CX296554

Overview
NameCX296554
Unique NameCX296554
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length699
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX296554 vs. ExPASy Swiss-Prot
Match: ATPD_SPIOL (ATP synthase delta chain, chloroplastic OS=Spinacia oleracea GN=ATPD PE=1 SV=2)

HSP 1 Score: 83.9593 bits (206), Expect = 8.720e-16
Identity = 44/136 (32.35%), Postives = 77/136 (56.62%), Query Frame = 1
Query:  286 ASGYAAALLDKALCHSSLEAVQRDVLKLSRLLKNEQIQAVCADPFVGDKDKGQIVKELLSSWKVNRYLAALLRMLIERNKVAMVSDVLEEFQRIYDDLIGTRVVFVSSAKKMEEDQLFHIAKKSSNLCGAAQVKIR 693
            AS YA+AL D A    +LEA   DV KL R+   E +    A+P +   +K  ++ E++++  +  + A  + +LI+  ++ +V ++L EF+ +++ + GT V  V+S  K+E D L  IAK    + GA  V+I+
Sbjct:   75 ASRYASALADVADVTGTLEATNSDVEKLIRIFSEEPVYYFFANPVISIDNKRSVLDEIITTSGLQPHTANFINILIDSERINLVKEILNEFEDVFNKITGTEVAVVTSVVKLENDHLAQIAKGVQKITGAKNVRIK 210          
BLAST of CX296554 vs. ExPASy Swiss-Prot
Match: ATPD_TOBAC (ATP synthase delta chain, chloroplastic OS=Nicotiana tabacum GN=ATPD PE=2 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.139e-15
Identity = 41/136 (30.15%), Postives = 78/136 (57.35%), Query Frame = 1
Query:  286 ASGYAAALLDKALCHSSLEAVQRDVLKLSRLLKNEQIQAVCADPFVGDKDKGQIVKELLSSWKVNRYLAALLRMLIERNKVAMVSDVLEEFQRIYDDLIGTRVVFVSSAKKMEEDQLFHIAKKSSNLCGAAQVKIR 693
            A  YA AL D A  + +LE    D+ K+ ++  +E +      P VG++ K ++V E++SS  +  ++A  L +L++  +V ++ ++++EF+++Y+ L  T +  V+S  K+E   L  IAK    L G+  V+I+
Sbjct:   66 AGSYANALADIAKSNGTLEQTTADLEKIEKISDDEAVFNFFVSPIVGEEKKRELVDEIVSSSSIQPHVANFLNILVDMKRVELIKEIVKEFEKVYNTLTDTELAVVTSVVKLESQHLAQIAKGVQRLTGSKNVRIK 201          
BLAST of CX296554 vs. ExPASy Swiss-Prot
Match: ATPD_PEA (ATP synthase delta chain, chloroplastic OS=Pisum sativum GN=ATPD PE=1 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 3.664e-14
Identity = 42/136 (30.88%), Postives = 76/136 (55.88%), Query Frame = 1
Query:  286 ASGYAAALLDKALCHSSLEAVQRDVLKLSRLLKNEQIQAVCADPFVGDKDKGQIVKELLSSWKVNRYLAALLRMLIERNKVAMVSDVLEEFQRIYDDLIGTRVVFVSSAKKMEEDQLFHIAKKSSNLCGAAQVKIR 693
            A  YAAAL D A  +++L+A+  D  K+ +L  + ++    + P V D  K Q++ E  ++     +    L +LI+  ++ M+ D+++EF+ +Y+ L  T +V V+S  K+E   L  IAK+   L GA +V+ +
Sbjct:   69 AGSYAAALADLANSNNTLDAITADFDKIEQLFSDPKVFDYFSSPIVEDSTKRQLIGEFATTSGFQPHTHNFLNVLIDSKRIDMIIDIIKEFEFVYNTLTDTELVVVTSVVKLESHHLAQIAKQVQKLTGAKKVRTK 204          
BLAST of CX296554 vs. ExPASy Swiss-Prot
Match: ATPD_CHLRE (ATP synthase delta chain, chloroplastic OS=Chlamydomonas reinhardtii GN=ATPD PE=1 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.626e-12
Identity = 41/137 (29.93%), Postives = 78/137 (56.93%), Query Frame = 1
Query:  286 ASGYAAALLDKALCHSSLEAVQRDVLKLSRLLK-NEQIQAVCADPFVGDKDKGQIVKELLSSWKVNRYLAALLRMLIERNKVAMVSDVLEEFQRIYDDLIGTRVVFVSSAKKMEEDQLFHIAKKSSNLCGAAQVKIR 693
            +  YA AL++ A     LEAV  DV  ++ L+K N ++ A+  +P V    K  ++ ++       +Y    L +L+E++++++V ++ E F+ +Y  +  T+V  + SA K+E++Q F IAKK   L G+  +K++
Sbjct:   39 SESYAKALVELADEKGKLEAVHADVDAVAGLMKENAKLSALIMNPVVESDKKRAVLAKIAKEAGFQQYTINWLNLLVEKDRLSLVPEICECFEDLYCQMTDTQVATLRSAVKLEQEQQFLIAKKLQELTGSKNIKLK 175          
The following BLAST results are available for this feature:
BLAST of CX296554 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
ATPD_SPIOL8.720e-1632.35ATP synthase delta chain, chloroplastic OS=Spinaci... [more]
ATPD_TOBAC1.139e-1530.15ATP synthase delta chain, chloroplastic OS=Nicotia... [more]
ATPD_PEA3.664e-1430.88ATP synthase delta chain, chloroplastic OS=Pisum s... [more]
ATPD_CHLRE2.626e-1229.93ATP synthase delta chain, chloroplastic OS=Chlamyd... [more]
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Properties
Property NameValue
Genbank descriptionC05146A10SK FerrChloL1 Citrus clementina cDNA clone C05146A10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296554 ID=CX296554; Name=CX296554; organism=Citrus clementina; type=EST; length=699bp
CGCAATTTTGTATCCATGGATACTCTTTCAAGCTCGGTTTCCACCTTCAA
ATTTGCAGCTCTTCACTCAACACCTCGAGAATTACATAACTTCAAAGCTC
CTCCAAACACATCCCAATCTCATCATCAGTTTCATCCACACCAGTCCCAC
CTCAGCTCAACCAGACCCAACAAAACTGCCGCTTCTTTCACTCGCAGGAG
CTTCTCTAATAGTTATCCATCGTTAATTTCCTCCTCCGGAACCTCAACTC
CCAAGTCAGCTTCCCCAAATAGCCATCAGAAACCTGCCAGCGGCTACGCT
GCAGCCCTTCTAGACAAAGCTCTATGCCACAGTTCACTTGAAGCTGTCCA
AAGGGATGTCCTAAAGTTATCAAGGTTGCTCAAGAATGAGCAAATTCAAG
CTGTCTGTGCTGACCCTTTTGTGGGTGATAAAGACAAGGGGCAAATAGTG
AAGGAACTGTTGAGTAGTTGGAAAGTTAATAGGTATTTGGCGGCTCTGCT
GAGGATGCTGATTGAGAGAAATAAGGTGGCCATGGTGAGTGATGTTTTGG
AGGAATTTCAGAGGATCTATGACGACTTGATTGGGACTCGAGTTGTGTTT
GTTTCGTCTGCAAAGAAGATGGAGGAAGATCAACTCTTTCATATTGCTAA
GAAGAGTTCAAACCTTTGTGGGGCTGCACAAGTCAAGATTAGAATTTGA
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