CX296512

Overview
NameCX296512
Unique NameCX296512
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length557
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig7340 contig Ccv1_Contig7340:1771..2328. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX296512 vs. ExPASy Swiss-Prot
Match: FTSH2_ORYSJ (Cell division protease ftsH homolog 2, chloroplastic OS=Oryza sativa subsp. japonica GN=FTSH2 PE=3 SV=1)

HSP 1 Score: 207.223 bits (526), Expect = 4.322e-53
Identity = 108/119 (90.76%), Postives = 113/119 (94.96%), Query Frame = 2
Query:   38 TGAAGDLQQITGLAKQMVTTFGMSEIGPWSLMD-GSQSGDVIMRMMARNSMSEKLAEDIDAAVKRLSDRAYEIALSQIRNNREAIDKIVEVLLEKETMSGDEFRAILSEFVEIPAENRV 391
            TGAAGDLQQITGLAKQMV TFGMS+IGPWSLMD G+QSGDVIMRMMARNSMSEKLAEDID AVKRLSD AYEIALSQIR+NREA+DKIVEVLLEKET+SGDEFRAILSEF EIP ENRV
Sbjct:  548 TGAAGDLQQITGLAKQMVVTFGMSDIGPWSLMDSGAQSGDVIMRMMARNSMSEKLAEDIDTAVKRLSDEAYEIALSQIRSNREAMDKIVEVLLEKETLSGDEFRAILSEFTEIPVENRV 666          
BLAST of CX296512 vs. ExPASy Swiss-Prot
Match: FTSH8_ARATH (Cell division protease ftsH homolog 8, chloroplastic OS=Arabidopsis thaliana GN=FTSH8 PE=1 SV=1)

HSP 1 Score: 203.756 bits (517), Expect = 4.779e-52
Identity = 104/118 (88.14%), Postives = 108/118 (91.53%), Query Frame = 2
Query:   38 TGAAGDLQQITGLAKQMVTTFGMSEIGPWSLMDGSQSGDVIMRMMARNSMSEKLAEDIDAAVKRLSDRAYEIALSQIRNNREAIDKIVEVLLEKETMSGDEFRAILSEFVEIPAENRV 391
            TGA  DLQQITGLAKQMVTTFGMSEIGPWSLMD S+  DVIMRMMARNSMSEKLA DID AVK LSD+AYEIALSQIRNNREA+DKIVE+LLEKETMSGDEFRAILSEF EIP ENRV
Sbjct:  554 TGAVSDLQQITGLAKQMVTTFGMSEIGPWSLMDSSEQSDVIMRMMARNSMSEKLANDIDTAVKTLSDKAYEIALSQIRNNREAMDKIVEILLEKETMSGDEFRAILSEFTEIPPENRV 671          
BLAST of CX296512 vs. ExPASy Swiss-Prot
Match: FTSH2_ARATH (Cell division protease ftsH homolog 2, chloroplastic OS=Arabidopsis thaliana GN=FTSH2 PE=1 SV=1)

HSP 1 Score: 198.364 bits (503), Expect = 2.008e-50
Identity = 100/118 (84.75%), Postives = 108/118 (91.53%), Query Frame = 2
Query:   38 TGAAGDLQQITGLAKQMVTTFGMSEIGPWSLMDGSQSGDVIMRMMARNSMSEKLAEDIDAAVKRLSDRAYEIALSQIRNNREAIDKIVEVLLEKETMSGDEFRAILSEFVEIPAENRV 391
            TGA GDLQQITGLA+QMVTTFGMS+IGPWSLMD S   DVIMRMMARNSMSEKLAEDID+AVK+LSD AYEIALS I+NNREA+DK+VEVLLEKET+ GDEFRAILSEF EIP ENRV
Sbjct:  561 TGAVGDLQQITGLARQMVTTFGMSDIGPWSLMDSSAQSDVIMRMMARNSMSEKLAEDIDSAVKKLSDSAYEIALSHIKNNREAMDKLVEVLLEKETIGGDEFRAILSEFTEIPPENRV 678          
BLAST of CX296512 vs. ExPASy Swiss-Prot
Match: FTSH6_ARATH (Cell division protease ftsH homolog 6, chloroplastic OS=Arabidopsis thaliana GN=FTSH6 PE=2 SV=1)

HSP 1 Score: 159.844 bits (403), Expect = 7.914e-39
Identity = 78/114 (68.42%), Postives = 98/114 (85.96%), Query Frame = 2
Query:   38 TGAAGDLQQITGLAKQMVTTFGMSEIGPWSLMDGS-QSGDVIMRMMARNSMSEKLAEDIDAAVKRLSDRAYEIALSQIRNNREAIDKIVEVLLEKETMSGDEFRAILSEFVEIP 376
            TGAAGDLQQ+T +A+QMVT FGMSEIGPW+L D + +  DV++RM+ARNSMSEKLAEDID+ VK++   AYE+A   +RNNREAIDK+V+VLLEKET++GDEFRAILSE+ + P
Sbjct:  558 TGAAGDLQQVTEIARQMVTMFGMSEIGPWALTDPAVKQNDVVLRMLARNSMSEKLAEDIDSCVKKIIGDAYEVAKKHVRNNREAIDKLVDVLLEKETLTGDEFRAILSEYTDQP 671          
BLAST of CX296512 vs. ExPASy Swiss-Prot
Match: FTSH6_ORYSJ (Cell division protease ftsH homolog 6, chloroplastic OS=Oryza sativa subsp. japonica GN=FTSH6 PE=3 SV=1)

HSP 1 Score: 155.606 bits (392), Expect = 1.492e-37
Identity = 76/118 (64.41%), Postives = 99/118 (83.90%), Query Frame = 2
Query:   38 TGAAGDLQQITGLAKQMVTTFGMSEIGPWSLMD-GSQSGDVIMRMMARNSMSEKLAEDIDAAVKRLSDRAYEIALSQIRNNREAIDKIVEVLLEKETMSGDEFRAILSEFVEIPAENR 388
            TGAAGDLQQ+T +A++MVT FGMSEIGPW+L +  +Q GDV++RM+AR+SMSE+LA DIDAAV+ + D AYE+A + +R NR AID++V+VL+EKET+ GDEFRAILSE V+I  E R
Sbjct:  557 TGAAGDLQQVTRVARRMVTAFGMSEIGPWALAEPAAQGGDVVLRMLARSSMSERLAADIDAAVRTIVDEAYEVAKAHVRRNRAAIDQLVDVLMEKETLGGDEFRAILSEHVDIGKERR 674          
BLAST of CX296512 vs. ExPASy Swiss-Prot
Match: FTSH1_SYNY3 (Cell division protease ftsH homolog 1 OS=Synechocystis sp. (strain PCC 6803) GN=slr0228 PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 1.227e-23
Identity = 53/120 (44.17%), Postives = 88/120 (73.33%), Query Frame = 2
Query:   38 TGAAGDLQQITGLAKQMVTTFGMSEIGPWSLMDGSQSGDVIMR--MMARNSMSEKLAEDIDAAVKRLSDRAYEIALSQIRNNREAIDKIVEVLLEKETMSGDEFRAILSEFVEIPAENRV 391
            TGA GDLQQ+T +A+QMVT FGMS +GP SL   S  G+V +   +M R+  SE++A  IDA V++L+++ +++A   ++  RE +D++V++L+EKET+ G+EFR I++E+ E+P + ++
Sbjct:  506 TGAGGDLQQVTEMARQMVTRFGMSNLGPISLE--SSGGEVFLGGGLMNRSEYSEEVATRIDAQVRQLAEQGHQMARKIVQEQREVVDRLVDLLIEKETIDGEEFRQIVAEYAEVPVKEQL 623          
BLAST of CX296512 vs. ExPASy Swiss-Prot
Match: FTSH_ODOSI (Cell division protease ftsH homolog OS=Odontella sinensis GN=ftsH PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 8.790e-22
Identity = 57/118 (48.31%), Postives = 79/118 (66.95%), Query Frame = 2
Query:   38 TGAAGDLQQITGLAKQMVTTFGMSEIGPWSLMDGSQSGDVIM--RMMARNSMSEKLAEDIDAAVKRLSDRAYEIALSQIRNNREAIDKIVEVLLEKETMSGDEFRAILSEFVEIPAEN 385
            TGA+ DLQQ+T LA+QMVT FGMS IGP +L D S +G V +   M + +  +E +A+ ID  V+++    YE A+  + +NR  ID IVE LL+KETM GDEFR +LS +  +P +N
Sbjct:  520 TGASSDLQQVTNLARQMVTRFGMSNIGPLALEDES-TGQVFLGGNMASGSEYAENIADRIDDEVRKIITYCYEKAIEIVLDNRVVIDLIVEKLLDKETMDGDEFRELLSTYTILPNKN 636          
BLAST of CX296512 vs. ExPASy Swiss-Prot
Match: FSTH_PORYE (Cell division protease ftsH homolog OS=Porphyra yezoensis GN=ftsH PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 3.693e-20
Identity = 54/118 (45.76%), Postives = 78/118 (66.10%), Query Frame = 2
Query:   38 TGAAGDLQQITGLAKQMVTTFGMSEIGPWSLMDGSQSGDVIMR--MMARNSMSEKLAEDIDAAVKRLSDRAYEIALSQIRNNREAIDKIVEVLLEKETMSGDEFRAILSEFVEIPAEN 385
            TGA+ DLQQ+T +A+QMVT FGMS+IGP SL   SQ GD  +   M   +  S+++A +ID  V+ +    Y  A   I +NR  ID++V++L+EKET+ G+EFR I+ E+  IP +N
Sbjct:  507 TGASNDLQQVTSMARQMVTRFGMSKIGPLSLE--SQGGDPFLGRGMGGGSEYSDEVATNIDKQVREIVSECYAQAKHIIIDNRVVIDRLVDLLIEKETIEGNEFRDIVKEYTAIPEKN 622          
BLAST of CX296512 vs. ExPASy Swiss-Prot
Match: FTSH_GUITH (Cell division protease ftsH homolog OS=Guillardia theta GN=ftsH PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 4.823e-20
Identity = 52/114 (45.61%), Postives = 73/114 (64.04%), Query Frame = 2
Query:   38 TGAAGDLQQITGLAKQMVTTFGMSEIGPWSLMDGSQSGDVIMRMMARNSM-SEKLAEDIDAAVKRLSDRAYEIALSQIRNNREAIDKIVEVLLEKETMSGDEFRAILSEFVEIP 376
            TGA  DLQQ+T +A+QMVT FGMS IGP SL +   S   + R M  +S  SE +A  ID  V+ +    +   +  I++NR  IDK+V++L+EKET+ GDEFR I+ +F  +P
Sbjct:  507 TGAGNDLQQVTSMARQMVTRFGMSNIGPLSL-ESQNSDPFLGRTMGSSSQYSEDIASRIDMQVRAIIQHCHTETVQIIKDNRVVIDKLVDLLIEKETIDGDEFRQIVGDFTSLP 619          
BLAST of CX296512 vs. ExPASy Swiss-Prot
Match: FTSH_PORPU (Cell division protease ftsH homolog OS=Porphyra purpurea GN=ftsH PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 6.300e-20
Identity = 48/116 (41.38%), Postives = 76/116 (65.52%), Query Frame = 2
Query:   38 TGAAGDLQQITGLAKQMVTTFGMSEIGPWSLMDGSQSGDVIMRMMARNSMSEKLAEDIDAAVKRLSDRAYEIALSQIRNNREAIDKIVEVLLEKETMSGDEFRAILSEFVEIPAEN 385
            TGA+ DLQQ+T +A+QMVT FGMS+IGP SL        +   M   +  S+++A +ID  V+ +    Y+ A   +++NR  +D++V++L+EKET+ G+EFR I+ E+  IP +N
Sbjct:  507 TGASNDLQQVTSMARQMVTRFGMSKIGPLSLESQGSDPFLGRGMGGGSEYSDEVATNIDKQVREIVSECYKEAKKIVKDNRVVMDRLVDLLIEKETIEGNEFRHIVKEYTAIPEKN 622          
The following BLAST results are available for this feature:
BLAST of CX296512 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 18
Match NameE-valueIdentityDescription
FTSH2_ORYSJ4.322e-5390.76Cell division protease ftsH homolog 2, chloroplast... [more]
FTSH8_ARATH4.779e-5288.14Cell division protease ftsH homolog 8, chloroplast... [more]
FTSH2_ARATH2.008e-5084.75Cell division protease ftsH homolog 2, chloroplast... [more]
FTSH6_ARATH7.914e-3968.42Cell division protease ftsH homolog 6, chloroplast... [more]
FTSH6_ORYSJ1.492e-3764.41Cell division protease ftsH homolog 6, chloroplast... [more]
FTSH1_SYNY31.227e-2344.17Cell division protease ftsH homolog 1 OS=Synechocy... [more]
FTSH_ODOSI8.790e-2248.31Cell division protease ftsH homolog OS=Odontella s... [more]
FSTH_PORYE3.693e-2045.76Cell division protease ftsH homolog OS=Porphyra ye... [more]
FTSH_GUITH4.823e-2045.61Cell division protease ftsH homolog OS=Guillardia ... [more]
FTSH_PORPU6.300e-2041.38Cell division protease ftsH homolog OS=Porphyra pu... [more]

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Properties
Property NameValue
Genbank descriptionC05142B11SK FerrChloL1 Citrus clementina cDNA clone C05142B11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296512 ID=CX296512; Name=CX296512; organism=Citrus clementina; type=EST; length=557bp
GATTCGGCCGAGGGATTTTTGGAGGGCCTGAAGTGCAACAGGAGCAGCTG
GTGATTTGCAGCAGATCACTGGTTTGGCCAAACAGATGGTAACCACATTT
GGAATGTCTGAAATTGGCCCATGGTCGCTCATGGACGGATCACAGAGTGG
TGATGTCATCATGAGAATGATGGCAAGGAACTCAATGTCTGAGAAGCTTG
CTGAAGACATTGATGCTGCAGTCAAGAGACTATCAGACCGTGCCTATGAG
ATTGCGTTGAGCCAAATAAGGAACAACCGTGAAGCCATTGACAAGATCGT
GGAAGTTCTTCTTGAGAAGGAAACAATGTCAGGGGATGAATTCCGGGCAA
TCCTCTCAGAGTTTGTCGAAATCCCAGCTGAAAATAGGGTCCCTCCAGCT
GTTCCAGCACCATTATCTGTATCTGTTTGAGTGGCATTAATATTATCCAT
ACTTGAAATTTCAGCCACTCTTTGAACGCATACACTTGAATGTATAATAC
TCTGTATTCTTGATCAAATGTAAGTAGGATTGTACACTAAAAAAAAAAAA
AAAAAAA
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