CX296815

Overview
NameCX296815
Unique NameCX296815
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length688
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX296815 vs. ExPASy Swiss-Prot
Match: P2SAF_ARATH (Photosystem II stability/assembly factor HCF136, chloroplastic OS=Arabidopsis thaliana GN=HCF136 PE=1 SV=1)

HSP 1 Score: 212.231 bits (539), Expect = 2.052e-54
Identity = 100/130 (76.92%), Postives = 114/130 (87.69%), Query Frame = -2
Query:  298 QPGQAFWQPHNRAVARRIQNMGWRADXXXXXXXXXXXXXLSKGTGITEEFEEVPVQSRGFGILDVGYRSQDEAWAAGGSGVLLKTTNGGKTWIREKAADNIAANLYSVKFINEKKGFVLGNDGVLLQYLG 687
            +PGQ +WQPHNRAVARRIQNMGWRAD             LSKGTGITEEFEEVPVQSRGFGILDVGYRS++EAWAAGGSG+LL+T NGGK+W R+KAADNIAANLY+VKF+++KKGFVLGNDGVLL+Y+G
Sbjct:  274 EPGQPYWQPHNRAVARRIQNMGWRADGGLWLLVRGGGLYLSKGTGITEEFEEVPVQSRGFGILDVGYRSEEEAWAAGGSGILLRTRNGGKSWNRDKAADNIAANLYAVKFVDDKKGFVLGNDGVLLRYVG 403          
BLAST of CX296815 vs. ExPASy Swiss-Prot
Match: P2SAF_ORYSJ (Photosystem II stability/assembly factor HCF136, chloroplastic OS=Oryza sativa subsp. japonica GN=HCF136 PE=3 SV=1)

HSP 1 Score: 199.519 bits (506), Expect = 1.377e-50
Identity = 101/152 (66.45%), Postives = 112/152 (73.68%), Query Frame = -2
Query:  298 QPGQAFWQPHNRAVARRIQNMGWRADXXXXXXXXXXXXXLSKGTG----------------------ITEEFEEVPVQSRGFGILDVGYRSQDEAWAAGGSGVLLKTTNGGKTWIREKAADNIAANLYSVKFINEKKGFVLGNDGVLLQYLG 687
            +PGQ FWQPHNRAVARRIQNMGWRAD             LSKG+G                      ITE+FEE  VQSRGFGILDVGYRS+DEAWAAGGSGVLLKTTNGGKTW+R+KAADNIAANLYSVKF+ + KG+VLGNDGVLL+Y+G
Sbjct:  265 EPGQPFWQPHNRAVARRIQNMGWRADGGLWLLVRGGGLFLSKGSGFQFFYRGLNDAHAISYLHPPNQITEDFEEASVQSRGFGILDVGYRSKDEAWAAGGSGVLLKTTNGGKTWVRDKAADNIAANLYSVKFLGDNKGYVLGNDGVLLRYVG 416          
BLAST of CX296815 vs. ExPASy Swiss-Prot
Match: YC48L_SYNY3 (Ycf48-like protein OS=Synechocystis sp. (strain PCC 6803) GN=slr2034 PE=3 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 7.120e-23
Identity = 52/128 (40.62%), Postives = 76/128 (59.38%), Query Frame = -2
Query:  304 PGQAFWQPHNRAVARRIQNMGWRADXXXXXXXXXXXXXLSKGTGITEEFEEVPVQSRG-FGILDVGYRSQDEAWAAGGSGVLLKTTNGGKTWIREKAADNIAANLYSVKFINEKKGFVLGNDGVLLQY 684
            PGQ  W PHNR  +RR+Q MG+  D              S      E  + +  Q +G +G+LD+ +R+ +E W AG SG LL + +GG+TW ++   ++I ANLY V F++ +KGFVLG DG+LL+Y
Sbjct:  205 PGQTEWTPHNRNSSRRLQTMGYGKDGQLWLLARGGQLQFSTDPDAEEWSDVIAPQDKGSWGLLDLSFRTPEEVWVAGASGNLLMSQDGGQTWAKDTGVEDIPANLYRVVFLSPEKGFVLGQDGILLKY 332          
BLAST of CX296815 vs. ExPASy Swiss-Prot
Match: YC48L_ANAVT (Ycf48-like protein OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=Ava_1856 PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 1.754e-21
Identity = 52/129 (40.31%), Postives = 77/129 (59.69%), Query Frame = -2
Query:  304 QPGQAFWQPHNRAVARRIQNMGWRADXXXXXXXXXXXXXLSKGTGITEEFE-EVPVQSRGFGILDVGYRSQDEAWAAGGSGVLLKTTNGGKTWIREKAADNIAANLYSVKFINEKKGFVLGNDGVLLQY 687
            +PGQ  W PHNR  +RR++NMG+  D              S  T   E  + + P  +  +G+LD+ YR+ +E W  GGSG LL +T+GGKTW +++  + +AAN Y V F+   +GFV+G+ GVLL+Y
Sbjct:  198 EPGQNAWVPHNRNSSRRVENMGFSQDGLWLLARGGQVQF-SDPTKPDEWLDAQTPELATSWGLLDMAYRTPNEVWIGGGSGNLLVSTDGGKTWEKDRDVEEVAANFYKVVFLKPDQGFVIGDRGVLLKY 325          
BLAST of CX296815 vs. ExPASy Swiss-Prot
Match: YC48L_ANASP (Ycf48-like protein OS=Anabaena sp. (strain PCC 7120) GN=alr3844 PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 3.907e-21
Identity = 49/128 (38.28%), Postives = 72/128 (56.25%), Query Frame = -2
Query:  304 QPGQAFWQPHNRAVARRIQNMGWRADXXXXXXXXXXXXXLSKGTGITEEFEEVPVQSRGFGILDVGYRSQDEAWAAGGSGVLLKTTNGGKTWIREKAADNIAANLYSVKFINEKKGFVLGNDGVLLQY 687
            + GQ  W PHNR  +RR++NMG+  D                         E P  +  +G+LD+ YR+ +E W  GGSG LL +T+GGKTW +++  + +AAN Y V F+   +GFV+G+ GVLL+Y
Sbjct:  198 EAGQNAWVPHNRNSSRRVENMGFSQDGLWLLARGGQVQFSDPANPDEWLDAETPELATSWGLLDMAYRTPNEVWIGGGSGNLLVSTDGGKTWEKDRDVEEVAANFYKVVFLKPDQGFVIGDRGVLLKY 325          
BLAST of CX296815 vs. ExPASy Swiss-Prot
Match: YC48L_SYNP2 (Ycf48-like protein OS=Synechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6) GN=SYNPCC7002_A0229 PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 8.703e-21
Identity = 51/131 (38.93%), Postives = 70/131 (53.44%), Query Frame = -2
Query:  304 PGQAFWQPHNRAVARRIQNMGWRADXXXXXXXXXXXXXLSKGTGI--TEEFEE--VPVQSRGFGILDVGYRSQDEAWAAGGSGVLLKTTNGGKTWIREKAADNIAANLYSVKFINEKKGFVLGNDGVLLQY 684
            PG   W PHNR  +RR+Q+MG+  +              S  T     E + E   P      G+L +GYR+  E WA GGSG ++ + +GG TW R+ A + I  N Y V F+NE KGF+LG  GV+L+Y
Sbjct:  203 PGDTEWTPHNRNSSRRLQSMGFNGEDKLWLLARGGVVQFSDDTNPDNAEAWSEPVTPQYRNSVGLLHIGYRTPAELWAVGGSGSVVVSKDGGDTWFRDAALEEIPTNFYRVVFLNENKGFILGQQGVILRY 333          
BLAST of CX296815 vs. ExPASy Swiss-Prot
Match: YC48L_SYNP6 (Ycf48-like protein OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=syc0372_d PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 2.532e-20
Identity = 52/140 (37.14%), Postives = 78/140 (55.71%), Query Frame = -2
Query:  304 QPGQAFWQPHNRAVARRIQNMGWRADXXXXXXXXXXXXXLSKGTGITEEFEEV------------PVQSRGFGILDVGYRSQDEAWAAGGSGVLLKTTNGGKTWIREKAADNIAANLYSVKFINEKKGFVLGNDGVLLQY 687
            +PG   W PH R  +RR+Q MG+  D              SK + I + +EE+            P ++ G+G LD+ YRS+ E W +GGSG LL + +GG+ W R++    + +NLY++KF   K+GFVLG  G+LL+Y
Sbjct:  205 KPGDTTWTPHQRTSSRRLQLMGFGPDDRTWLIARGGRLQFSKTSQI-DNWEEMLEESDAWGTAIEPERNAGWGFLDLAYRSKQEIWLSGGSGTLLVSEDGGEHWQRDRVIAKLPSNLYTIKFFAPKQGFVLGQRGLLLRY 343          
BLAST of CX296815 vs. ExPASy Swiss-Prot
Match: YC48L_SYNE7 (Ycf48-like protein OS=Synechococcus elongatus (strain PCC 7942) GN=Synpcc7942_1178 PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 2.532e-20
Identity = 52/140 (37.14%), Postives = 78/140 (55.71%), Query Frame = -2
Query:  304 QPGQAFWQPHNRAVARRIQNMGWRADXXXXXXXXXXXXXLSKGTGITEEFEEV------------PVQSRGFGILDVGYRSQDEAWAAGGSGVLLKTTNGGKTWIREKAADNIAANLYSVKFINEKKGFVLGNDGVLLQY 687
            +PG   W PH R  +RR+Q MG+  D              SK + I + +EE+            P ++ G+G LD+ YRS+ E W +GGSG LL + +GG+ W R++    + +NLY++KF   K+GFVLG  G+LL+Y
Sbjct:  205 KPGDTTWTPHQRTSSRRLQLMGFGPDDRTWLIARGGRLQFSKTSQI-DNWEEMLEESDAWGTAIEPERNAGWGFLDLAYRSKQEIWLSGGSGTLLVSEDGGEHWQRDRVIAKLPSNLYTIKFFAPKQGFVLGQRGLLLRY 343          
BLAST of CX296815 vs. ExPASy Swiss-Prot
Match: YC48L_THEEB (Ycf48-like protein OS=Thermosynechococcus elongatus (strain BP-1) GN=tll1695 PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 5.641e-20
Identity = 46/131 (35.11%), Postives = 74/131 (56.49%), Query Frame = -2
Query:  301 QPGQAFWQPHNRAVARRIQNMGWRADXXXXXXXXXXXXXLSKGTGITEEFEEV--PVQSRGFGILDVGYRSQDEAWAAGGSGVLLKTTNGGKTWIREKAADNIAANLYSVKFINEKKGFVLGNDGVLLQYL 687
            +PGQ  W+PHNR  +RR+ NMG+  D              S     +E + E+  P++    G LD+ YR+ +E W AGG+G LL + +GG+TW ++     + +N Y + F +  +GF+LG  G+LL+Y+
Sbjct:  210 EPGQTAWEPHNRTTSRRLHNMGFTPDGRLWMIVNGGKIAFSDPDN-SENWGELLSPLRRNSVGFLDLAYRTPNEVWLAGGAGALLCSQDGGQTWQQDVDVKKVPSNFYKILFFSPDQGFILGQKGILLRYV 339          
BLAST of CX296815 vs. ExPASy Swiss-Prot
Match: P2SAF_GUITH (Photosystem II stability/assembly factor HCF136, chloroplastic OS=Guillardia theta GN=hcf136 PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 8.146e-19
Identity = 47/136 (34.56%), Postives = 75/136 (55.15%), Query Frame = -2
Query:  304 QPGQAFWQPHNRAVARRIQNMGW-RADXXXXXXXXXXXXXLSKGTGITE-------EFEEVPVQSRGFGILDVGYRSQDEAWAAGGSGVLLKTTNGGKTWIREKAADNIAANLYSVKFINEKKGFVLGNDGVLLQY 687
            +PGQ FW P  R  +RRIQ+MG+ + D             LS  T   +        FE + +++ G+GILD  + +  + W   G G++  +T+ GK W +    D ++ NLY +KF+N  KGF+LG++G+LL+Y
Sbjct:  259 EPGQDFWIPRARETSRRIQSMGFIQNDNQKGIWMSTRGGGLSVSTKNFDFESISSFNFENIDIKTGGYGILDAAFVNDKDIWIICGGGIVYNSTDKGKNWTKVDGIDKLSGNLYKIKFVNNNKGFILGSNGLLLRY 394          
The following BLAST results are available for this feature:
BLAST of CX296815 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 18
Match NameE-valueIdentityDescription
P2SAF_ARATH2.052e-5476.92Photosystem II stability/assembly factor HCF136, c... [more]
P2SAF_ORYSJ1.377e-5066.45Photosystem II stability/assembly factor HCF136, c... [more]
YC48L_SYNY37.120e-2340.63Ycf48-like protein OS=Synechocystis sp. (strain PC... [more]
YC48L_ANAVT1.754e-2140.31Ycf48-like protein OS=Anabaena variabilis (strain ... [more]
YC48L_ANASP3.907e-2138.28Ycf48-like protein OS=Anabaena sp. (strain PCC 712... [more]
YC48L_SYNP28.703e-2138.93Ycf48-like protein OS=Synechococcus sp. (strain AT... [more]
YC48L_SYNP62.532e-2037.14Ycf48-like protein OS=Synechococcus sp. (strain AT... [more]
YC48L_SYNE72.532e-2037.14Ycf48-like protein OS=Synechococcus elongatus (str... [more]
YC48L_THEEB5.641e-2035.11Ycf48-like protein OS=Thermosynechococcus elongatu... [more]
P2SAF_GUITH8.146e-1934.56Photosystem II stability/assembly factor HCF136, c... [more]

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Properties
Property NameValue
Genbank descriptionC05803B06SK FerrChloL1 Citrus clementina cDNA clone C05803B06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296815 ID=CX296815; Name=CX296815; organism=Citrus clementina; type=EST; length=688bp
CCGAATTCGGCACGAGGCTTTTGCAAATCATCAACGTCCCCGTTGAAACA
AAATGCTTATAGTCACGAATAAGTAATATAAATTTAGTAGTTACAAGCCC
GGTACAAATATCATATCAACGGCATTTTGGTCCCTCTTTACCACATGAAG
ATATAAATAGCTATACAAAATTGCATCATGATATGATGAAAGTGAAGCAA
TTATTTCAGGACACCCATTGTTAGACAATGAAAAATTATGTCAAGGAAAG
TCAAAAATCAAATTTAAATAATTACCGCATGTACAAATTTCAATCTATCC
TAGATATTGAAGCAAGACTCCATCGTTCCCCAATACGAACCCCTTCTTTT
CATTGATGAACTTCACCGAGTAAAGGTTTGCGGCAATGTTGTCTGCTGCT
TTCTCTCGGATCCATGTCTTACCACCATTGGTGGTTTTTAAGAGAACTCC
ACTGCCACCTGCTGCCCAAGCCTCATCCTGTGAACGGTATCCAACATCAA
GAATACCAAAACCCCGACTTTGTACCGGAACTTCTTCAAACTCCTCTGTA
ATCCCTGTGCCCTTGCTGAGAAAAAGTCCCCCTCCCCGAACAAGAAGCCA
AAGACCTCCATCAGCTCTCCATCCCATGTTCTGGATTCTTCTTGCAACTG
CCCTATTATGTGGTTGCCAAAAAGCCTGGCCTGGCTGC
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