CX296667

Overview
NameCX296667
Unique NameCX296667
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length749
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX296667_ssr181 microsatellite CX296667_ssr181:181..192. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig11793 contig Ccv1_Contig11793:486..1234. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX296667 vs. ExPASy Swiss-Prot
Match: EIF3G_RAT (Eukaryotic translation initiation factor 3 subunit G OS=Rattus norvegicus GN=Eif3g PE=2 SV=1)

HSP 1 Score: 160.229 bits (404), Expect = 1.073e-38
Identity = 83/172 (48.26%), Postives = 107/172 (62.21%), Query Frame = 1
Query:   52 GAVLMVCRTCGKKGDHWTSRCPFKDLAAPAETFI-----------DKPXXXXXXXXXXXXTKGTYVPPGMRAGAERTGTDM---RRRNDENSVRVTNLSEDTREPDLLELFRPFGAVSRVYVAVDQKTGISRGFGFVNFVNKEDAQRAINKLNGYGYDNLILRVEWATPRTN 525
            G  ++ CR C  KGDHWT+RCP+KD   P +  +           +K               G YVPP +R GA R G  M   RR +D  ++RVTNLSEDTRE DL ELFRPFG++SR+Y+A D+ TG S+GF F++F  +EDA RAI  ++G+GYD+LIL VEWA P TN
Sbjct:  151 GQKIVSCRIC--KGDHWTTRCPYKDTLGPMQKELAEQLGLSTGEKEKLPGELEPVQAAQNKTGKYVPPSLRDGASRRGESMQPNRRADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILNVEWAKPSTN 320          
BLAST of CX296667 vs. ExPASy Swiss-Prot
Match: EIF3G_MOUSE (Eukaryotic translation initiation factor 3 subunit G OS=Mus musculus GN=Eif3g PE=1 SV=2)

HSP 1 Score: 160.229 bits (404), Expect = 1.073e-38
Identity = 83/172 (48.26%), Postives = 107/172 (62.21%), Query Frame = 1
Query:   52 GAVLMVCRTCGKKGDHWTSRCPFKDLAAPAETFI-----------DKPXXXXXXXXXXXXTKGTYVPPGMRAGAERTGTDM---RRRNDENSVRVTNLSEDTREPDLLELFRPFGAVSRVYVAVDQKTGISRGFGFVNFVNKEDAQRAINKLNGYGYDNLILRVEWATPRTN 525
            G  ++ CR C  KGDHWT+RCP+KD   P +  +           +K               G YVPP +R GA R G  M   RR +D  ++RVTNLSEDTRE DL ELFRPFG++SR+Y+A D+ TG S+GF F++F  +EDA RAI  ++G+GYD+LIL VEWA P TN
Sbjct:  151 GQKIVSCRIC--KGDHWTTRCPYKDTLGPMQKELAEQLGLSTGEKEKLPGELEPVQAAQSKTGKYVPPSLRDGASRRGESMQPNRRADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILNVEWAKPSTN 320          
BLAST of CX296667 vs. ExPASy Swiss-Prot
Match: EIF3G_HUMAN (Eukaryotic translation initiation factor 3 subunit G OS=Homo sapiens GN=EIF3G PE=1 SV=2)

HSP 1 Score: 160.229 bits (404), Expect = 1.073e-38
Identity = 83/172 (48.26%), Postives = 107/172 (62.21%), Query Frame = 1
Query:   52 GAVLMVCRTCGKKGDHWTSRCPFKDLAAPAETFI-----------DKPXXXXXXXXXXXXTKGTYVPPGMRAGAERTGTDM---RRRNDENSVRVTNLSEDTREPDLLELFRPFGAVSRVYVAVDQKTGISRGFGFVNFVNKEDAQRAINKLNGYGYDNLILRVEWATPRTN 525
            G  ++ CR C  KGDHWT+RCP+KD   P +  +           +K               G YVPP +R GA R G  M   RR +D  ++RVTNLSEDTRE DL ELFRPFG++SR+Y+A D+ TG S+GF F++F  +EDA RAI  ++G+GYD+LIL VEWA P TN
Sbjct:  151 GQKIVSCRIC--KGDHWTTRCPYKDTLGPMQKELAEQLGLSTGEKEKLPGELEPVQATQNKTGKYVPPSLRDGASRRGESMQPNRRADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILNVEWAKPSTN 320          
BLAST of CX296667 vs. ExPASy Swiss-Prot
Match: EIF3G_BOVIN (Eukaryotic translation initiation factor 3 subunit G OS=Bos taurus GN=EIF3G PE=2 SV=1)

HSP 1 Score: 160.229 bits (404), Expect = 1.073e-38
Identity = 83/172 (48.26%), Postives = 107/172 (62.21%), Query Frame = 1
Query:   52 GAVLMVCRTCGKKGDHWTSRCPFKDLAAPAETFI-----------DKPXXXXXXXXXXXXTKGTYVPPGMRAGAERTGTDM---RRRNDENSVRVTNLSEDTREPDLLELFRPFGAVSRVYVAVDQKTGISRGFGFVNFVNKEDAQRAINKLNGYGYDNLILRVEWATPRTN 525
            G  ++ CR C  KGDHWT+RCP+KD   P +  +           +K               G YVPP +R GA R G  M   RR +D  ++RVTNLSEDTRE DL ELFRPFG++SR+Y+A D+ TG S+GF F++F  +EDA RAI  ++G+GYD+LIL VEWA P TN
Sbjct:  151 GQKIVSCRIC--KGDHWTTRCPYKDTLGPMQKELAEQLGLSTGEKEKLPGELEPVQATQNKTGKYVPPSLRDGASRRGESMQPNRRADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILNVEWAKPSTN 320          
BLAST of CX296667 vs. ExPASy Swiss-Prot
Match: EIF3G_XENTR (Eukaryotic translation initiation factor 3 subunit G OS=Xenopus tropicalis GN=eif3g PE=2 SV=1)

HSP 1 Score: 159.458 bits (402), Expect = 1.830e-38
Identity = 84/173 (48.55%), Postives = 107/173 (61.85%), Query Frame = 1
Query:   52 GAVLMVCRTCGKKGDHWTSRCPFKDLAAPAETFI---------DK---PXXXXXXXXXXXXTKGTYVPPGMRAGAERTGTDM---RRRNDENSVRVTNLSEDTREPDLLELFRPFGAVSRVYVAVDQKTGISRGFGFVNFVNKEDAQRAINKLNGYGYDNLILRVEWATPRTN 525
            G  ++ CR C  KGDHWT+RCP+KD   P +  +         DK   P              G YVPP +R G  R G  M   RR +D  ++RVTNLSEDTRE DL ELFRPFG++SR+Y+A D+ TG S+GF F++F  +EDA RAI  ++G+GYD+LIL VEWA P TN
Sbjct:  140 GQKIVSCRIC--KGDHWTTRCPYKDTLGPMQKELAEQLGLSTGDKEKAPGAEPEPAQAPVSKTGKYVPPSLRDGGSRRGESMQPNRRADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILNVEWAKPSTN 310          
BLAST of CX296667 vs. ExPASy Swiss-Prot
Match: EI3GB_XENLA (Eukaryotic translation initiation factor 3 subunit G-B OS=Xenopus laevis GN=eif3g-B PE=2 SV=1)

HSP 1 Score: 159.458 bits (402), Expect = 1.830e-38
Identity = 84/173 (48.55%), Postives = 107/173 (61.85%), Query Frame = 1
Query:   52 GAVLMVCRTCGKKGDHWTSRCPFKDLAAPAETFI---------DK---PXXXXXXXXXXXXTKGTYVPPGMRAGAERTGTDM---RRRNDENSVRVTNLSEDTREPDLLELFRPFGAVSRVYVAVDQKTGISRGFGFVNFVNKEDAQRAINKLNGYGYDNLILRVEWATPRTN 525
            G  ++ CR C  KGDHWT+RCP+KD   P +  +         DK   P              G YVPP +R G  R G  M   RR +D  ++RVTNLSEDTRE DL ELFRPFG++SR+Y+A D+ TG S+GF F++F  +EDA RAI  ++G+GYD+LIL VEWA P TN
Sbjct:  138 GQKIVSCRIC--KGDHWTTRCPYKDTLGPMQKELAEQLGLSTADKEKAPGAEPEPAQAPVSKTGKYVPPSLRDGGSRRGESMQPNRRADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILNVEWAKPSTN 308          
BLAST of CX296667 vs. ExPASy Swiss-Prot
Match: EI3GA_XENLA (Eukaryotic translation initiation factor 3 subunit G-A OS=Xenopus laevis GN=eif3g-A PE=2 SV=1)

HSP 1 Score: 159.458 bits (402), Expect = 1.830e-38
Identity = 84/173 (48.55%), Postives = 107/173 (61.85%), Query Frame = 1
Query:   52 GAVLMVCRTCGKKGDHWTSRCPFKDLAAPAETFI---------DK---PXXXXXXXXXXXXTKGTYVPPGMRAGAERTGTDM---RRRNDENSVRVTNLSEDTREPDLLELFRPFGAVSRVYVAVDQKTGISRGFGFVNFVNKEDAQRAINKLNGYGYDNLILRVEWATPRTN 525
            G  ++ CR C  KGDHWT+RCP+KD   P +  +         DK   P              G YVPP +R G  R G  M   RR +D  ++RVTNLSEDTRE DL ELFRPFG++SR+Y+A D+ TG S+GF F++F  +EDA RAI  ++G+GYD+LIL VEWA P TN
Sbjct:  138 GQKIVSCRIC--KGDHWTTRCPYKDTLGPMQKELAEQLGLSTGDKEKAPGAEPEPAQAPVSKTGKYVPPSLRDGGSRRGESMQPNRRADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILNVEWAKPSTN 308          
BLAST of CX296667 vs. ExPASy Swiss-Prot
Match: EIF3G_DANRE (Eukaryotic translation initiation factor 3 subunit G OS=Danio rerio GN=eif3g PE=1 SV=1)

HSP 1 Score: 156.377 bits (394), Expect = 1.549e-37
Identity = 82/171 (47.95%), Postives = 106/171 (61.99%), Query Frame = 1
Query:   52 GAVLMVCRTCGKKGDHWTSRCPFKDLAAPAETFI---------DKPXXXXXXXXXXXXTK-GTYVPPGMRAGAERTGTDM---RRRNDENSVRVTNLSEDTREPDLLELFRPFGAVSRVYVAVDQKTGISRGFGFVNFVNKEDAQRAINKLNGYGYDNLILRVEWATPRTN 525
            G  ++ CR C  KGDHWT+RCP+KD   P +  +         +K              K G YVPP +R G  R G  M   RR +D  ++RVTNLSEDTRE DL ELFRPFG++SR+Y+A D+ TG S+GF F++F  +EDA RAI  ++G+GYD+LIL VEWA P  N
Sbjct:  125 GQKIVSCRIC--KGDHWTTRCPYKDTLGPMQKELAEQLGLSTGEKEKAAEPEPAQPVQNKTGKYVPPSLRDGGTRRGESMQPNRRADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKNTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILNVEWAKPSNN 293          
BLAST of CX296667 vs. ExPASy Swiss-Prot
Match: EIF3G_NEMVE (Eukaryotic translation initiation factor 3 subunit G OS=Nematostella vectensis GN=v1g171563 PE=3 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 1.227e-34
Identity = 77/168 (45.83%), Postives = 103/168 (61.31%), Query Frame = 1
Query:   52 GAVLMVCRTCGKKGDHWTSRCPFKDLAAPAETFIDKPXXXXXXXXXXXX--------TKGTYVPPGMRAGAERTGTDM---RRRNDENSVRVTNLSEDTREPDLLELFRPFGAVSRVYVAVDQKTGISRGFGFVNFVNKEDAQRAINKLNGYGYDNLILRVEWATPRT 522
            G  ++ CR C  KGDHWT++CP+KD        + +                     T G YV PG+R GA R G  M    +R++  ++RVTNLSE+TRE DL ELFRP G +SR+++A D+ T  S+GF F+NFV++EDA RAI  L+G+GYD+LIL VEWA P T
Sbjct:  127 GQKIVQCRIC--KGDHWTTKCPYKDQLEVIHQQLKEDDGSGQPGTPPSEPANPAAASTSGKYVAPGLRDGANRRGETMPSRSQRDETATIRVTNLSEETRESDLQELFRPLGPISRIFLAKDKFTNQSKGFAFINFVHREDAARAIEVLSGFGYDHLILNVEWAKPST 292          
BLAST of CX296667 vs. ExPASy Swiss-Prot
Match: EIF3G_SCHPO (Eukaryotic translation initiation factor 3 subunit G OS=Schizosaccharomyces pombe GN=tif35 PE=1 SV=2)

HSP 1 Score: 130.183 bits (326), Expect = 1.189e-29
Identity = 67/167 (40.12%), Postives = 107/167 (64.07%), Query Frame = 1
Query:   28 AKAQLGKGGAVLMVCRTCGKKGDHWTSRCPFKDLAAPAETFIDKPXXXXXXXXXXXXTKGTYVPPGMRAGAERTGTDM---RRRNDENSVRVTNLSEDTREPDLLELFRPFGAVSRVYVAVDQKTGISRGFGFVNFVNKEDAQRAINKLNGYGYDNLILRVEWATPR 519
            A A++   G+ ++ CR C  KG+H+T++CP+K +  P +                   KG Y+ P +RAG+ R   D    R R+D  ++RVTNLS+DTRE +L +LFR FG + RVY+A D++TG ++GF FV++ +++ A +A ++L+GYG++NLILR E++ PR
Sbjct:  117 AAAKVKAKGSSVVRCRAC--KGNHFTAQCPYKSIIGPVDEPPLDASPVSSRASGALGEKGRYIAPHLRAGSGRESGDSMFKRERDDSATLRVTNLSDDTREEELRDLFRRFGGIQRVYLAKDKETGRAKGFAFVSYYDRDCAIKARDRLDGYGWNNLILRCEFSKPR 281          
The following BLAST results are available for this feature:
BLAST of CX296667 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 71
Match NameE-valueIdentityDescription
EIF3G_RAT1.073e-3848.26Eukaryotic translation initiation factor 3 subunit... [more]
EIF3G_MOUSE1.073e-3848.26Eukaryotic translation initiation factor 3 subunit... [more]
EIF3G_HUMAN1.073e-3848.26Eukaryotic translation initiation factor 3 subunit... [more]
EIF3G_BOVIN1.073e-3848.26Eukaryotic translation initiation factor 3 subunit... [more]
EIF3G_XENTR1.830e-3848.55Eukaryotic translation initiation factor 3 subunit... [more]
EI3GB_XENLA1.830e-3848.55Eukaryotic translation initiation factor 3 subunit... [more]
EI3GA_XENLA1.830e-3848.55Eukaryotic translation initiation factor 3 subunit... [more]
EIF3G_DANRE1.549e-3747.95Eukaryotic translation initiation factor 3 subunit... [more]
EIF3G_NEMVE1.227e-3445.83Eukaryotic translation initiation factor 3 subunit... [more]
EIF3G_SCHPO1.189e-2940.12Eukaryotic translation initiation factor 3 subunit... [more]

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Properties
Property NameValue
Genbank descriptionC05801D12SK FerrChloL1 Citrus clementina cDNA clone C05801D12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296667 ID=CX296667; Name=CX296667; organism=Citrus clementina; type=EST; length=749bp
GATTCGGCCCAGGCCGTGCCGAATTCGGCCAAGGCGCAACTTGGGAAAGG
TGGTGCTGTTCTCATGGTGTGTAGGACTTGTGGTAAGAAGGGTGATCACT
GGACGTCAAGGTGCCCTTTCAAGGATCTTGCTGCTCCAGCTGAGACATTC
ATTGATAAACCAGCTGCATCAGAGACTGCAGCTGCTGCTGCTGGCGCGAC
CAAGGGAACATATGTTCCTCCTGGCATGAGAGCAGGGGCGGAGAGAACTG
GAACTGATATGAGACGCAGGAATGATGAGAACTCTGTTAGGGTCACCAAC
CTATCGGAGGACACTCGGGAACCTGACTTGCTTGAGCTCTTCCGGCCTTT
TGGTGCTGTTAGCCGAGTTTATGTTGCTGTTGATCAGAAGACTGGCATAA
GCAGAGGTTTTGGTTTTGTGAACTTTGTGAACAAGGAAGATGCTCAGAGA
GCTATCAACAAACTGAATGGCTATGGTTATGACAATCTCATCCTCAGAGT
TGAATGGGCCACTCCAAGGACTAACTAGATCGATCTATTTATCCTTGAGC
TTTAACGGGATACAATATCAATTTTGTGTATTATTTTATACTATCTTAAG
TATTGAATGATCTTGGAGTGTTTTGTTGAGAGACTATGGCTTTCCTACAA
GTACTTTGTACTCGAGATGATTTAATTTATGCCGTANGTTCAATGTTTTT
CAATGTTATTTGATTTCTAATAAGATACCAGGCACACTTATGTTTCCTT
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