CX296528

Overview
NameCX296528
Unique NameCX296528
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length372
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig3690 contig Ccv1_Contig3690:430..801. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX296528 vs. ExPASy Swiss-Prot
Match: GLGS2_VICFA (Glucose-1-phosphate adenylyltransferase small subunit 2, chloroplastic OS=Vicia faba GN=AGPP PE=2 SV=1)

HSP 1 Score: 166.777 bits (421), Expect = 3.072e-41
Identity = 81/89 (91.01%), Postives = 88/89 (98.88%), Query Frame = 1
Query:   49 DTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIKRAIIDKNARIGDNVKIVNSDSVQEAARETDGYFIKSGIVTIIKDALIPSGTII 315
            DTLLMGADYYETDADRRFLAAKG VPIGIGKNSHI+RAIIDKNARIGD+VKI+NSD+VQEAARET+GYFIKSGIVT+IKDALIPSGT+I
Sbjct:  424 DTLLMGADYYETDADRRFLAAKGGVPIGIGKNSHIRRAIIDKNARIGDDVKIINSDNVQEAARETEGYFIKSGIVTVIKDALIPSGTVI 512          
BLAST of CX296528 vs. ExPASy Swiss-Prot
Match: GLGS1_VICFA (Glucose-1-phosphate adenylyltransferase small subunit 1, chloroplastic OS=Vicia faba GN=AGPC PE=2 SV=1)

HSP 1 Score: 166.392 bits (420), Expect = 4.012e-41
Identity = 80/89 (89.89%), Postives = 89/89 (100.00%), Query Frame = 1
Query:   49 DTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIKRAIIDKNARIGDNVKIVNSDSVQEAARETDGYFIKSGIVTIIKDALIPSGTII 315
            DTLLMGADYYET+AD+RFLAAKGSVPIGIGKNSHIKRAI+DKNARIG+NVKI+NSD+VQEAARET+GYFIKSGIVTIIKDALIPSGT++
Sbjct:  420 DTLLMGADYYETEADKRFLAAKGSVPIGIGKNSHIKRAIVDKNARIGENVKIINSDNVQEAARETEGYFIKSGIVTIIKDALIPSGTVL 508          
BLAST of CX296528 vs. ExPASy Swiss-Prot
Match: GLGS_BRANA (Glucose-1-phosphate adenylyltransferase small subunit, chloroplastic OS=Brassica napus GN=AGPS1 PE=2 SV=1)

HSP 1 Score: 163.696 bits (413), Expect = 2.601e-40
Identity = 79/89 (88.76%), Postives = 87/89 (97.75%), Query Frame = 1
Query:   49 DTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIKRAIIDKNARIGDNVKIVNSDSVQEAARETDGYFIKSGIVTIIKDALIPSGTII 315
            DTLLMGADYYETDADR  LAAKGS+PIGIG++SHIKRAIIDKNARIGDNVKI+N+D+VQEAARETDGYFIKSGIVT+IKDALIPSGT+I
Sbjct:  432 DTLLMGADYYETDADRTLLAAKGSIPIGIGRDSHIKRAIIDKNARIGDNVKIINTDNVQEAARETDGYFIKSGIVTVIKDALIPSGTVI 520          
BLAST of CX296528 vs. ExPASy Swiss-Prot
Match: GLGS_SOLTU (Glucose-1-phosphate adenylyltransferase small subunit, chloroplastic/amyloplastic OS=Solanum tuberosum PE=1 SV=2)

HSP 1 Score: 162.54 bits (410), Expect = 5.794e-40
Identity = 80/89 (89.89%), Postives = 85/89 (95.51%), Query Frame = 1
Query:   49 DTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIKRAIIDKNARIGDNVKIVNSDSVQEAARETDGYFIKSGIVTIIKDALIPSGTII 315
            D+LLMGADYYETDADR+ LAAKGSVPIGIGKN HIKRAIIDKNARIGDNVKI+N D+VQEAARETDGYFIKSGIVT+IKDALIPSG II
Sbjct:  433 DSLLMGADYYETDADRKLLAAKGSVPIGIGKNCHIKRAIIDKNARIGDNVKIINKDNVQEAARETDGYFIKSGIVTVIKDALIPSGIII 521          
BLAST of CX296528 vs. ExPASy Swiss-Prot
Match: GLGS_WHEAT (Glucose-1-phosphate adenylyltransferase small subunit, chloroplastic/amyloplastic OS=Triticum aestivum GN=AGP-S PE=2 SV=1)

HSP 1 Score: 157.532 bits (397), Expect = 1.864e-38
Identity = 75/89 (84.27%), Postives = 84/89 (94.38%), Query Frame = 1
Query:   49 DTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIKRAIIDKNARIGDNVKIVNSDSVQEAARETDGYFIKSGIVTIIKDALIPSGTII 315
            DTLLMGADYYET+AD++ LA KG +PIGIGKNSHIKRAIIDKNARIGDNV I+N D+VQEAARETDGYFIKSGIVT+IKDAL+PSGT+I
Sbjct:  385 DTLLMGADYYETEADKKLLAEKGGIPIGIGKNSHIKRAIIDKNARIGDNVMIINVDNVQEAARETDGYFIKSGIVTVIKDALLPSGTVI 473          
BLAST of CX296528 vs. ExPASy Swiss-Prot
Match: GLGS_HORVU (Glucose-1-phosphate adenylyltransferase small subunit, chloroplastic/amyloplastic OS=Hordeum vulgare PE=2 SV=1)

HSP 1 Score: 157.532 bits (397), Expect = 1.864e-38
Identity = 75/89 (84.27%), Postives = 84/89 (94.38%), Query Frame = 1
Query:   49 DTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIKRAIIDKNARIGDNVKIVNSDSVQEAARETDGYFIKSGIVTIIKDALIPSGTII 315
            DTLLMGADYYET+AD++ LA KG +PIGIGKNSHIKRAIIDKNARIGDNV I+N D+VQEAARETDGYFIKSGIVT+IKDAL+PSGT+I
Sbjct:  425 DTLLMGADYYETEADKKLLAEKGGIPIGIGKNSHIKRAIIDKNARIGDNVMIINVDNVQEAARETDGYFIKSGIVTVIKDALLPSGTVI 513          
BLAST of CX296528 vs. ExPASy Swiss-Prot
Match: GLGS_ARATH (Glucose-1-phosphate adenylyltransferase small subunit, chloroplastic OS=Arabidopsis thaliana GN=APS1 PE=2 SV=2)

HSP 1 Score: 157.147 bits (396), Expect = 2.434e-38
Identity = 76/89 (85.39%), Postives = 85/89 (95.51%), Query Frame = 1
Query:   49 DTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIKRAIIDKNARIGDNVKIVNSDSVQEAARETDGYFIKSGIVTIIKDALIPSGTII 315
            D+LLMGADYYET  ++  L+AKGSVPIGIGKNSHIKRAIIDKNARIGDNVKI+NSD+VQEAARETDGYFIKSGIVT+IKDALIP+GT+I
Sbjct:  432 DSLLMGADYYETATEKSLLSAKGSVPIGIGKNSHIKRAIIDKNARIGDNVKIINSDNVQEAARETDGYFIKSGIVTVIKDALIPTGTVI 520          
BLAST of CX296528 vs. ExPASy Swiss-Prot
Match: GLGS_SOLLC (Glucose-1-phosphate adenylyltransferase small subunit, chloroplastic OS=Solanum lycopersicum PE=2 SV=1)

HSP 1 Score: 154.451 bits (389), Expect = 1.578e-37
Identity = 76/89 (85.39%), Postives = 83/89 (93.26%), Query Frame = 1
Query:   49 DTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIKRAIIDKNARIGDNVKIVNSDSVQEAARETDGYFIKSGIVTIIKDALIPSGTII 315
            D+LLMGADYYETDA+R+ LAAKGSVPIGIGKN   KRAIIDKNARIGDNVKI+N D+VQEAARETDGYFIKSGIVT+IKDALIPSG +I
Sbjct:  433 DSLLMGADYYETDAERKLLAAKGSVPIGIGKNCLYKRAIIDKNARIGDNVKIINKDNVQEAARETDGYFIKSGIVTVIKDALIPSGIVI 521          
BLAST of CX296528 vs. ExPASy Swiss-Prot
Match: GLGS_ORYSJ (Glucose-1-phosphate adenylyltransferase small subunit, chloroplastic/amyloplastic OS=Oryza sativa subsp. japonica GN=AGPS PE=2 SV=4)

HSP 1 Score: 153.68 bits (387), Expect = 2.691e-37
Identity = 72/89 (80.90%), Postives = 83/89 (93.26%), Query Frame = 1
Query:   49 DTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIKRAIIDKNARIGDNVKIVNSDSVQEAARETDGYFIKSGIVTIIKDALIPSGTII 315
            D+LLMGADYYET+AD++ L  KG +PIGIGKN HI+RAIIDKNARIGDNVKI+N D+VQEAARETDGYFIKSGIVT+IKDAL+PSGT+I
Sbjct:  426 DSLLMGADYYETEADKKLLGEKGGIPIGIGKNCHIRRAIIDKNARIGDNVKIINVDNVQEAARETDGYFIKSGIVTVIKDALLPSGTVI 514          
BLAST of CX296528 vs. ExPASy Swiss-Prot
Match: GLGS_MAIZE (Glucose-1-phosphate adenylyltransferase small subunit (Fragment) OS=Zea mays GN=GLG1 PE=2 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 3.886e-36
Identity = 72/90 (80.00%), Postives = 84/90 (93.33%), Query Frame = 1
Query:   49 DTLLMGADYY-ETDADRRFLAAKGSVPIGIGKNSHIKRAIIDKNARIGDNVKIVNSDSVQEAARETDGYFIKSGIVTIIKDALIPSGTII 315
            DTLLMGADYY ET+AD++ LA  G +PIGIGKNSHI++AIIDKNARIGDNVKI+N+D+VQEAARETDGYFIK GIVT+IKDAL+PSGT+I
Sbjct:   36 DTLLMGADYYAETEADKKLLAENGGIPIGIGKNSHIRKAIIDKNARIGDNVKILNADNVQEAARETDGYFIKGGIVTVIKDALLPSGTVI 125          
The following BLAST results are available for this feature:
BLAST of CX296528 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 37
Match NameE-valueIdentityDescription
GLGS2_VICFA3.072e-4191.01Glucose-1-phosphate adenylyltransferase small subu... [more]
GLGS1_VICFA4.012e-4189.89Glucose-1-phosphate adenylyltransferase small subu... [more]
GLGS_BRANA2.601e-4088.76Glucose-1-phosphate adenylyltransferase small subu... [more]
GLGS_SOLTU5.794e-4089.89Glucose-1-phosphate adenylyltransferase small subu... [more]
GLGS_WHEAT1.864e-3884.27Glucose-1-phosphate adenylyltransferase small subu... [more]
GLGS_HORVU1.864e-3884.27Glucose-1-phosphate adenylyltransferase small subu... [more]
GLGS_ARATH2.434e-3885.39Glucose-1-phosphate adenylyltransferase small subu... [more]
GLGS_SOLLC1.578e-3785.39Glucose-1-phosphate adenylyltransferase small subu... [more]
GLGS_ORYSJ2.691e-3780.90Glucose-1-phosphate adenylyltransferase small subu... [more]
GLGS_MAIZE3.886e-3680.00Glucose-1-phosphate adenylyltransferase small subu... [more]

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Properties
Property NameValue
Genbank descriptionC05142E09SK FerrChloL1 Citrus clementina cDNA clone C05142E09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296528 ID=CX296528; Name=CX296528; organism=Citrus clementina; type=EST; length=372bp
CCGGGCTGCAGATTCGGCCGAGGCCTCGTGCCGAATTCGGCACGAGGAGA
TACTTTACTTATGGGAGCAGATTATTATGAGACGGATGCGGACAGGAGGT
TTTTGGCTGCAAAGGGTAGTGTTCCAATTGGTATTGGCAAGAATTCTCAC
ATCAAGAGAGCAATAATTGACAAAAATGCTCGAATTGGGGATAATGTGAA
GATCGTCAACAGTGACAGTGTGCAAGAAGCAGCAAGGGAAACAGATGGAT
ACTTCATCAAGAGCGGGATTGTCACAATAATCAAGGATGCCTTGATTCCC
AGTGGAACCATAATCTAAACTGTCGTCTTCTCTTCTCAGTTTCATCCCAA
GCTACGGGCACCTTCCCCTCTA
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