CX296592

Overview
NameCX296592
Unique NameCX296592
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length614
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX296592 vs. ExPASy Swiss-Prot
Match: NIT2_RAT (Omega-amidase NIT2 OS=Rattus norvegicus GN=Nit2 PE=1 SV=1)

HSP 1 Score: 183.726 bits (465), Expect = 6.226e-46
Identity = 95/190 (50.00%), Postives = 118/190 (62.11%), Query Frame = 1
Query:   40 VTKFKVGLCQLSVTADKXXXXXXXXXXXXXXXXXXXXXXXLPEIWNSPYSNDSFPVYAEDIDAGGDASPSTAMLSEVARLLKITIVGGSIPERSGDRLYNTCCVFGSDGKLIAKHRKIHLFDIDIPGKITFIESKSLTAGETPTIVDTDVGRIGIGICYDIRFQELXMIYGARGAHLICYPGAFNMTTGP 609
            ++ F++ L QL V++ K                       LPE +NSPY  + FP YAE I        ST  LSEVA+   I ++GGSIPE    +LYNTC VFG DG L+ KHRKIHLFDID+PGKITF ESK+L+ G++ +  DT   R+G+GICYD+RF EL  IY  RG  L+ YPGAFNMTTGP
Sbjct:    1 MSTFRLALIQLQVSSIKSDNITRACSLVREAAKQGANIVSLPECFNSPYGTNYFPEYAEKIPG-----ESTKKLSEVAKENSIYLIGGSIPEEDDGKLYNTCAVFGPDGNLLVKHRKIHLFDIDVPGKITFQESKTLSPGDSFSTFDTPYCRVGLGICYDMRFAELAQIYARRGCQLLVYPGAFNMTTGP 185          
BLAST of CX296592 vs. ExPASy Swiss-Prot
Match: NIT2_HUMAN (Omega-amidase NIT2 OS=Homo sapiens GN=NIT2 PE=1 SV=1)

HSP 1 Score: 182.57 bits (462), Expect = 1.387e-45
Identity = 94/190 (49.47%), Postives = 118/190 (62.11%), Query Frame = 1
Query:   40 VTKFKVGLCQLSVTADKXXXXXXXXXXXXXXXXXXXXXXXLPEIWNSPYSNDSFPVYAEDIDAGGDASPSTAMLSEVARLLKITIVGGSIPERSGDRLYNTCCVFGSDGKLIAKHRKIHLFDIDIPGKITFIESKSLTAGETPTIVDTDVGRIGIGICYDIRFQELXMIYGARGAHLICYPGAFNMTTGP 609
            +T F++ L QL +++ K                       LPE +NSPY    FP YAE I        ST  LSEVA+   I ++GGSIPE    +LYNTC VFG DG L+AK+RKIHLFDID+PGKITF ESK+L+ G++ +  DT   R+G+GICYD+RF EL  IY  RG  L+ YPGAFN+TTGP
Sbjct:    1 MTSFRLALIQLQISSIKSDNVTRACSFIREAATQGAKIVSLPECFNSPYGAKYFPEYAEKIPG-----ESTQKLSEVAKECSIYLIGGSIPEEDAGKLYNTCAVFGPDGTLLAKYRKIHLFDIDVPGKITFQESKTLSPGDSFSTFDTPYCRVGLGICYDMRFAELAQIYAQRGCQLLVYPGAFNLTTGP 185          
BLAST of CX296592 vs. ExPASy Swiss-Prot
Match: NIT2_BOVIN (Omega-amidase NIT2 OS=Bos taurus GN=NIT2 PE=2 SV=1)

HSP 1 Score: 182.57 bits (462), Expect = 1.387e-45
Identity = 94/187 (50.27%), Postives = 119/187 (63.64%), Query Frame = 1
Query:   49 FKVGLCQLSVTADKXXXXXXXXXXXXXXXXXXXXXXXLPEIWNSPYSNDSFPVYAEDIDAGGDASPSTAMLSEVARLLKITIVGGSIPERSGDRLYNTCCVFGSDGKLIAKHRKIHLFDIDIPGKITFIESKSLTAGETPTIVDTDVGRIGIGICYDIRFQELXMIYGARGAHLICYPGAFNMTTGP 609
            F++ L QL V++ K                       LPE +NSPY    FP YAE I   GD   ST  LSEVA+   + ++GGSIPE+   +LYNTC VFG DG L+ KHRK+HLFDID+PGKITF ES++L+ G++ ++ DT   R+G+GICYDIRF EL  IY  RG  L+ YPGAFN+TTGP
Sbjct:    4 FRLALIQLQVSSIKSENLTRACGLIREASKQGAQIVSLPECFNSPYGTKYFPDYAEKIP--GD---STQKLSEVAKECSMYVIGGSIPEKDAGKLYNTCAVFGPDGTLLVKHRKLHLFDIDVPGKITFQESETLSPGDSFSLFDTPYCRVGLGICYDIRFAELAQIYAQRGCQLLVYPGAFNLTTGP 185          
BLAST of CX296592 vs. ExPASy Swiss-Prot
Match: NIT2_MOUSE (Omega-amidase NIT2 OS=Mus musculus GN=Nit2 PE=1 SV=1)

HSP 1 Score: 180.644 bits (457), Expect = 5.270e-45
Identity = 93/190 (48.95%), Postives = 117/190 (61.58%), Query Frame = 1
Query:   40 VTKFKVGLCQLSVTADKXXXXXXXXXXXXXXXXXXXXXXXLPEIWNSPYSNDSFPVYAEDIDAGGDASPSTAMLSEVARLLKITIVGGSIPERSGDRLYNTCCVFGSDGKLIAKHRKIHLFDIDIPGKITFIESKSLTAGETPTIVDTDVGRIGIGICYDIRFQELXMIYGARGAHLICYPGAFNMTTGP 609
            ++ F++ L QL V++ K                       LPE +NSPY    FP YAE I        ST  LSEVA+   I ++GGSIPE    +LYNTC VFG DG L+ KHRKIHLFDID+PGKITF ESK+L+ G++ +  DT   ++G+GICYD+RF EL  IY  RG  L+ YPGAFN+TTGP
Sbjct:    1 MSTFRLALIQLQVSSIKSDNLTRACSLVREAAKQGANIVSLPECFNSPYGTTYFPDYAEKIPG-----ESTQKLSEVAKESSIYLIGGSIPEEDAGKLYNTCSVFGPDGSLLVKHRKIHLFDIDVPGKITFQESKTLSPGDSFSTFDTPYCKVGLGICYDMRFAELAQIYAQRGCQLLVYPGAFNLTTGP 185          
BLAST of CX296592 vs. ExPASy Swiss-Prot
Match: NIT2A_XENLA (Omega-amidase NIT2-A OS=Xenopus laevis GN=nit2a PE=2 SV=1)

HSP 1 Score: 178.333 bits (451), Expect = 2.616e-44
Identity = 92/190 (48.42%), Postives = 116/190 (61.05%), Query Frame = 1
Query:   40 VTKFKVGLCQLSVTADKXXXXXXXXXXXXXXXXXXXXXXXLPEIWNSPYSNDSFPVYAEDIDAGGDASPSTAMLSEVARLLKITIVGGSIPERSGDRLYNTCCVFGSDGKLIAKHRKIHLFDIDIPGKITFIESKSLTAGETPTIVDTDVGRIGIGICYDIRFQELXMIYGARGAHLICYPGAFNMTTGP 609
            + KFK+ L Q  V+  K                       LPE +NSPY    FP YAE I        ST +LS+VA+   I ++GGSIPE    +LYNTC VFG DG L+ KHRKIHLFDID+PGKI F ES++L+ G++ ++ DT   ++G+GICYDIRF EL  IY  +G  L+ YPGAFNMTTGP
Sbjct:    1 MAKFKLSLVQFLVSPVKSDNLNRACKLIKEAAQKGAQIVALPECFNSPYGTTYFPEYAEKIPG-----ESTELLSQVAKECGIYLIGGSIPEEDCGKLYNTCAVFGPDGTLLVKHRKIHLFDIDVPGKIRFQESETLSPGDSFSVFDTPYCKVGVGICYDIRFAELAQIYANKGCQLLVYPGAFNMTTGP 185          
BLAST of CX296592 vs. ExPASy Swiss-Prot
Match: YAUB_SCHPO (UPF0012 hydrolase C26A3.11 OS=Schizosaccharomyces pombe GN=SPAC26A3.11 PE=2 SV=1)

HSP 1 Score: 177.563 bits (449), Expect = 4.462e-44
Identity = 94/188 (50.00%), Postives = 117/188 (62.23%), Query Frame = 1
Query:   49 FKVGLCQLSVTADKXXXXXXXXXXXXXXXXXXXXXXXLPEIWNSPYSNDSFPVYAEDIDAGGDASPSTAMLSEVARLLKITIVGGSIPERSGDRLYNTCCVFGSDGKLIAKHRKIHLFDIDIPGKITFIESKSLTAGETPTIVDTDVGRIGIGICYDIRFQELXMIYGARGAHLICYPGAFNMTTGPL 612
            F++GL QL+ T DK                       LPEI+NSPY    F  YAE I+   ++SPS   LS +A+  K  + GGSIPER   +LYNT  VF   GKLIA HRKIHLFDIDIPG ++F ES SL+ G+  T+VDT+ G+ G+GICYDIRF EL MI    G  ++ YPGAFN++TGPL
Sbjct:   44 FRIGLVQLANTKDKSENLQLARLKVLEAAKNGSNVIVLPEIFNSPYGTGYFNQYAEPIE---ESSPSYQALSSMAKDTKTYLFGGSIPERKDGKLYNTAMVFDPSGKLIAVHRKIHLFDIDIPGGVSFRESDSLSPGDAMTMVDTEYGKFGLGICYDIRFPELAMIAARNGCSVMIYPGAFNLSTGPL 228          
BLAST of CX296592 vs. ExPASy Swiss-Prot
Match: NIT2B_XENLA (Omega-amidase NIT2-B OS=Xenopus laevis GN=nit2b PE=2 SV=1)

HSP 1 Score: 175.637 bits (444), Expect = 1.695e-43
Identity = 89/190 (46.84%), Postives = 115/190 (60.53%), Query Frame = 1
Query:   40 VTKFKVGLCQLSVTADKXXXXXXXXXXXXXXXXXXXXXXXLPEIWNSPYSNDSFPVYAEDIDAGGDASPSTAMLSEVARLLKITIVGGSIPERSGDRLYNTCCVFGSDGKLIAKHRKIHLFDIDIPGKITFIESKSLTAGETPTIVDTDVGRIGIGICYDIRFQELXMIYGARGAHLICYPGAFNMTTGP 609
            + KF++ L Q  V+  K                       LPE +NSPY    FP YAE I        ST +LS+VA+   I ++GGSIPE    + YNTC VFG DG L+ KHRKIHLFDID+PGKI F ES++L+ G++ ++ DT   ++G+GICYD+RF EL  IY  +G  L+ YPGAFNMTTGP
Sbjct:    1 MAKFRLSLVQFLVSPVKSDNLNKACKLIKEAAQKGAQIVALPECFNSPYGTKYFPEYAEKIPG-----ESTELLSQVAKECGIYLIGGSIPEEDSGKFYNTCAVFGPDGTLLVKHRKIHLFDIDVPGKIRFQESETLSPGDSFSVFDTPYCKVGVGICYDMRFAELAQIYANKGCQLLVYPGAFNMTTGP 185          
BLAST of CX296592 vs. ExPASy Swiss-Prot
Match: NIT2_XENTR (Omega-amidase NIT2 OS=Xenopus tropicalis GN=nit2 PE=2 SV=1)

HSP 1 Score: 175.252 bits (443), Expect = 2.214e-43
Identity = 89/190 (46.84%), Postives = 115/190 (60.53%), Query Frame = 1
Query:   40 VTKFKVGLCQLSVTADKXXXXXXXXXXXXXXXXXXXXXXXLPEIWNSPYSNDSFPVYAEDIDAGGDASPSTAMLSEVARLLKITIVGGSIPERSGDRLYNTCCVFGSDGKLIAKHRKIHLFDIDIPGKITFIESKSLTAGETPTIVDTDVGRIGIGICYDIRFQELXMIYGARGAHLICYPGAFNMTTGP 609
            + KF++ L Q  V+  K                       LPE +NSPY    FP YAE I        ST  LS+VA+   I ++GGSIPE    +LYNTC VFG DG L+ KHRKIHLFDID+PGKI F ES++L+ G++ ++ +T   ++G+GICYDIRF EL  +Y  +G  L+ YPGAFNMTTGP
Sbjct:    1 MAKFRLSLVQFLVSPVKSENLNRACKLIKEAAQKGAQIVALPECFNSPYGTKYFPEYAEKIPG-----ESTERLSQVAKECGIYLIGGSIPEEDSGKLYNTCAVFGPDGTLLVKHRKIHLFDIDVPGKIRFQESETLSPGDSFSVFETPYCKVGVGICYDIRFAELAQLYSKKGCQLLVYPGAFNMTTGP 185          
BLAST of CX296592 vs. ExPASy Swiss-Prot
Match: NIT2_PONAB (Omega-amidase NIT2 OS=Pongo abelii GN=NIT2 PE=3 SV=1)

HSP 1 Score: 174.481 bits (441), Expect = 3.777e-43
Identity = 92/190 (48.42%), Postives = 115/190 (60.53%), Query Frame = 1
Query:   40 VTKFKVGLCQLSVTADKXXXXXXXXXXXXXXXXXXXXXXXLPEIWNSPYSNDSFPVYAEDIDAGGDASPSTAMLSEVARLLKITIVGGSIPERSGDRLYNTCCVFGSDGKLIAKHRKIHLFDIDIPGKITFIESKSLTAGETPTIVDTDVGRIGIGICYDIRFQELXMIYGARGAHLICYPGAFNMTTGP 609
            +  F++ L QL +++                         LPE +NSPY    FP YAE I        ST  LSEVA+   I ++GGSIPE    +LYNTC VFG DG L+AK+RKIHLFDID+PGKITF ESK+L+ G++    DT   R+G+GICYD+RF EL  IY  RG  L+ YPGAFN+TTGP
Sbjct:    1 MASFRLALIQLQISSINSDNVTRACSFIREAATQGAKIVSLPECFNSPYGTKYFPEYAEKIPG-----ESTQKLSEVAKECSIYLIGGSIPEEDAGKLYNTCAVFGPDGTLLAKYRKIHLFDIDVPGKITFQESKTLSPGDSFCTFDT-YCRVGLGICYDMRFAELAQIYAQRGCQLLVYPGAFNLTTGP 184          
BLAST of CX296592 vs. ExPASy Swiss-Prot
Match: NIT2_DANRE (Omega-amidase NIT2 OS=Danio rerio GN=nit2 PE=2 SV=1)

HSP 1 Score: 174.096 bits (440), Expect = 4.933e-43
Identity = 90/190 (47.37%), Postives = 116/190 (61.05%), Query Frame = 1
Query:   40 VTKFKVGLCQLSVTADKXXXXXXXXXXXXXXXXXXXXXXXLPEIWNSPYSNDSFPVYAEDIDAGGDASPSTAMLSEVARLLKITIVGGSIPERSGDRLYNTCCVFGSDGKLIAKHRKIHLFDIDIPGKITFIESKSLTAGETPTIVDTDVGRIGIGICYDIRFQELXMIYGARGAHLICYPGAFNMTTGP 609
            ++KF++ + QL V+  K                       LPE +NSPY    F  YAE I        ST +LSE A+   I +VGGSIPE  G +LYNTC VFG DG L+  HRKIHLFDID+PGKI F ES++L+ G++ ++ +T   ++G+GICYDIRF EL  IY  +G  L+ YPGAFNMTTGP
Sbjct:    1 MSKFRLAVVQLHVSKIKADNLGRAQTLVKEAAGQGAKVVVLPECFNSPYGTGFFKEYAEKIPG-----ESTQVLSETAKKCGIYLVGGSIPEEDGGKLYNTCSVFGPDGTLLVTHRKIHLFDIDVPGKIRFQESETLSPGKSLSMFETPYCKVGVGICYDIRFAELAQIYAKKGCQLLVYPGAFNMTTGP 185          
The following BLAST results are available for this feature:
BLAST of CX296592 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 21
Match NameE-valueIdentityDescription
NIT2_RAT6.226e-4650.00Omega-amidase NIT2 OS=Rattus norvegicus GN=Nit2 PE... [more]
NIT2_HUMAN1.387e-4549.47Omega-amidase NIT2 OS=Homo sapiens GN=NIT2 PE=1 SV... [more]
NIT2_BOVIN1.387e-4550.27Omega-amidase NIT2 OS=Bos taurus GN=NIT2 PE=2 SV=1[more]
NIT2_MOUSE5.270e-4548.95Omega-amidase NIT2 OS=Mus musculus GN=Nit2 PE=1 SV... [more]
NIT2A_XENLA2.616e-4448.42Omega-amidase NIT2-A OS=Xenopus laevis GN=nit2a PE... [more]
YAUB_SCHPO4.462e-4450.00UPF0012 hydrolase C26A3.11 OS=Schizosaccharomyces ... [more]
NIT2B_XENLA1.695e-4346.84Omega-amidase NIT2-B OS=Xenopus laevis GN=nit2b PE... [more]
NIT2_XENTR2.214e-4346.84Omega-amidase NIT2 OS=Xenopus tropicalis GN=nit2 P... [more]
NIT2_PONAB3.777e-4348.42Omega-amidase NIT2 OS=Pongo abelii GN=NIT2 PE=3 SV... [more]
NIT2_DANRE4.933e-4347.37Omega-amidase NIT2 OS=Danio rerio GN=nit2 PE=2 SV=... [more]

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Properties
Property NameValue
Genbank descriptionC05146E04SK FerrChloL1 Citrus clementina cDNA clone C05146E04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296592 ID=CX296592; Name=CX296592; organism=Citrus clementina; type=EST; length=614bp
GCCAGGGCCCCACCCGCCCTTCCCTTGCCCACTCCCCCCGTCACCAAGTT
TAAGGTTGGGCTTTGCCAATTGTCAGTAACGGCTGACAAAGAAAGGAACA
TCGCTCATGCTCGTAGAGCCATTGAGGAGGCGGCTGAGAAAGGCGCCAAG
CTCATTATTTTGCCTGAGATTTGGAACAGTCCCTATTCGAATGACAGCTT
CCCAGTTTATGCCGAAGACATTGATGCTGGTGGTGATGCATCCCCTTCCA
CCGCCATGCTTTCTGAAGTTGCTCGTCTTCTGAAGATCACTATAGTTGGC
GGCTCTATTCCCGAACGTTCTGGGGATCGATTGTACAATACTTGCTGCGT
CTTTGGTTCTGATGGAAAACTGATAGCTAAGCACCGGAAGATACACCTTT
TTGATATTGACATTCCCGGGAAGATTACCTTTATAGAATCAAAGTCCCTT
ACAGCAGGGGAGACACCAACCATTGTGGACACAGATGTTGGGCGTATTGG
AATAGGTATTTGTTATGATATTCGGTTTCAGGAACTGGNCATGATATATG
GAGCAAGAGGTGCTCACTTGATATGCTATCCTGGGGCATTTAACATGACT
ACTGGGCCATTGCA
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