CX296815
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX296815 vs. ExPASy Swiss-Prot
Match: P2SAF_ARATH (Photosystem II stability/assembly factor HCF136, chloroplastic OS=Arabidopsis thaliana GN=HCF136 PE=1 SV=1) HSP 1 Score: 212.231 bits (539), Expect = 2.052e-54 Identity = 100/130 (76.92%), Postives = 114/130 (87.69%), Query Frame = -2 Query: 298 QPGQAFWQPHNRAVARRIQNMGWRADXXXXXXXXXXXXXLSKGTGITEEFEEVPVQSRGFGILDVGYRSQDEAWAAGGSGVLLKTTNGGKTWIREKAADNIAANLYSVKFINEKKGFVLGNDGVLLQYLG 687 +PGQ +WQPHNRAVARRIQNMGWRAD LSKGTGITEEFEEVPVQSRGFGILDVGYRS++EAWAAGGSG+LL+T NGGK+W R+KAADNIAANLY+VKF+++KKGFVLGNDGVLL+Y+G Sbjct: 274 EPGQPYWQPHNRAVARRIQNMGWRADGGLWLLVRGGGLYLSKGTGITEEFEEVPVQSRGFGILDVGYRSEEEAWAAGGSGILLRTRNGGKSWNRDKAADNIAANLYAVKFVDDKKGFVLGNDGVLLRYVG 403
BLAST of CX296815 vs. ExPASy Swiss-Prot
Match: P2SAF_ORYSJ (Photosystem II stability/assembly factor HCF136, chloroplastic OS=Oryza sativa subsp. japonica GN=HCF136 PE=3 SV=1) HSP 1 Score: 199.519 bits (506), Expect = 1.377e-50 Identity = 101/152 (66.45%), Postives = 112/152 (73.68%), Query Frame = -2 Query: 298 QPGQAFWQPHNRAVARRIQNMGWRADXXXXXXXXXXXXXLSKGTG----------------------ITEEFEEVPVQSRGFGILDVGYRSQDEAWAAGGSGVLLKTTNGGKTWIREKAADNIAANLYSVKFINEKKGFVLGNDGVLLQYLG 687 +PGQ FWQPHNRAVARRIQNMGWRAD LSKG+G ITE+FEE VQSRGFGILDVGYRS+DEAWAAGGSGVLLKTTNGGKTW+R+KAADNIAANLYSVKF+ + KG+VLGNDGVLL+Y+G Sbjct: 265 EPGQPFWQPHNRAVARRIQNMGWRADGGLWLLVRGGGLFLSKGSGFQFFYRGLNDAHAISYLHPPNQITEDFEEASVQSRGFGILDVGYRSKDEAWAAGGSGVLLKTTNGGKTWVRDKAADNIAANLYSVKFLGDNKGYVLGNDGVLLRYVG 416
BLAST of CX296815 vs. ExPASy Swiss-Prot
Match: YC48L_SYNY3 (Ycf48-like protein OS=Synechocystis sp. (strain PCC 6803) GN=slr2034 PE=3 SV=1) HSP 1 Score: 107.457 bits (267), Expect = 7.120e-23 Identity = 52/128 (40.62%), Postives = 76/128 (59.38%), Query Frame = -2 Query: 304 PGQAFWQPHNRAVARRIQNMGWRADXXXXXXXXXXXXXLSKGTGITEEFEEVPVQSRG-FGILDVGYRSQDEAWAAGGSGVLLKTTNGGKTWIREKAADNIAANLYSVKFINEKKGFVLGNDGVLLQY 684 PGQ W PHNR +RR+Q MG+ D S E + + Q +G +G+LD+ +R+ +E W AG SG LL + +GG+TW ++ ++I ANLY V F++ +KGFVLG DG+LL+Y Sbjct: 205 PGQTEWTPHNRNSSRRLQTMGYGKDGQLWLLARGGQLQFSTDPDAEEWSDVIAPQDKGSWGLLDLSFRTPEEVWVAGASGNLLMSQDGGQTWAKDTGVEDIPANLYRVVFLSPEKGFVLGQDGILLKY 332
BLAST of CX296815 vs. ExPASy Swiss-Prot
Match: YC48L_ANAVT (Ycf48-like protein OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=Ava_1856 PE=3 SV=1) HSP 1 Score: 102.834 bits (255), Expect = 1.754e-21 Identity = 52/129 (40.31%), Postives = 77/129 (59.69%), Query Frame = -2 Query: 304 QPGQAFWQPHNRAVARRIQNMGWRADXXXXXXXXXXXXXLSKGTGITEEFE-EVPVQSRGFGILDVGYRSQDEAWAAGGSGVLLKTTNGGKTWIREKAADNIAANLYSVKFINEKKGFVLGNDGVLLQY 687 +PGQ W PHNR +RR++NMG+ D S T E + + P + +G+LD+ YR+ +E W GGSG LL +T+GGKTW +++ + +AAN Y V F+ +GFV+G+ GVLL+Y Sbjct: 198 EPGQNAWVPHNRNSSRRVENMGFSQDGLWLLARGGQVQF-SDPTKPDEWLDAQTPELATSWGLLDMAYRTPNEVWIGGGSGNLLVSTDGGKTWEKDRDVEEVAANFYKVVFLKPDQGFVIGDRGVLLKY 325
BLAST of CX296815 vs. ExPASy Swiss-Prot
Match: YC48L_ANASP (Ycf48-like protein OS=Anabaena sp. (strain PCC 7120) GN=alr3844 PE=3 SV=1) HSP 1 Score: 101.679 bits (252), Expect = 3.907e-21 Identity = 49/128 (38.28%), Postives = 72/128 (56.25%), Query Frame = -2 Query: 304 QPGQAFWQPHNRAVARRIQNMGWRADXXXXXXXXXXXXXLSKGTGITEEFEEVPVQSRGFGILDVGYRSQDEAWAAGGSGVLLKTTNGGKTWIREKAADNIAANLYSVKFINEKKGFVLGNDGVLLQY 687 + GQ W PHNR +RR++NMG+ D E P + +G+LD+ YR+ +E W GGSG LL +T+GGKTW +++ + +AAN Y V F+ +GFV+G+ GVLL+Y Sbjct: 198 EAGQNAWVPHNRNSSRRVENMGFSQDGLWLLARGGQVQFSDPANPDEWLDAETPELATSWGLLDMAYRTPNEVWIGGGSGNLLVSTDGGKTWEKDRDVEEVAANFYKVVFLKPDQGFVIGDRGVLLKY 325
BLAST of CX296815 vs. ExPASy Swiss-Prot
Match: YC48L_SYNP2 (Ycf48-like protein OS=Synechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6) GN=SYNPCC7002_A0229 PE=3 SV=1) HSP 1 Score: 100.523 bits (249), Expect = 8.703e-21 Identity = 51/131 (38.93%), Postives = 70/131 (53.44%), Query Frame = -2 Query: 304 PGQAFWQPHNRAVARRIQNMGWRADXXXXXXXXXXXXXLSKGTGI--TEEFEE--VPVQSRGFGILDVGYRSQDEAWAAGGSGVLLKTTNGGKTWIREKAADNIAANLYSVKFINEKKGFVLGNDGVLLQY 684 PG W PHNR +RR+Q+MG+ + S T E + E P G+L +GYR+ E WA GGSG ++ + +GG TW R+ A + I N Y V F+NE KGF+LG GV+L+Y Sbjct: 203 PGDTEWTPHNRNSSRRLQSMGFNGEDKLWLLARGGVVQFSDDTNPDNAEAWSEPVTPQYRNSVGLLHIGYRTPAELWAVGGSGSVVVSKDGGDTWFRDAALEEIPTNFYRVVFLNENKGFILGQQGVILRY 333
BLAST of CX296815 vs. ExPASy Swiss-Prot
Match: YC48L_SYNP6 (Ycf48-like protein OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=syc0372_d PE=3 SV=1) HSP 1 Score: 98.9821 bits (245), Expect = 2.532e-20 Identity = 52/140 (37.14%), Postives = 78/140 (55.71%), Query Frame = -2 Query: 304 QPGQAFWQPHNRAVARRIQNMGWRADXXXXXXXXXXXXXLSKGTGITEEFEEV------------PVQSRGFGILDVGYRSQDEAWAAGGSGVLLKTTNGGKTWIREKAADNIAANLYSVKFINEKKGFVLGNDGVLLQY 687 +PG W PH R +RR+Q MG+ D SK + I + +EE+ P ++ G+G LD+ YRS+ E W +GGSG LL + +GG+ W R++ + +NLY++KF K+GFVLG G+LL+Y Sbjct: 205 KPGDTTWTPHQRTSSRRLQLMGFGPDDRTWLIARGGRLQFSKTSQI-DNWEEMLEESDAWGTAIEPERNAGWGFLDLAYRSKQEIWLSGGSGTLLVSEDGGEHWQRDRVIAKLPSNLYTIKFFAPKQGFVLGQRGLLLRY 343
BLAST of CX296815 vs. ExPASy Swiss-Prot
Match: YC48L_SYNE7 (Ycf48-like protein OS=Synechococcus elongatus (strain PCC 7942) GN=Synpcc7942_1178 PE=3 SV=1) HSP 1 Score: 98.9821 bits (245), Expect = 2.532e-20 Identity = 52/140 (37.14%), Postives = 78/140 (55.71%), Query Frame = -2 Query: 304 QPGQAFWQPHNRAVARRIQNMGWRADXXXXXXXXXXXXXLSKGTGITEEFEEV------------PVQSRGFGILDVGYRSQDEAWAAGGSGVLLKTTNGGKTWIREKAADNIAANLYSVKFINEKKGFVLGNDGVLLQY 687 +PG W PH R +RR+Q MG+ D SK + I + +EE+ P ++ G+G LD+ YRS+ E W +GGSG LL + +GG+ W R++ + +NLY++KF K+GFVLG G+LL+Y Sbjct: 205 KPGDTTWTPHQRTSSRRLQLMGFGPDDRTWLIARGGRLQFSKTSQI-DNWEEMLEESDAWGTAIEPERNAGWGFLDLAYRSKQEIWLSGGSGTLLVSEDGGEHWQRDRVIAKLPSNLYTIKFFAPKQGFVLGQRGLLLRY 343
BLAST of CX296815 vs. ExPASy Swiss-Prot
Match: YC48L_THEEB (Ycf48-like protein OS=Thermosynechococcus elongatus (strain BP-1) GN=tll1695 PE=3 SV=1) HSP 1 Score: 97.8265 bits (242), Expect = 5.641e-20 Identity = 46/131 (35.11%), Postives = 74/131 (56.49%), Query Frame = -2 Query: 301 QPGQAFWQPHNRAVARRIQNMGWRADXXXXXXXXXXXXXLSKGTGITEEFEEV--PVQSRGFGILDVGYRSQDEAWAAGGSGVLLKTTNGGKTWIREKAADNIAANLYSVKFINEKKGFVLGNDGVLLQYL 687 +PGQ W+PHNR +RR+ NMG+ D S +E + E+ P++ G LD+ YR+ +E W AGG+G LL + +GG+TW ++ + +N Y + F + +GF+LG G+LL+Y+ Sbjct: 210 EPGQTAWEPHNRTTSRRLHNMGFTPDGRLWMIVNGGKIAFSDPDN-SENWGELLSPLRRNSVGFLDLAYRTPNEVWLAGGAGALLCSQDGGQTWQQDVDVKKVPSNFYKILFFSPDQGFILGQKGILLRYV 339
BLAST of CX296815 vs. ExPASy Swiss-Prot
Match: P2SAF_GUITH (Photosystem II stability/assembly factor HCF136, chloroplastic OS=Guillardia theta GN=hcf136 PE=3 SV=1) HSP 1 Score: 93.9745 bits (232), Expect = 8.146e-19 Identity = 47/136 (34.56%), Postives = 75/136 (55.15%), Query Frame = -2 Query: 304 QPGQAFWQPHNRAVARRIQNMGW-RADXXXXXXXXXXXXXLSKGTGITE-------EFEEVPVQSRGFGILDVGYRSQDEAWAAGGSGVLLKTTNGGKTWIREKAADNIAANLYSVKFINEKKGFVLGNDGVLLQY 687 +PGQ FW P R +RRIQ+MG+ + D LS T + FE + +++ G+GILD + + + W G G++ +T+ GK W + D ++ NLY +KF+N KGF+LG++G+LL+Y Sbjct: 259 EPGQDFWIPRARETSRRIQSMGFIQNDNQKGIWMSTRGGGLSVSTKNFDFESISSFNFENIDIKTGGYGILDAAFVNDKDIWIICGGGIVYNSTDKGKNWTKVDGIDKLSGNLYKIKFVNNNKGFILGSNGLLLRY 394 The following BLAST results are available for this feature:
BLAST of CX296815 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 18
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Sequences
The
following sequences are available for this feature:
EST sequence >CX296815 ID=CX296815; Name=CX296815; organism=Citrus clementina; type=EST; length=688bpback to top |