CX296695

Overview
NameCX296695
Unique NameCX296695
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length695
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig702 contig Ccv1_Contig702:1..695. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CX296695 vs. ExPASy Swiss-Prot
Match: COPT1_ARATH (Copper transporter 1 OS=Arabidopsis thaliana GN=COPT1 PE=2 SV=2)

HSP 1 Score: 119.783 bits (299), Expect = 1.410e-26
Identity = 58/110 (52.73%), Postives = 75/110 (68.18%), Query Frame = -3 
Query:  163 TFYWGNEAEVLFSGWPGKRAGMYALALIFVFTLGVIAEWLTHSWLIKEGTTNVAGR---IIKTILHAIRVSLGYXXXXXXXSFNAGIFLAAVAGQALGFLLFGSKVFDKT 483
            TF+WG   EVLFSGWPG  +GMYAL LIFVF L V+ EWL HS L++  T + A R   +I+T ++ +R+ L Y       SFNAG+FL A+AG A+GF+LFGS+ F  T
Sbjct:   45 TFFWGKNTEVLFSGWPGTSSGMYALCLIFVFFLAVLTEWLAHSSLLRGSTGDSANRAAGLIQTAVYTLRIGLAYLVMLAVMSFNAGVFLVALAGHAVGFMLFGSQTFRNT 154
The following BLAST results are available for this feature:
BLAST of CX296695 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
COPT1_ARATH1.410e-2652.73Copper transporter 1 OS=Arabidopsis thaliana GN=CO... [more]
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Properties
Property NameValue
Genbank descriptionC05801G07SK FerrChloL1 Citrus clementina cDNA clone C05801G07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296695 ID=CX296695; Name=CX296695; organism=Citrus clementina; type=EST; length=695bp
TTTTTTTTTTTTTTAATTAAAGCAAAATCTGAGTTAAAGTACTACTTACA
CTTGAAATTAAAAGGTAGCTACAGCAGTATATTTCAGAAATGAATTACCC
AAATCAAATTATTATCATAAAATTCAACAACTTTCCGAAGGCGTCTCATA
CGGTGGAAATTCAGTTTTATCAAAAACCTTACTTCCAAACAGCAGAAACC
CTAGAGCCTGGCCAGCAACAGCCGCAAGAAAAATTCCAGCGTTGAACGAC
ATGAGAGAAAGCATCAGCAGATATCCAAGACTAACCCTAATAGCATGCAA
GATCGTTTTAATGATCCTTCCGGCAACATTGGTCGTGCCCTCTTTGATAA
GCCAGCTGTGGGTCAGCCACTCTGCAATGACCCCCAACGTAAATACAAAA
ATTAGGGCTAATGCATACATGCCTGCCCTTTTGCCGGGCCAACCGGAGAA
GAGGACTTCTGCTTCATTGCCCCAGTAGAAGGTCATATGCATCATCATTT
TCTTGTGGAGATGCATCATCATTTCACCGGTGCCGTTCTTCGTAGGCGGG
GGGTCATGGCTGTGACTATCGTTCATGTCTGAAAAAATTATACATACAAT
AGAATTAATCAATGAATTAGATTTCGGCTTTTTGGTTGGATCCAATCAGA
TAATTGGTTGAAACAAGATTGAGGAATTTAGGGTTCGGATGAAGG
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