CX296708

Overview
NameCX296708
Unique NameCX296708
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length599
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX296708 vs. ExPASy Swiss-Prot
Match: CB24_PEA (Chlorophyll a-b binding protein P4, chloroplastic OS=Pisum sativum GN=lhcA-P4 PE=1 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 1.382e-34
Identity = 70/96 (72.92%), Postives = 76/96 (79.17%), Query Frame = -1
Query:  312 WQVIRTPGSVNQDPIFKQYSLPPKEVGYPGGIFNPVNFAPIDEPKEKDFPNGRLPRWAFLGFIV*PNVTGKGPFENFLQPIFDPGHNPMVQTLSGN 599
            WQ I+ PGSVNQDPIFKQYSLP  EVGYPGGIFNP+NFAP  E KEK+  NGRL   AFLGFI+  NVTGKGPF+N LQ I DP HN +VQTL GN
Sbjct:  157 WQDIKNPGSVNQDPIFKQYSLPAGEVGYPGGIFNPLNFAPTLEAKEKEIANGRLAMLAFLGFIIQHNVTGKGPFDNLLQHISDPWHNTIVQTLGGN 252          
BLAST of CX296708 vs. ExPASy Swiss-Prot
Match: CB24_ARATH (Chlorophyll a-b binding protein 4, chloroplastic OS=Arabidopsis thaliana GN=CAB4 PE=1 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 1.995e-33
Identity = 67/94 (71.28%), Postives = 74/94 (78.72%), Query Frame = -1
Query:  318 WQVIRTPGSVNQDPIFKQYSLPPKEVGYPGGIFNPVNFAPIDEPKEKDFPNGRLPRWAFLGFIV*PNVTGKGPFENFLQPIFDPGHNPMVQTLS 599
            WQ I+ PGSVNQDPIFKQYSLP  EVGYPGGIFNP+NFAP  E KEK+  NGRL   AFLGF+V  NVTGKGPFEN LQ + DP HN +VQT +
Sbjct:  158 WQDIKNPGSVNQDPIFKQYSLPKGEVGYPGGIFNPLNFAPTQEAKEKELANGRLAMLAFLGFVVQHNVTGKGPFENLLQHLSDPWHNTIVQTFN 251          
BLAST of CX296708 vs. ExPASy Swiss-Prot
Match: CB120_HORVU (Chlorophyll a-b binding protein 1B-20, chloroplastic (Fragment) OS=Hordeum vulgare GN=LHC Ib-20 PE=1 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 1.211e-30
Identity = 63/95 (66.32%), Postives = 73/95 (76.84%), Query Frame = -1
Query:  315 WQVIRTPGSVNQDPIFKQYSLPPKEVGYPGGIFNPVNFAPIDEPKEKDFPNGRLPRWAFLGFIV*PNVTGKGPFENFLQPIFDPGHNPMVQTLSG 599
            WQ I+ PGSVNQDPIFK YSLPP E GYPG +FNP+NFAP+ E KEK+  NGRL   AFLGF+V  NV GKGPFEN  Q + DP HN ++QT+SG
Sbjct:  137 WQDIKNPGSVNQDPIFKSYSLPPHECGYPGRVFNPLNFAPL-ENKEKELANGRLAMLAFLGFLVQHNVHGKGPFENLQQHLADPWHNTIIQTISG 230          
The following BLAST results are available for this feature:
BLAST of CX296708 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
CB24_PEA1.382e-3472.92Chlorophyll a-b binding protein P4, chloroplastic ... [more]
CB24_ARATH1.995e-3371.28Chlorophyll a-b binding protein 4, chloroplastic O... [more]
CB120_HORVU1.211e-3066.32Chlorophyll a-b binding protein 1B-20, chloroplast... [more]
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Properties
Property NameValue
Genbank descriptionC05801H09SK FerrChloL1 Citrus clementina cDNA clone C05801H09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296708 ID=CX296708; Name=CX296708; organism=Citrus clementina; type=EST; length=599bp
TATTTTTTTTTTTTGTTTTTTTTTTTTTTTTTTTTTTTTTTTAGCAAAAA
AGGGGATTCCAATTAAATTGGGGTTTTTAGAGCAATTGAAGGCATTTCTT
TGGATTCATCATTCTTGCTTTAATAAAGAAAAATTTTCTATTTGTAAGCA
GGACAAGTGGTGTAAAATGATAATATAAATACCATCATAATTCCCCTGAA
CATTGAGAGTTTCCATGTTTACATTGATGCCCAAATCTCCCCCAAAAACC
ACCGAATCCTGGGTACAAAAAAAAGAAACAGGATCCCCAATTGCCAATCC
ATCTTTGATTAATTACCACTTAAGGTCTGGACCATGGGGTTGTGCCCTGG
GTCAAAAATGGGTTGCAGGAAGTTTTCAAATGGCCCTTTGCCTGTCACAT
TGGGCTAAACAATAAATCCCAAGAATGCCCACCTTGGCAATCTCCCATTG
GGAAAGTCCTTCTCCTTTGGCTCATCAATGGGTGCAAAATTAACTGGGTT
GAAAATGCCACCCGGGTACCCAACTTCCTTTGGAGGCAAACTGTACTGCT
TGAAAATGGGGTCTTGGTTGACACTTCCTGGGGTCCTTATGACTTGCCA
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