPEIRYD 617 T RLKT Y E IVP L ++F YTN+HQVPK+ KI VN G+G+AAQNAK LEA++ ++A ITGQ+PV TRA+ +IA FKIR+G P+GI VTLRG MY+F DRLI+L LPR RDF+G++P SFDG GNY++GV+EQ +FPEI YD Sbjct: 3 TTRLKTLYQETIVPKLTQQFQYTNVHQVPKLVKITVNRGLGEAAQNAKSLEASLTEIATITGQKPVVTRAKKAIAGFKIRQGMPVGIMVTLRGERMYAFFDRLISLSLPRIRDFRGISPKSFDGRGNYTLGVREQLIFPEIEYD 146
BLAST of CX296315 vs. ExPASy Swiss-Prot
Match: RL5_ANAVT (50S ribosomal protein L5 OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=rplE PE=3 SV=1) HSP 1 Score: 198.364 bits (503), Expect = 2.469e-50 Identity = 92/144 (63.89%), Postives = 117/144 (81.25%), Query Frame = 3 Query: 186 TGRLKTTYLEKIVPLLREEFSYTNIHQVPKIEKIVVNCGIGDAAQNAKGLEAAMNDLALITGQRPVKTRARNSIATFKIREGEPLGIAVTLRGNMMYSFLDRLINLGLPRTRDFQGVNPNSFDGHGNYSIGVKEQSVFPEIRYD 617 T RLKT Y E I+P L ++F YTN+HQVPK+ KI VN G+G+AAQNAK LEA++ ++A ITGQ+PV TRA+ +IA FKIR+G P+GI VTLRG MY+F DRLI+L LPR RDF+G++P SFDG GNY++GV+EQ +FPEI YD Sbjct: 3 TTRLKTLYQETIIPKLTQQFQYTNVHQVPKLVKITVNRGLGEAAQNAKSLEASLTEIATITGQKPVVTRAKKAIAGFKIRQGMPVGIMVTLRGERMYAFFDRLISLSLPRIRDFRGISPKSFDGRGNYTLGVREQLIFPEIEYD 146
BLAST of CX296315 vs. ExPASy Swiss-Prot
Match: RK5_CHLAT (50S ribosomal protein L5, chloroplastic OS=Chlorokybus atmophyticus GN=rpl5 PE=3 SV=1) HSP 1 Score: 197.593 bits (501), Expect = 4.212e-50 Identity = 88/142 (61.97%), Postives = 117/142 (82.39%), Query Frame = 3 Query: 192 RLKTTYLEKIVPLLREEFSYTNIHQVPKIEKIVVNCGIGDAAQNAKGLEAAMNDLALITGQRPVKTRARNSIATFKIREGEPLGIAVTLRGNMMYSFLDRLINLGLPRTRDFQGVNPNSFDGHGNYSIGVKEQSVFPEIRYD 617 RLK YLEK P LRE F Y N+HQ+P+IEKI++NCG+G+A+QNAK L++AM +L++I GQ+ V TRA+ +IA FK+R+ P+GI++TLRGN MY+FLDRLINL LPR +DFQGV+ FDGHGNY++G+KEQ +FPEI +D Sbjct: 4 RLKAIYLEKAAPRLREMFEYKNVHQIPRIEKIIINCGLGEASQNAKSLDSAMKELSIIAGQKGVITRAKKAIANFKLRKDMPVGISITLRGNSMYAFLDRLINLALPRIKDFQGVSSKGFDGHGNYNLGLKEQLMFPEINFD 145 The following BLAST results are available for this feature:
BLAST of CX296315 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >CX296315 ID=CX296315; Name=CX296315; organism=Citrus clementina; type=EST; length=619bpback to top |