CX296473

Overview
NameCX296473
Unique NameCX296473
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length758
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CX296473 vs. ExPASy Swiss-Prot
Match: GME1_ORYSJ (GDP-mannose 3,5-epimerase 1 OS=Oryza sativa subsp. japonica GN=GME-1 PE=1 SV=1)

HSP 1 Score: 237.269 bits (604), Expect = 7.058e-62
Identity = 115/128 (89.84%), Postives = 122/128 (95.31%), Query Frame = -1 
Query:  375 EMCEGVLRLTKSDFREPVTIGSDEMVSMNEMAEIVLSFEDKKLPIHHIPGPEGVRGRNSDNTLIKEKLGWAPSMKLKDGLRITYFWIKEQIEKEKTQGIDLSVYGSSKVVGTQAPVQLGSLRAADGKE 758
            E  EGVLRLTKSDFREPV IGSDEMVSMNEMAEI+LSFED++LPIHHIPGPEGVRGRNSDNTLIKEKLGWAP+MKLKDGLR TYFWIKEQIEKEKTQG+D++ YGSSKVV TQAPVQLGSLRAADGKE
Sbjct:  251 ECVEGVLRLTKSDFREPVNIGSDEMVSMNEMAEIILSFEDRELPIHHIPGPEGVRGRNSDNTLIKEKLGWAPTMKLKDGLRFTYFWIKEQIEKEKTQGVDIAGYGSSKVVSTQAPVQLGSLRAADGKE 378
[Close]
BLAST of CX296473 vs. ExPASy Swiss-Prot
Match: GME1_ORYSI (GDP-mannose 3,5-epimerase 1 OS=Oryza sativa subsp. indica GN=OsI_032456 PE=2 SV=1)

HSP 1 Score: 237.269 bits (604), Expect = 7.058e-62
Identity = 115/128 (89.84%), Postives = 122/128 (95.31%), Query Frame = -1 
Query:  375 EMCEGVLRLTKSDFREPVTIGSDEMVSMNEMAEIVLSFEDKKLPIHHIPGPEGVRGRNSDNTLIKEKLGWAPSMKLKDGLRITYFWIKEQIEKEKTQGIDLSVYGSSKVVGTQAPVQLGSLRAADGKE 758
            E  EGVLRLTKSDFREPV IGSDEMVSMNEMAEI+LSFED++LPIHHIPGPEGVRGRNSDNTLIKEKLGWAP+MKLKDGLR TYFWIKEQIEKEKTQG+D++ YGSSKVV TQAPVQLGSLRAADGKE
Sbjct:  251 ECVEGVLRLTKSDFREPVNIGSDEMVSMNEMAEIILSFEDRELPIHHIPGPEGVRGRNSDNTLIKEKLGWAPTMKLKDGLRFTYFWIKEQIEKEKTQGVDIAGYGSSKVVSTQAPVQLGSLRAADGKE 378
[Close]
BLAST of CX296473 vs. ExPASy Swiss-Prot
Match: GME2_ORYSJ (GDP-mannose 3,5-epimerase 2 OS=Oryza sativa subsp. japonica GN=GME-2 PE=2 SV=2)

HSP 1 Score: 235.728 bits (600), Expect = 2.054e-61
Identity = 115/128 (89.84%), Postives = 122/128 (95.31%), Query Frame = -1 
Query:  375 EMCEGVLRLTKSDFREPVTIGSDEMVSMNEMAEIVLSFEDKKLPIHHIPGPEGVRGRNSDNTLIKEKLGWAPSMKLKDGLRITYFWIKEQIEKEKTQGIDLSVYGSSKVVGTQAPVQLGSLRAADGKE 758
            E  EGVLRLTKSDFREPV IGSDEMVSMNEMAEIVLSFE+K+LPIHHIPGPEGVRGRNSDNTLIKEKLGWAP+M+LKDGLRITYFWIKEQ+EKEK +G+DLS YGSSKVV TQAPVQLGSLRAADGKE
Sbjct:  244 ECVEGVLRLTKSDFREPVNIGSDEMVSMNEMAEIVLSFENKQLPIHHIPGPEGVRGRNSDNTLIKEKLGWAPTMRLKDGLRITYFWIKEQLEKEKAEGVDLSAYGSSKVVQTQAPVQLGSLRAADGKE 371
[Close]
BLAST of CX296473 vs. ExPASy Swiss-Prot
Match: GME_ARATH (GDP-mannose 3,5-epimerase OS=Arabidopsis thaliana GN=At5g28840 PE=1 SV=1)

HSP 1 Score: 233.802 bits (595), Expect = 7.803e-61
Identity = 114/128 (89.06%), Postives = 122/128 (95.31%), Query Frame = -1 
Query:  375 EMCEGVLRLTKSDFREPVTIGSDEMVSMNEMAEIVLSFEDKKLPIHHIPGPEGVRGRNSDNTLIKEKLGWAPSMKLKDGLRITYFWIKEQIEKEKTQGIDLSVYGSSKVVGTQAPVQLGSLRAADGKE 758
            E  EGVLRLTKSDFREPV IGSDEMVSMNEMAE+VLSFE+KKLPIHHIPGPEGVRGRNSDN LIKEKLGWAP+M+LK+GLRITYFWIKEQIEKEK +G D+S+YGSSKVVGTQAPVQLGSLRAADGKE
Sbjct:  250 ECVEGVLRLTKSDFREPVNIGSDEMVSMNEMAEMVLSFEEKKLPIHHIPGPEGVRGRNSDNNLIKEKLGWAPNMRLKEGLRITYFWIKEQIEKEKAKGSDVSLYGSSKVVGTQAPVQLGSLRAADGKE 377
The following BLAST results are available for this feature:
BLAST of CX296473 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
GME1_ORYSJ7.058e-6289.84GDP-mannose 3,5-epimerase 1 OS=Oryza sativa subsp.... [more]
GME1_ORYSI7.058e-6289.84GDP-mannose 3,5-epimerase 1 OS=Oryza sativa subsp.... [more]
GME2_ORYSJ2.054e-6189.84GDP-mannose 3,5-epimerase 2 OS=Oryza sativa subsp.... [more]
GME_ARATH7.803e-6189.06GDP-mannose 3,5-epimerase OS=Arabidopsis thaliana ... [more]
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Properties
Property NameValue
Genbank descriptionC05141E05SK FerrChloL1 Citrus clementina cDNA clone C05141E05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296473 ID=CX296473; Name=CX296473; organism=Citrus clementina; type=EST; length=758bp
ATTCGGCCGAGGCCTGGTGCCGAATTCGGCACGAGGTAAAATTGAAATTA
TTTTTATTTCAAACCGACAAATAATACACAAAAGGGAAATGCTCTTATAT
CATCCTACTGTAGCAGCCTCCACTGAAAAGCTAGGTAAAATACAATGAGC
GCAAAAGCTTCTCCCAGACACTTCAGCATAGTACAGACTAGAAACCAATT
TGAAGAATGGTCCAAACTCAAAGCGTTCCTAAATCTCCACACAAGTAAAT
TTTTAACTCATAATGATAGCTTTATATCATAAAGACAACATGGAATTATG
ATTGCTAGAAATAGCATAATAAAACATGGCTTTTCTGAGGGCAACTACGA
GAGATGTATGGCTCAACCACTTCATTCTTTGCCATCAGCAGCACGAAGTG
AGCCTAACTGAACTGGTGCTTGAGTTCCTACCACCTTCGATGATCCATAA
ACAGATAGGTCAATACCTTGAGTCTTCTCCTTCTCAATCTGTTCCTTGAT
CCAGAAATACGTAATTCTCAGCCCATCCTTCAACTTCATGGATGGTGCCC
AACCAAGCTTCTCTTTGATCAGTGTGTTGTCTGAATTACGACCACGGACA
CCCTCAGGGCCAGGAATGTGGTGGATAGGTAGCTTCTTGTCCTCAAAGCT
AAGAACAATCTCAGCCATCTCGTTCATGCTAACCATCTCATCACTACCAA
TGGTCACTGGCTCACGGAAGTCTGACTTCGTCAATCTGAGCACACCTTCA
CACATTTC
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