CX296817

Overview
NameCX296817
Unique NameCX296817
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length713
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX296817 vs. ExPASy Swiss-Prot
Match: CAHC_ARATH (Carbonic anhydrase, chloroplastic OS=Arabidopsis thaliana GN=CA1 PE=1 SV=2)

HSP 1 Score: 282.722 bits (722), Expect = 1.306e-75
Identity = 155/250 (62.00%), Postives = 173/250 (69.20%), Query Frame = 3
Query:    6 MSTSSINNWCLTSVSQAQSSLIKSSTLRPSIVARL------------NSPASPPSLIRNEPVFAAPAPIINPNWREDMANQSYXXXXXXXXXXXXXXXXXXPVAAAKVEQITAQLQT--PSDTKAFDSVERIKEGFIHFKREKYEKNPALYSELAKGQSPKYMVFACSDSRVCPSHVLDFQPGEAFVVRNVANIVPPYDQTKXXXXXXXXXXXXLHLKVSNIVVIGHSACGGIKGLMSFTFDGNNSTDFI 713
            MST+ ++ + LTS+S +QSSL K S    S VA L            +S  S P+LIRNEPVFAAPAPII P W E+M  ++Y                   VAAAKVEQITA LQT   SD KAFD VE IK+GFI FK+EKYE NPALY ELAKGQSPKYMVFACSDSRVCPSHVLDFQPG+AFVVRN+AN+VPP+D+ K            LHLKV NIVVIGHSACGGIKGLMSF  DGNNSTDFI
Sbjct:    1 MSTAPLSGFFLTSLSPSQSSLQKLSLRTSSTVACLPPASSSSSSSSSSSSRSVPTLIRNEPVFAAPAPIIAPYWSEEMGTEAYDEAIEALKKLLIEKEELKTVAAAKVEQITAALQTGTSSDKKAFDPVETIKQGFIKFKKEKYETNPALYGELAKGQSPKYMVFACSDSRVCPSHVLDFQPGDAFVVRNIANMVPPFDKVKYGGVGAAIEYAVLHLKVENIVVIGHSACGGIKGLMSFPLDGNNSTDFI 250          
BLAST of CX296817 vs. ExPASy Swiss-Prot
Match: CAHC_TOBAC (Carbonic anhydrase, chloroplastic OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 275.018 bits (702), Expect = 2.722e-73
Identity = 150/239 (62.76%), Postives = 173/239 (72.38%), Query Frame = 3
Query:    6 MSTSSINNWCLTSVSQAQSSLIKSSTLRPSIVARLN---SPASPPSLIRNEPVFAAPAPIINPNWREDMANQSYXXXXXXXXXXXXXXXXXXPVAAAKVEQITAQLQTPSDTKAFDSVERIKEGFIHFKREKYEKNPALYSELAKGQSPKYMVFACSDSRVCPSHVLDFQPGEAFVVRNVANIVPPYDQTKXXXXXXXXXXXXLHLKVSNIVVIGHSACGGIKGLMSFTFDGNNSTDFI 713
            MST+SIN+ CLT +S AQ+SL K +  RP   ARL+   S  S PSLIRNEPVFAAP PIINP  RE+MA +SY                  P+AAA+V+QITA+LQ+   +K FD VE +K GFIHFK EKYEKNPALY EL+KGQSPK+MVFACSDSRVCPSHVL+FQPGEAFVVRN+AN+VP YD+T+            LHLKV NIVVIGHSACGGIKGLMS   DG+ ST FI
Sbjct:    1 MSTASINS-CLT-ISPAQASLKKPT--RPVAFARLSNSSSSTSVPSLIRNEPVFAAPTPIINPILREEMAKESYEQAIAALEKLLSEKGELGPIAAARVDQITAELQSSDGSKPFDPVEHMKAGFIHFKTEKYEKNPALYGELSKGQSPKFMVFACSDSRVCPSHVLNFQPGEAFVVRNIANMVPAYDKTRYSGVGAAIEYAVLHLKVENIVVIGHSACGGIKGLMSLPADGSESTAFI 235          
BLAST of CX296817 vs. ExPASy Swiss-Prot
Match: CAHC_PEA (Carbonic anhydrase, chloroplastic OS=Pisum sativum PE=1 SV=1)

HSP 1 Score: 263.462 bits (672), Expect = 8.197e-70
Identity = 146/244 (59.84%), Postives = 171/244 (70.08%), Query Frame = 3
Query:    6 MSTSSINNWCLTSVSQAQSSLIKSSTLRPSIVARLNSPASP-----PSLIRNEPVFAAPAPIINPNWREDMANQSYXXXXXXXXXXXXXXXXXXPVAAAKVEQITAQLQTPSDTKAF---DSVERIKEGFIHFKREKYEKNPALYSELAKGQSPKYMVFACSDSRVCPSHVLDFQPGEAFVVRNVANIVPPYDQTKXXXXXXXXXXXXLHLKVSNIVVIGHSACGGIKGLMSFTFDGNNSTDFI 713
            MSTSSIN + L+S+S A++S  K +TLRP + A LN+ +S      PSLI+++PVFA+ +PII P  RE+M  + Y                    AA KVEQITAQL T S +      ++ ERIK GF+HFK+EKY+KNPALY ELAKGQSP +MVFACSDSRVCPSHVLDFQPGEAFVVRNVAN+VPPYDQ K            LHLKVSNIVVIGHSACGGIKGL+SF FDG  STDFI
Sbjct:    1 MSTSSINGFSLSSLSPAKTST-KRTTLRPFVSASLNTSSSSSSSTFPSLIQDKPVFASSSPIITPVLREEMG-KGYDEAIEELQKLLREKTELKATAAEKVEQITAQLGTTSSSDGIPKSEASERIKTGFLHFKKEKYDKNPALYGELAKGQSPPFMVFACSDSRVCPSHVLDFQPGEAFVVRNVANLVPPYDQAKYAGTGAAIEYAVLHLKVSNIVVIGHSACGGIKGLLSFPFDGTYSTDFI 242          
BLAST of CX296817 vs. ExPASy Swiss-Prot
Match: CAHX_FLABR (Carbonic anhydrase OS=Flaveria brownii PE=2 SV=1)

HSP 1 Score: 255.373 bits (651), Expect = 2.232e-67
Identity = 134/225 (59.56%), Postives = 155/225 (68.89%), Query Frame = 3
Query:   39 TSVSQAQSSLIKSSTLRPSIVARLNSPASPPSLIRNEPVFAAPAPIINPNWREDMANQSYXXXXXXXXXXXXXXXXXXPVAAAKVEQITAQLQTPSDTKAFDSVERIKEGFIHFKREKYEKNPALYSELAKGQSPKYMVFACSDSRVCPSHVLDFQPGEAFVVRNVANIVPPYDQTKXXXXXXXXXXXXLHLKVSNIVVIGHSACGGIKGLMSFTFDGNNSTDFI 713
            +S S A+S ++ +     S  +  +S A+PPSLIRNEPVFAAPAPII PNW ED  N+SY                  PVAAA+++QITAQ   P     FD VERIK GF+ FK EK+  NPALY ELAKGQSPK+MVFACSDSRVCPSHVLDFQPGEAFVVRNVAN+VPP+D+TK            LHLKV  I VIGHS CGGIKGLM+F  +G +STDFI
Sbjct:   23 SSTSSARSGVLSAKFTCNS--SSSSSSATPPSLIRNEPVFAAPAPIITPNWTED-GNESYEEAIDALKKMLIEKGELEPVAAARIDQITAQAAAPDTKAPFDPVERIKSGFVKFKTEKFVTNPALYDELAKGQSPKFMVFACSDSRVCPSHVLDFQPGEAFVVRNVANMVPPFDKTKYSGVGAAVEYAVLHLKVQEIFVIGHSRCGGIKGLMTFPDEGPHSTDFI 244          
BLAST of CX296817 vs. ExPASy Swiss-Prot
Match: CAHX_FLABI (Carbonic anhydrase OS=Flaveria bidentis PE=2 SV=2)

HSP 1 Score: 254.988 bits (650), Expect = 2.915e-67
Identity = 134/233 (57.51%), Postives = 155/233 (66.52%), Query Frame = 3
Query:   15 SSINNWCLTSVSQAQSSLIKSSTLRPSIVARLNSPASPPSLIRNEPVFAAPAPIINPNWREDMANQSYXXXXXXXXXXXXXXXXXXPVAAAKVEQITAQLQTPSDTKAFDSVERIKEGFIHFKREKYEKNPALYSELAKGQSPKYMVFACSDSRVCPSHVLDFQPGEAFVVRNVANIVPPYDQTKXXXXXXXXXXXXLHLKVSNIVVIGHSACGGIKGLMSFTFDGNNSTDFI 713
            S +N   L   S +  S + S+    +  +  +S A+PPSLIRNEPVFAAPAPII PNW ED  N+SY                  PVAA +++QITAQ   P     FD VERIK GF+ FK EK+  NPALY ELAKGQSPK+MVFACSDSRVCPSHVLDFQPGEAFVVRNVAN+VPP+D+TK            LHLKV  I VIGHS CGGIKGLM+F  +G +STDFI
Sbjct:   13 SFVNASSLKKASTSARSGVLSARFTCNSSSSSSSSATPPSLIRNEPVFAAPAPIITPNWTED-GNESYEEAIDALKKTLIEKGELEPVAATRIDQITAQAAAPDTKAPFDPVERIKSGFVKFKTEKFVTNPALYDELAKGQSPKFMVFACSDSRVCPSHVLDFQPGEAFVVRNVANMVPPFDKTKYSGVGAAVEYAVLHLKVQEIFVIGHSRCGGIKGLMTFPDEGPHSTDFI 244          
BLAST of CX296817 vs. ExPASy Swiss-Prot
Match: CAH1_FLALI (Carbonic anhydrase 1 OS=Flaveria linearis PE=2 SV=1)

HSP 1 Score: 254.988 bits (650), Expect = 2.915e-67
Identity = 134/225 (59.56%), Postives = 155/225 (68.89%), Query Frame = 3
Query:   39 TSVSQAQSSLIKSSTLRPSIVARLNSPASPPSLIRNEPVFAAPAPIINPNWREDMANQSYXXXXXXXXXXXXXXXXXXPVAAAKVEQITAQLQTPSDTKAFDSVERIKEGFIHFKREKYEKNPALYSELAKGQSPKYMVFACSDSRVCPSHVLDFQPGEAFVVRNVANIVPPYDQTKXXXXXXXXXXXXLHLKVSNIVVIGHSACGGIKGLMSFTFDGNNSTDFI 713
            +S S A+S ++ +     S  +  +S A+PPSLIRNEPVFAAPAPII PNW ED  N+SY                  PVAAA+++QITAQ   P     FD VERIK GF+ FK EK+  NPALY ELAKGQSPK+MVFACSDSRVCPSHVLDFQPGEAFVVRNVAN+VPP+D+TK            LHLKV  I VIGHS CGGIKGLM+F  +G +STDFI
Sbjct:   23 SSTSSARSGVLSARFTCNS--SSSSSSATPPSLIRNEPVFAAPAPIITPNWTED-GNESYEEAIDALKKMLIEKGELEPVAAARIDQITAQAAAPDTKAPFDPVERIKSGFVKFKTEKFVTNPALYDELAKGQSPKFMVFACSDSRVCPSHVLDFQPGEAFVVRNVANMVPPFDKTKYSGVGAAVEYAVLHLKVQEIFVIGHSRCGGIKGLMTFPDEGPHSTDFI 244          
BLAST of CX296817 vs. ExPASy Swiss-Prot
Match: CAHX_FLAPR (Carbonic anhydrase OS=Flaveria pringlei PE=2 SV=1)

HSP 1 Score: 253.447 bits (646), Expect = 8.482e-67
Identity = 138/244 (56.56%), Postives = 158/244 (64.75%), Query Frame = 3
Query:    6 MSTSSINNWCLTSVSQAQSSLIKSSTLRPSIVARL--------NSPASPPSLIRNEPVFAAPAPIINPNWREDMANQSYXXXXXXXXXXXXXXXXXXPVAAAKVEQITAQLQTPSDTKAFDSVERIKEGFIHFKREKYEKNPALYSELAKGQSPKYMVFACSDSRVCPSHVLDFQPGEAFVVRNVANIVPPYDQTKXXXXXXXXXXXXLHLKVSNIVVIGHSACGGIKGLMSFTFDGNNSTDFI 713
            MST+S       S   A S    SS+ R  +++          +S A+PPSLIRNEPVFAAPAPII PNW ED  N+SY                  PVAAA+++QITAQ   P     FD VERIK GF+ FK EK+  NP LY ELAKGQSPK+MVFACSDSRVCPSHVLDFQPGEAFVVRNVAN+VPP+D+TK            LHLKV  I VIGHS CGGIKGLM+F  +G +STDFI
Sbjct:    1 MSTASAFAINAPSFVNASSLKKSSSSARSGVLSARFTCNSSSSSSSATPPSLIRNEPVFAAPAPIITPNWTED-GNESYEEAIDALKKMLIEKGELEPVAAARIDQITAQAAAPDTKAPFDPVERIKSGFVKFKTEKFVTNPVLYDELAKGQSPKFMVFACSDSRVCPSHVLDFQPGEAFVVRNVANMVPPFDKTKYSGVGAAVEYAVLHLKVQEIFVIGHSRCGGIKGLMTFPDEGPHSTDFI 243          
BLAST of CX296817 vs. ExPASy Swiss-Prot
Match: CAHC_SPIOL (Carbonic anhydrase, chloroplastic OS=Spinacia oleracea PE=1 SV=2)

HSP 1 Score: 253.062 bits (645), Expect = 1.108e-66
Identity = 137/232 (59.05%), Postives = 162/232 (69.83%), Query Frame = 3
Query:   27 NWCLTSVSQAQSSLIKSSTLRPSIVA--RLNSPAS-PPSLIRNEPVFAAPAPIINPNWREDMANQSYXXXXXXXXXXXXXXXXXXPVAAAKVEQITAQLQTPSDTKAFDSVERIKEGFIHFKREKYEKNPALYSELAKGQSPKYMVFACSDSRVCPSHVLDFQPGEAFVVRNVANIVPPYDQTKXXXXXXXXXXXXLHLKVSNIVVIGHSACGGIKGLMSFTFDGNNSTDFI 713
            N CLTS+S +++ L  +STLRP+ +A  R+N  +S PPSLIRN+PVFAAPAPII P  +EDMA   Y                    AA+KV QIT++L       A   V+RIKEGFI FK+EKYEKNPALY EL+KGQ+PK+MVFACSDSRVCPSHVLDFQPGEAF+VRN+AN+VP +D+ K            LHLKV NIVVIGHSACGGIKGLMSF   G  +TDFI
Sbjct:    5 NGCLTSISPSRTQLKNTSTLRPTFIANSRVNPSSSVPPSLIRNQPVFAAPAPIITPTLKEDMA---YEEAIAALKKLLSEKGELENEAASKVAQITSELADGGTPSASYPVQRIKEGFIKFKKEKYEKNPALYGELSKGQAPKFMVFACSDSRVCPSHVLDFQPGEAFMVRNIANMVPVFDKDKYAGVGAAIEYAVLHLKVENIVVIGHSACGGIKGLMSFPDAGPTTTDFI 233          
BLAST of CX296817 vs. ExPASy Swiss-Prot
Match: CAH2_ARATH (Carbonic anhydrase 2 OS=Arabidopsis thaliana GN=CA2 PE=1 SV=2)

HSP 1 Score: 226.483 bits (576), Expect = 1.110e-58
Identity = 115/173 (66.47%), Postives = 129/173 (74.57%), Query Frame = 3
Query:  201 MANQSYXXXXXXXXXXXXXXXXXXPVAAAKVEQITAQLQ--TPSDTKAFDSVERIKEGFIHFKREKYEKNPALYSELAKGQSPKYMVFACSDSRVCPSHVLDFQPGEAFVVRNVANIVPPYDQTKXXXXXXXXXXXXLHLKVSNIVVIGHSACGGIKGLMSFTFDGNNSTDFI 713
            M N+SY                   VAAAKV++ITA+LQ  + SD+K+FD VERIKEGF+ FK+EKYE NPALY ELAKGQSPKYMVFACSDSRVCPSHVLDF PG+AFVVRN+AN+VPP+D+ K            LHLKV NIVVIGHSACGGIKGLMSF  DGNNSTDFI
Sbjct:    1 MGNESYEDAIEALKKLLIEKDDLKDVAAAKVKKITAELQAASSSDSKSFDPVERIKEGFVTFKKEKYETNPALYGELAKGQSPKYMVFACSDSRVCPSHVLDFHPGDAFVVRNIANMVPPFDKVKYAGVGAAIEYAVLHLKVENIVVIGHSACGGIKGLMSFPLDGNNSTDFI 173          
BLAST of CX296817 vs. ExPASy Swiss-Prot
Match: CAH2_FLALI (Carbonic anhydrase 2 (Fragment) OS=Flaveria linearis PE=2 SV=1)

HSP 1 Score: 155.992 bits (393), Expect = 1.843e-37
Identity = 74/104 (71.15%), Postives = 81/104 (77.88%), Query Frame = 3
Query:  402 NPALYSELAKGQSPKYMVFACSDSRVCPSHVLDFQPGEAFVVRNVANIVPPYDQTKXXXXXXXXXXXXLHLKVSNIVVIGHSACGGIKGLMSFTFDGNNSTDFI 713
            NP LY ELAKGQSPK++VFACSDSRVCPSH+LDFQPGEAFVVRN+AN+VPPYD  K            LHLKV NIVVIGHS CGGIKGLMS   DG  ++DFI
Sbjct:    1 NPTLYGELAKGQSPKFLVFACSDSRVCPSHILDFQPGEAFVVRNIANMVPPYDTIKHSGAGAAIEYAVLHLKVENIVVIGHSCCGGIKGLMSIPDDGTPASDFI 104          
The following BLAST results are available for this feature:
BLAST of CX296817 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 18
Match NameE-valueIdentityDescription
CAHC_ARATH1.306e-7562.00Carbonic anhydrase, chloroplastic OS=Arabidopsis t... [more]
CAHC_TOBAC2.722e-7362.76Carbonic anhydrase, chloroplastic OS=Nicotiana tab... [more]
CAHC_PEA8.197e-7059.84Carbonic anhydrase, chloroplastic OS=Pisum sativum... [more]
CAHX_FLABR2.232e-6759.56Carbonic anhydrase OS=Flaveria brownii PE=2 SV=1[more]
CAHX_FLABI2.915e-6757.51Carbonic anhydrase OS=Flaveria bidentis PE=2 SV=2[more]
CAH1_FLALI2.915e-6759.56Carbonic anhydrase 1 OS=Flaveria linearis PE=2 SV=... [more]
CAHX_FLAPR8.482e-6756.56Carbonic anhydrase OS=Flaveria pringlei PE=2 SV=1[more]
CAHC_SPIOL1.108e-6659.05Carbonic anhydrase, chloroplastic OS=Spinacia oler... [more]
CAH2_ARATH1.110e-5866.47Carbonic anhydrase 2 OS=Arabidopsis thaliana GN=CA... [more]
CAH2_FLALI1.843e-3771.15Carbonic anhydrase 2 (Fragment) OS=Flaveria linear... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC05803B08SK FerrChloL1 Citrus clementina cDNA clone C05803B08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296817 ID=CX296817; Name=CX296817; organism=Citrus clementina; type=EST; length=713bp
GCACAATGTCGACATCCTCGATCAATAACTGGTGCCTTACTTCTGTTTCT
CAAGCTCAATCCTCTCTCATCAAAAGCTCCACATTACGTCCCTCCATCGT
TGCAAGGCTCAACTCTCCTGCTTCTCCTCCTAGCCTCATCCGAAACGAGC
CCGTTTTTGCTGCACCAGCTCCTATCATCAACCCTAACTGGAGGGAAGAC
ATGGCAAATCAGTCGTACGAGGAAGCCATTGAAGCTCTCAAGAAACTTCT
CAAGGAGAAGGAAGACTTGAAACCTGTTGCTGCTGCAAAAGTAGAGCAGA
TTACTGCGCAGCTACAGACTCCATCTGACACCAAAGCATTTGATTCCGTG
GAGAGGATCAAAGAGGGCTTCATTCACTTCAAGAGAGAAAAATACGAGAA
AAATCCAGCTCTGTACTCTGAGCTCGCCAAAGGCCAAAGCCCGAAGTATA
TGGTATTTGCCTGCTCAGACTCCAGGGTTTGCCCGTCCCATGTGTTGGAT
TTTCAACCTGGGGAAGCTTTCGTGGTTCGCAATGTTGCTAACATTGTTCC
ACCCTATGATCAGACTAAATATGCTGGAGTTGGAGCTGCTGTCGAGTATG
CAGTTTTGCATCTCAAGGTTTCAAACATTGTGGTCATTGGGCACAGCGCC
TGTGGTGGCATCAAAGGACTCATGTCTTTCACATTTGATGGAAACAACTC
CACCGATTTCATT
back to top