CX296718

Overview
NameCX296718
Unique NameCX296718
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length650
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig64 contig Ccv1_Contig64:8..657. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX296718 vs. ExPASy Swiss-Prot
Match: PSBR_ARATH (Photosystem II 10 kDa polypeptide, chloroplastic OS=Arabidopsis thaliana GN=PSBR PE=1 SV=1)

HSP 1 Score: 205.297 bits (521), Expect = 2.259e-52
Identity = 103/128 (80.47%), Postives = 112/128 (87.50%), Query Frame = -3
Query:  184 KPAPFTVEKSAARGLPSL--AKTSFKIVAKG-GKIKTDKPYGVNGGMDLREGLDASGRKAKGKGVYQFVDKYGANVDGYSPIYNENDWSPSGDVYTGGATGLAIWAVTLAGFFAGGALFVYNTSALAQ 558
            KPA FTVEK+AARGLPSL  A+ SFKIVA G  KIKTDKP+G+NG MDLR+G+DASGRK KG GVY++VDKYGANVDGYSPIYNEN+WS SGDVY GG TGLAIWAVTLAG  AGGAL VYNTSALAQ
Sbjct:   13 KPAGFTVEKTAARGLPSLTRARPSFKIVASGVKKIKTDKPFGINGSMDLRDGVDASGRKGKGYGVYKYVDKYGANVDGYSPIYNENEWSASGDVYKGGVTGLAIWAVTLAGILAGGALLVYNTSALAQ 140          
BLAST of CX296718 vs. ExPASy Swiss-Prot
Match: PSBR_TOBAC (Photosystem II 10 kDa polypeptide, chloroplastic OS=Nicotiana tabacum GN=PSBR PE=2 SV=1)

HSP 1 Score: 202.601 bits (514), Expect = 1.464e-51
Identity = 98/128 (76.56%), Postives = 111/128 (86.72%), Query Frame = -3
Query:  184 KPAPFTVEKSAARGLPSLAKTS--FKIVAKG-GKIKTDKPYGVNGGMDLREGLDASGRKAKGKGVYQFVDKYGANVDGYSPIYNENDWSPSGDVYTGGATGLAIWAVTLAGFFAGGALFVYNTSALAQ 558
            KPAPF+VEK+A +GLPSLA++S  F++ A G  K+KTDKPYG+NG M LR+G+DASGRK KGKGVYQFVDKYGANVDGYSPIYN +DWSPSGDVY GG TGLAIWAVTL G  AGGAL V+NTSALAQ
Sbjct:    9 KPAPFSVEKTAVKGLPSLARSSSSFRVQASGVKKLKTDKPYGINGSMSLRDGVDASGRKQKGKGVYQFVDKYGANVDGYSPIYNTDDWSPSGDVYVGGTTGLAIWAVTLVGILAGGALLVFNTSALAQ 136          
BLAST of CX296718 vs. ExPASy Swiss-Prot
Match: PSBR_BRACM (Photosystem II 10 kDa polypeptide, chloroplastic OS=Brassica campestris GN=PSBR PE=2 SV=1)

HSP 1 Score: 200.675 bits (509), Expect = 5.563e-51
Identity = 101/129 (78.29%), Postives = 111/129 (86.05%), Query Frame = -3
Query:  184 KPAPFTVEKSAARGLPSLAK---TSFKIVAKG-GKIKTDKPYGVNGGMDLREGLDASGRKAKGKGVYQFVDKYGANVDGYSPIYNENDWSPSGDVYTGGATGLAIWAVTLAGFFAGGALFVYNTSALAQ 558
            KPA FTVEK +ARGLPSL +   +SF+IVA G  KIKTDKP+GVNG MDLR+G+DASGRK KG GVY+FVDKYGANVDGYSPIYNE++WS SGDVY GG TGLAIWAVTLAG  AGGAL VYNTSALAQ
Sbjct:   13 KPAGFTVEKMSARGLPSLTRASPSSFRIVASGVKKIKTDKPFGVNGSMDLRDGVDASGRKGKGYGVYKFVDKYGANVDGYSPIYNEDEWSASGDVYKGGVTGLAIWAVTLAGILAGGALLVYNTSALAQ 141          
BLAST of CX296718 vs. ExPASy Swiss-Prot
Match: PSBR_SOLTU (Photosystem II 10 kDa polypeptide, chloroplastic OS=Solanum tuberosum GN=PSBR PE=2 SV=1)

HSP 1 Score: 194.512 bits (493), Expect = 3.987e-49
Identity = 94/124 (75.81%), Postives = 108/124 (87.10%), Query Frame = -3
Query:  184 FTVEKSAARGLPSLAKTS--FKIVAKG-GKIKTDKPYGVNGGMDLREGLDASGRKAKGKGVYQFVDKYGANVDGYSPIYNENDWSPSGDVYTGGATGLAIWAVTLAGFFAGGALFVYNTSALAQ 546
            FT+EK++ +GLPSLA++S  FK+VA G  K+KTDKPYG+NG M LR+G+DASGRK KGKGVYQ+VDKYGANVDGYSPIYN ++WSPSGDVY GG TGLAIWAVTL G  AGGAL VYNTSALAQ
Sbjct:   15 FTLEKTSVKGLPSLARSSSSFKVVASGVKKLKTDKPYGINGSMALRDGVDASGRKPKGKGVYQYVDKYGANVDGYSPIYNTDEWSPSGDVYVGGTTGLAIWAVTLVGILAGGALLVYNTSALAQ 138          
BLAST of CX296718 vs. ExPASy Swiss-Prot
Match: PSBR_SOLLC (Photosystem II 10 kDa polypeptide, chloroplastic OS=Solanum lycopersicum GN=PSBR PE=2 SV=1)

HSP 1 Score: 191.43 bits (485), Expect = 3.375e-48
Identity = 93/124 (75.00%), Postives = 106/124 (85.48%), Query Frame = -3
Query:  184 FTVEKSAARGLPSLAKTS--FKIVAKG-GKIKTDKPYGVNGGMDLREGLDASGRKAKGKGVYQFVDKYGANVDGYSPIYNENDWSPSGDVYTGGATGLAIWAVTLAGFFAGGALFVYNTSALAQ 546
            FT+EK + +GLPSL ++S  FK+VA G  K+KTDKPYG+NG M LR+G+DASGRK KGKGVYQ+VDKYGANVDGYSPIYN ++WSPSGDVY GG TGLAIWAVTL G  AGGAL VYNTSALAQ
Sbjct:   15 FTLEKISVKGLPSLTRSSSSFKVVASGVKKLKTDKPYGINGSMALRDGVDASGRKPKGKGVYQYVDKYGANVDGYSPIYNTDEWSPSGDVYVGGTTGLAIWAVTLLGILAGGALLVYNTSALAQ 138          
BLAST of CX296718 vs. ExPASy Swiss-Prot
Match: PSBR_SPIOL (Photosystem II 10 kDa polypeptide, chloroplastic OS=Spinacia oleracea GN=PSBR PE=2 SV=1)

HSP 1 Score: 181.03 bits (458), Expect = 4.562e-45
Identity = 91/129 (70.54%), Postives = 105/129 (81.40%), Query Frame = -3
Query:  184 KPAPFTVE-KSAARGLPSLAKTS--FKIVAKG-GKIKTDKPYGVNGGMDLREGLDASGRKAKGKGVYQFVDKYGANVDGYSPIYNENDWSPSGDVYTGGATGLAIWAVTLAGFFAGGALFVYNTSALAQ 558
            KP+ F V+ KSA +GLPSL+++S  F + A G  KIK DKP G+ GGM LR+G+D+SGRK  GKGVYQFVDKYGANVDGYSPIYNE +W+P+GDVY GG TGL IWAVTLAG  AGGAL VYNTSALAQ
Sbjct:   12 KPSSFGVDTKSAVKGLPSLSRSSASFTVRASGVKKIKVDKPLGIGGGMKLRDGVDSSGRKPTGKGVYQFVDKYGANVDGYSPIYNEEEWAPTGDVYAGGTTGLLIWAVTLAGLLAGGALLVYNTSALAQ 140          
BLAST of CX296718 vs. ExPASy Swiss-Prot
Match: PSBR_HORVU (Photosystem II 10 kDa polypeptide, chloroplastic OS=Hordeum vulgare GN=PSBR PE=3 SV=1)

HSP 1 Score: 154.451 bits (389), Expect = 4.572e-37
Identity = 76/119 (63.87%), Postives = 90/119 (75.63%), Query Frame = -3
Query:  187 VEKSAARGLPSLAKTSFKIVAKGGK-IKTDKPYGVNGGMDLREGLDASGRKAKGKGVYQFVDKYGANVDGYSPIYNENDWSPSGDVYTGGATGLAIWAVTLAGFFAGGALFVYNTSALA 540
            +++S   G+   A+ S  IVAK  K ++T +PYG  GG+  +EG+DASGR AKGKGVYQF DKYGANVDGYSPIY   +WSPSGDVY GG TGL +WAVTLAG   GGAL VY+TSALA
Sbjct:   19 LQRSKLGGVRPSARPSLVIVAKKAKKVQTAQPYGPGGGVAFKEGVDASGRVAKGKGVYQFADKYGANVDGYSPIYTPEEWSPSGDVYVGGKTGLFLWAVTLAGILLGGALLVYSTSALA 137          
The following BLAST results are available for this feature:
BLAST of CX296718 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 7
Match NameE-valueIdentityDescription
PSBR_ARATH2.259e-5280.47Photosystem II 10 kDa polypeptide, chloroplastic O... [more]
PSBR_TOBAC1.464e-5176.56Photosystem II 10 kDa polypeptide, chloroplastic O... [more]
PSBR_BRACM5.563e-5178.29Photosystem II 10 kDa polypeptide, chloroplastic O... [more]
PSBR_SOLTU3.987e-4975.81Photosystem II 10 kDa polypeptide, chloroplastic O... [more]
PSBR_SOLLC3.375e-4875.00Photosystem II 10 kDa polypeptide, chloroplastic O... [more]
PSBR_SPIOL4.562e-4570.54Photosystem II 10 kDa polypeptide, chloroplastic O... [more]
PSBR_HORVU4.572e-3763.87Photosystem II 10 kDa polypeptide, chloroplastic O... [more]
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Properties
Property NameValue
Genbank descriptionC05802A08SK FerrChloL1 Citrus clementina cDNA clone C05802A08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296718 ID=CX296718; Name=CX296718; organism=Citrus clementina; type=EST; length=650bp
GCCGAATTCGGCACGGGGGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
TTTCAATTTAAATCCCCCCAAAACATTACACAAAATAGATACCCGAAGTA
GCTGTGGAAGGTACATTTAACAGCAACATTGACAAGTTATACAAAATAGA
GATAATAATGTAACATTGATTGAAATTCATCTACTGGGCCAAAGCACTTG
TGTTGTAAACAAAAAGTGCTCCTCCTGCAAAAAAACCGGCAAGAGTAACA
GCCCAAATTGCCAAGCCAGTTGCACCACCAGTATAGACATCACCACTGGG
AGACCAGTCGTTCTCATTGTAAATAGGACTGTATCCATCAACATTGGCAC
CGTACTTGTCAACAAATTGGTAAACACCTTTCCCCTTAGCCTTCCTGCCG
GATGCATCCAGACCTTCCCTCAAATCCATACCACCATTTACTCCATAGGG
TTTGTCGGTTTTGATCTTGCCGCCTTTAGCCACAATTTTGAATGAAGTTT
TAGCAAGAGAGGGAAGGCCTCTCGCTGCTGATTTCTCCACAGTGAAAGGA
GCTGGTTTCAGGCTCAACGAAGAAGCCATCACTGAGGCTGCCATTTGCTT
TGCTGTGCTCTCCCCTCGTGCCAAATTCGGCACGAAGGGGGGGGCCCGGT
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