CX296690

Overview
NameCX296690
Unique NameCX296690
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length708
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14243 contig Ccv1_Contig14243:356..1064. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX296690 vs. ExPASy Swiss-Prot
Match: UCRIA_SPIOL (Cytochrome b6-f complex iron-sulfur subunit, chloroplastic OS=Spinacia oleracea GN=petC PE=1 SV=2)

HSP 1 Score: 216.468 bits (550), Expect = 1.434e-59
Identity = 95/108 (87.96%), Postives = 105/108 (97.22%), Query Frame = -1
Query:  334 THGPGDRTLTEGLKGDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNSAENKFICPCHGSQYNNQGRVVRGPAPLSLALAHANIENGKVVFVPWTETDFRTGEAPWWA 657
            TH PGDRTLT+GLKGDPTYLVVE DKTLA++GINAVCTHLGCVVP+N+AENKFICPCHGSQYNNQGRVVRGPAPLSLALAH ++++GKVVFVPWTETDFRTGEAPWW+
Sbjct:  122 THAPGDRTLTQGLKGDPTYLVVESDKTLATFGINAVCTHLGCVVPFNAAENKFICPCHGSQYNNQGRVVRGPAPLSLALAHCDVDDGKVVFVPWTETDFRTGEAPWWS 229          

HSP 2 Score: 33.113 bits (74), Expect = 1.434e-59
Identity = 14/21 (66.67%), Postives = 17/21 (80.95%), Query Frame = -2
Query:  642 AKDAIGNDIIAADWLTRTALG 704
            AKDA+GND+IAA+WL   A G
Sbjct:  106 AKDALGNDVIAAEWLKTHAPG 126          
BLAST of CX296690 vs. ExPASy Swiss-Prot
Match: UCRIA_ARATH (Cytochrome b6-f complex iron-sulfur subunit, chloroplastic OS=Arabidopsis thaliana GN=petC PE=1 SV=1)

HSP 1 Score: 213.001 bits (541), Expect = 4.511e-58
Identity = 96/109 (88.07%), Postives = 103/109 (94.50%), Query Frame = -1
Query:  334 THGPGDRTLTEGLKGDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNSAENKFICPCHGSQYNNQGRVVRGPAPLSLALAHANI-ENGKVVFVPWTETDFRTGEAPWWA 657
            THGPGDRTLT+GLKGDPTYLVVE DKTLA+YGINAVCTHLGCVVPWN AENKF+CPCHGSQYN QGRVVRGPAPLSLALAHA+I E GKV+FVPW ETDFRTG+APWW+
Sbjct:  121 THGPGDRTLTQGLKGDPTYLVVENDKTLATYGINAVCTHLGCVVPWNKAENKFLCPCHGSQYNAQGRVVRGPAPLSLALAHADIDEAGKVLFVPWVETDFRTGDAPWWS 229          

HSP 2 Score: 31.5722 bits (70), Expect = 4.511e-58
Identity = 11/15 (73.33%), Postives = 15/15 (100.00%), Query Frame = -2
Query:  660 AKDAIGNDIIAADWL 704
            AKDA+GND++AA+WL
Sbjct:  105 AKDALGNDVVAAEWL 119          
BLAST of CX296690 vs. ExPASy Swiss-Prot
Match: UCRIB_TOBAC (Cytochrome b6-f complex iron-sulfur subunit 2, chloroplastic OS=Nicotiana tabacum GN=petC2 PE=2 SV=1)

HSP 1 Score: 213.772 bits (543), Expect = 4.512e-58
Identity = 96/108 (88.89%), Postives = 104/108 (96.30%), Query Frame = -1
Query:  334 THGPGDRTLTEGLKGDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNSAENKFICPCHGSQYNNQGRVVRGPAPLSLALAHANIENGKVVFVPWTETDFRTGEAPWWA 657
            TH PG+RTLT+GLKGDPTYLVVE D TLA+YGINAVCTHLGCVVP+N+AENKFICPCHGSQYNNQGRVVRGPAPLSLALAHA+I++GKVVFVPW ETDFRTGEAPWWA
Sbjct:  121 THPPGNRTLTQGLKGDPTYLVVENDGTLATYGINAVCTHLGCVVPFNAAENKFICPCHGSQYNNQGRVVRGPAPLSLALAHADIDDGKVVFVPWVETDFRTGEAPWWA 228          

HSP 2 Score: 30.8018 bits (68), Expect = 4.512e-58
Identity = 11/15 (73.33%), Postives = 15/15 (100.00%), Query Frame = -2
Query:  660 AKDAIGNDIIAADWL 704
            AKDA+GND+IA++WL
Sbjct:  105 AKDALGNDVIASEWL 119          
BLAST of CX296690 vs. ExPASy Swiss-Prot
Match: UCRIA_ORYSJ (Cytochrome b6-f complex iron-sulfur subunit, chloroplastic OS=Oryza sativa subsp. japonica GN=petC PE=1 SV=1)

HSP 1 Score: 216.083 bits (549), Expect = 1.000e-57
Identity = 94/108 (87.04%), Postives = 103/108 (95.37%), Query Frame = -1
Query:  334 THGPGDRTLTEGLKGDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNSAENKFICPCHGSQYNNQGRVVRGPAPLSLALAHANIENGKVVFVPWTETDFRTGEAPWWA 657
            THGP DRTLT+GLKGDPTYLVVE DKTLA+YGINAVCTHLGCVVPWN+AENKFICPCHGSQYNNQGRVVRGPAPLSLAL HA++++GKV+FVPW ETDFRTG+ PWWA
Sbjct:  118 THGPNDRTLTQGLKGDPTYLVVEADKTLATYGINAVCTHLGCVVPWNAAENKFICPCHGSQYNNQGRVVRGPAPLSLALVHADVDDGKVLFVPWVETDFRTGDNPWWA 225          

HSP 2 Score: 27.335 bits (59), Expect = 1.000e-57
Identity = 9/15 (60.00%), Postives = 13/15 (86.67%), Query Frame = -2
Query:  660 AKDAIGNDIIAADWL 704
            AKD +GND++A +WL
Sbjct:  102 AKDKLGNDVLAEEWL 116          
BLAST of CX296690 vs. ExPASy Swiss-Prot
Match: UCRIA_SOLTU (Cytochrome b6-f complex iron-sulfur subunit, chloroplastic OS=Solanum tuberosum GN=petC PE=2 SV=1)

HSP 1 Score: 214.157 bits (544), Expect = 1.699e-57
Identity = 94/108 (87.04%), Postives = 103/108 (95.37%), Query Frame = -1
Query:  334 THGPGDRTLTEGLKGDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNSAENKFICPCHGSQYNNQGRVVRGPAPLSLALAHANIENGKVVFVPWTETDFRTGEAPWWA 657
            TH PG RTLT+GLKGDPTYLVVE D TLA+YGINAVCTHLGCVVPWN+AENKFICPCHGSQYNNQG+VVRGPAPLSLALAHA+I++GKVVFVPW ETDFRTG++PWWA
Sbjct:  123 THSPGTRTLTQGLKGDPTYLVVENDGTLATYGINAVCTHLGCVVPWNTAENKFICPCHGSQYNNQGKVVRGPAPLSLALAHADIDDGKVVFVPWVETDFRTGDSPWWA 230          

HSP 2 Score: 28.4906 bits (62), Expect = 1.699e-57
Identity = 11/22 (50.00%), Postives = 15/22 (68.18%), Query Frame = -2
Query:  639 AKDAIGNDIIAADWLTRTALGT 704
            AKDA GND++  +WL   + GT
Sbjct:  107 AKDANGNDVVVTEWLKTHSPGT 128          
BLAST of CX296690 vs. ExPASy Swiss-Prot
Match: UCRIA_TOBAC (Cytochrome b6-f complex iron-sulfur subunit 1, chloroplastic OS=Nicotiana tabacum GN=petC1 PE=2 SV=2)

HSP 1 Score: 211.46 bits (537), Expect = 2.216e-57
Identity = 95/108 (87.96%), Postives = 103/108 (95.37%), Query Frame = -1
Query:  334 THGPGDRTLTEGLKGDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNSAENKFICPCHGSQYNNQGRVVRGPAPLSLALAHANIENGKVVFVPWTETDFRTGEAPWWA 657
            TH PG+RTLT+GLKGDPTYLVVE D TLA+YGINAVCTHLGCVVP+N+AENKFICPCHGSQYNNQGRVVRGPAPLSLALAHA+I++GKVVFVPW ETDFRTGE PWWA
Sbjct:  121 THPPGNRTLTQGLKGDPTYLVVENDGTLATYGINAVCTHLGCVVPFNAAENKFICPCHGSQYNNQGRVVRGPAPLSLALAHADIDDGKVVFVPWVETDFRTGEDPWWA 228          

HSP 2 Score: 30.8018 bits (68), Expect = 2.216e-57
Identity = 11/15 (73.33%), Postives = 15/15 (100.00%), Query Frame = -2
Query:  660 AKDAIGNDIIAADWL 704
            AKDA+GND+IA++WL
Sbjct:  105 AKDALGNDVIASEWL 119          
BLAST of CX296690 vs. ExPASy Swiss-Prot
Match: UCRIA_WHEAT (Cytochrome b6-f complex iron-sulfur subunit, chloroplastic OS=Triticum aestivum GN=petC PE=2 SV=1)

HSP 1 Score: 212.231 bits (539), Expect = 1.088e-56
Identity = 91/107 (85.05%), Postives = 101/107 (94.39%), Query Frame = -1
Query:  337 THGPGDRTLTEGLKGDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNSAENKFICPCHGSQYNNQGRVVRGPAPLSLALAHANIENGKVVFVPWTETDFRTGEAPWW 657
            THGP DRTL +GLKGDPTYLVVE DKTLA+YGINAVCTHLGCVVPWN+AENKF+CPCHGSQYNNQG+VVRGPAPLSLAL HA++++GKVVFVPW ETDFRTG+ PWW
Sbjct:  115 THGPNDRTLAQGLKGDPTYLVVESDKTLATYGINAVCTHLGCVVPWNAAENKFLCPCHGSQYNNQGKVVRGPAPLSLALVHADVDDGKVVFVPWVETDFRTGDNPWW 221          

HSP 2 Score: 27.7202 bits (60), Expect = 1.088e-56
Identity = 10/15 (66.67%), Postives = 12/15 (80.00%), Query Frame = -2
Query:  660 AKDAIGNDIIAADWL 704
            AKD +GNDI+  DWL
Sbjct:   99 AKDKLGNDILVEDWL 113          
BLAST of CX296690 vs. ExPASy Swiss-Prot
Match: UCRIA_FRIAG (Cytochrome b6-f complex iron-sulfur subunit, chloroplastic OS=Fritillaria agrestis GN=petC PE=2 SV=1)

HSP 1 Score: 207.223 bits (526), Expect = 4.098e-56
Identity = 91/109 (83.49%), Postives = 101/109 (92.66%), Query Frame = -1
Query:  334 THGPGDRTLTEGLKGDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNSAENKFICPCHGSQYNNQGRVVRGPAPLSLALAHANI-ENGKVVFVPWTETDFRTGEAPWWA 657
            THGPGDRTL +GL+GDPTYLVVE D++LA+YGINAVCTHLGCVVPWN AENKF+CPCHGSQYNNQG+VVRGPAPLSLAL+H +I E GKVVFVPW ETDFRTGE PWW+
Sbjct:  122 THGPGDRTLAQGLRGDPTYLVVENDRSLATYGINAVCTHLGCVVPWNKAENKFLCPCHGSQYNNQGKVVRGPAPLSLALSHCDISEEGKVVFVPWVETDFRTGENPWWS 230          

HSP 2 Score: 30.8018 bits (68), Expect = 4.098e-56
Identity = 12/15 (80.00%), Postives = 14/15 (93.33%), Query Frame = -2
Query:  660 AKDAIGNDIIAADWL 704
            AKDA+GNDI+AA WL
Sbjct:  106 AKDAVGNDIVAAAWL 120          
BLAST of CX296690 vs. ExPASy Swiss-Prot
Match: UCRIA_PEA (Cytochrome b6-f complex iron-sulfur subunit, chloroplastic OS=Pisum sativum GN=petC PE=2 SV=1)

HSP 1 Score: 205.682 bits (522), Expect = 6.965e-56
Identity = 92/110 (83.64%), Postives = 103/110 (93.64%), Query Frame = -1
Query:  334 THGPGDRTLTEGLKGDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNSAENKFICPCHGSQYNNQGRVVRGPAPLSLALAHAN--IENGKVVFVPWTETDFRTGEAPWWA 657
            TH PGDRTLT+GLKGDPTYLVVEKD+TLA++ INAVCTHLGCVVP+N AENKFICPCHGSQYN+QGRVVRGPAPLSLALAH +  +E+GKVVFVPW ETDFRTG+APWW+
Sbjct:  121 THAPGDRTLTQGLKGDPTYLVVEKDRTLATFAINAVCTHLGCVVPFNQAENKFICPCHGSQYNDQGRVVRGPAPLSLALAHCDVGVEDGKVVFVPWVETDFRTGDAPWWS 230          

HSP 2 Score: 31.5722 bits (70), Expect = 6.965e-56
Identity = 12/21 (57.14%), Postives = 16/21 (76.19%), Query Frame = -2
Query:  642 AKDAIGNDIIAADWLTRTALG 704
            AKDA+GND++A +WL   A G
Sbjct:  105 AKDAVGNDVVATEWLKTHAPG 125          
BLAST of CX296690 vs. ExPASy Swiss-Prot
Match: UCRI_MICAN (Cytochrome b6-f complex iron-sulfur subunit OS=Microcystis aeruginosa (strain NIES-843) GN=petC PE=3 SV=1)

HSP 1 Score: 195.282 bits (495), Expect = 7.490e-52
Identity = 86/109 (78.90%), Postives = 99/109 (90.83%), Query Frame = -1
Query:  334 THGPGDRTLTEGLKGDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNSAENKFICPCHGSQYNNQGRVVRGPAPLSLALAHANI-ENGKVVFVPWTETDFRTGEAPWWA 657
            +H  GDRTL +GLKGDPTYLVV++DKTLA+YGINAVCTHLGCVVPWN++E KF+CPCHGSQYN +G+VVRGPAPLSLALAHAN+ +N KVVF  WTETDFRTGE PWW+
Sbjct:   71 SHNAGDRTLAQGLKGDPTYLVVQEDKTLANYGINAVCTHLGCVVPWNASEEKFMCPCHGSQYNAEGKVVRGPAPLSLALAHANVTDNDKVVFSTWTETDFRTGEEPWWS 179          

HSP 2 Score: 28.4906 bits (62), Expect = 7.490e-52
Identity = 11/17 (64.71%), Postives = 15/17 (88.24%), Query Frame = -2
Query:  657 TAKDAIGNDIIAADWLT 707
            TAKDA+GND+I + +LT
Sbjct:   54 TAKDALGNDVIVSQFLT 70          
The following BLAST results are available for this feature:
BLAST of CX296690 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 55
Match NameE-valueIdentityDescription
UCRIA_SPIOL1.434e-5987.96Cytochrome b6-f complex iron-sulfur subunit, chlor... [more]
UCRIA_ARATH4.511e-5888.07Cytochrome b6-f complex iron-sulfur subunit, chlor... [more]
UCRIB_TOBAC4.512e-5888.89Cytochrome b6-f complex iron-sulfur subunit 2, chl... [more]
UCRIA_ORYSJ1.000e-5787.04Cytochrome b6-f complex iron-sulfur subunit, chlor... [more]
UCRIA_SOLTU1.699e-5787.04Cytochrome b6-f complex iron-sulfur subunit, chlor... [more]
UCRIA_TOBAC2.216e-5787.96Cytochrome b6-f complex iron-sulfur subunit 1, chl... [more]
UCRIA_WHEAT1.088e-5685.05Cytochrome b6-f complex iron-sulfur subunit, chlor... [more]
UCRIA_FRIAG4.098e-5683.49Cytochrome b6-f complex iron-sulfur subunit, chlor... [more]
UCRIA_PEA6.965e-5683.64Cytochrome b6-f complex iron-sulfur subunit, chlor... [more]
UCRI_MICAN7.490e-5278.90Cytochrome b6-f complex iron-sulfur subunit OS=Mic... [more]

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Properties
Property NameValue
Genbank descriptionC05801G02SK FerrChloL1 Citrus clementina cDNA clone C05801G02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296690 ID=CX296690; Name=CX296690; organism=Citrus clementina; type=EST; length=708bp
GAGGCCTCGCTGCCGAATTCGGCACGAGGTTTTGATGAGATAATAGAATT
AATTTTTACTTAATAAATGATAAAAACTTATATCCAACGTTGAAGCTGTA
GCATTACATTGTTGAGCGTATGAATTTTTGAGATACAAAGAATGAATGGA
TAAGAGAAAATTGTCAAGATTGCCAAGATTACAAGATAGCATGATTCAAG
CCAAGTAGCTTTACATGTTGTAAGCTTCATTCTGATAAAGCATGTTCCGT
TACAGTATGTTTATGCAGTACGGCAAAGCAAACCGACCGGCCAAAACTTG
AATATTGAAAGCACAGGCACCGGAACAAGTTTAAGCCCACCATGGAGCTT
CACCAGTTCTGAAATCTGTTTCCGTCCATGGAACGAAGACTACCTTACCA
TTTTCAATGTTGGCATGAGCCAATGCCAATGACAATGGAGCAGGCCCTCT
CACAACTCTTCCTTGGTTATTGTATTGGGATCCGTGGCAGGGACAGATGA
ACTTGTTCTCAGCTGAATTCCATGGCACCACACATCCAAGGTGAGTGCAG
ACAGCATTGATTCCATATGATGCAAGTGTTTTGTCTTTTTCCACAACAAG
GTAGGTTGGATCTCCCTTCAATCCTTCGGTGAGGGTTCGGTCCCCAGGGC
CGTGCGTGTTAGCCAATCAGCGGCAATGATGTCATTGCCAATGGCATCCT
TGGCAGTA
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