CX296469

Overview
NameCX296469
Unique NameCX296469
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length690
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CX296469 vs. ExPASy Swiss-Prot
Match: TRIP4_MOUSE (Activating signal cointegrator 1 OS=Mus musculus GN=Trip4 PE=1 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 7.872e-22
Identity = 55/146 (37.67%), Postives = 81/146 (55.48%), Query Frame = 3 
Query:  120 CLTMHQPWASLLVYGIKRVEGRSWPAPLRGRLWIHAASKIPEEATIKAMEEFYREIYAVNGITDLQFPQHYPVSXXXXXXXXXXXXXXXXXASWEVVPEGVRLEAQTDFCWLCENPQKLLVPFEMRGYQGVYNLEKKVYETAVRGL 557
            CL+MHQPWASLLV GIKRVEGRSW  P RGRLWI A  K P    +  ++  YR +       D++FP  YP                      E  P+ +  E+ + F ++C+NPQ+++V F ++G   ++ L+ K+++ A +GL
Sbjct:  436 CLSMHQPWASLLVRGIKRVEGRSWYTPHRGRLWIAATGKRPSPQEVSELQATYRLLRG----KDVEFPNDYPSGCLLGCVDLIDCLSQKQFQ--EQFPD-ISQESDSSFVFICKNPQEMVVKFPIKGNPKIWKLDSKIHQGAKKGL 574
[Close]
BLAST of CX296469 vs. ExPASy Swiss-Prot
Match: TRIP4_HUMAN (Activating signal cointegrator 1 OS=Homo sapiens GN=TRIP4 PE=1 SV=4)

HSP 1 Score: 102.449 bits (254), Expect = 2.290e-21
Identity = 54/146 (36.99%), Postives = 82/146 (56.16%), Query Frame = 3 
Query:  120 CLTMHQPWASLLVYGIKRVEGRSWPAPLRGRLWIHAASKIPEEATIKAMEEFYREIYAVNGITDLQFPQHYPVSXXXXXXXXXXXXXXXXXASWEVVPEGVRLEAQTDFCWLCENPQKLLVPFEMRGYQGVYNLEKKVYETAVRGL 557
            CL++HQPWASLLV GIKRVEGRSW  P RGRLWI A +K P    +  ++  YR +       D++FP  YP                      E  P+ +  E+ + F ++C+NPQ+++V F ++G   ++ L+ K+++ A +GL
Sbjct:  436 CLSVHQPWASLLVRGIKRVEGRSWYTPHRGRLWIAATAKKPSPQEVSELQATYRLLRG----KDVEFPNDYPSGCLLGCVDLIDCLSQKQFK--EQFPD-ISQESDSPFVFICKNPQEMVVKFPIKGNPKIWKLDSKIHQGAKKGL 574
The following BLAST results are available for this feature:
BLAST of CX296469 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
TRIP4_MOUSE7.872e-2237.67Activating signal cointegrator 1 OS=Mus musculus G... [more]
TRIP4_HUMAN2.290e-2136.99Activating signal cointegrator 1 OS=Homo sapiens G... [more]
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Properties
Property NameValue
Genbank descriptionC05141E01SK FerrChloL1 Citrus clementina cDNA clone C05141E01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296469 ID=CX296469; Name=CX296469; organism=Citrus clementina; type=EST; length=690bp
GCCTCGTGCCGAATTCGGCACGAGGAAGTAGTGTGAAATTTTCCGAGTGA
TTCTCCCGGGAACCAAACACAGAGAAAGAGATGAGAGGAGTAAGAAAGCA
AGGGAACTACACGAACCCGTGTTTGACGATGCATCAACCATGGGCTTCAC
TCCTCGTTTACGGGATCAAGCGCGTTGAAGGCAGGTCTTGGCCTGCTCCT
CTTCGAGGCCGTCTATGGATTCATGCTGCTAGCAAGATTCCCGAAGAAGC
TACCATCAAAGCAATGGAAGAATTTTACAGGGAAATTTATGCAGTCAATG
GGATCACTGATCTTCAGTTTCCCCAACATTATCCAGTTTCAAGACTTTTA
GGGTGTGTTGAAGTAGTCGGCTGCGTTCGCTGCGAAGAACTAGCAAGCTG
GGAAGTGGTACCTGAAGGGGTGAGGTTAGAAGCACAAACAGATTTTTGCT
GGCTTTGTGAAAATCCTCAAAAACTATTAGTTCCATTTGAAATGCGAGGG
TATCAGGGTGTTTATAACTTGGAAAAGAAGGTGTATGAAACTGCTGTTAG
GGGTCTTACCTCTGTTAAAGGTCCACTGCCTGTGAAGTTTCCACTTCCAG
ATGCACAAGATCCTTTTTCTTTGAAGCCAGGATCTATGTCTACAAATTTC
CCCGAAAAATAATCACTGCAGTGGAGAATCATCCACTCTC
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