CX296827

Overview
NameCX296827
Unique NameCX296827
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length326
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig716 contig Ccv1_Contig716:1..326. BLAST: Citrus Unigene V1 Contigs to Populus V2 proteins
Homology
[Close]
BLAST of CX296827 vs. ExPASy Swiss-Prot
Match: PUB22_ARATH (U-box domain-containing protein 22 OS=Arabidopsis thaliana GN=PUB22 PE=2 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 1.090e-17
Identity = 56/124 (45.16%), Postives = 74/124 (59.68%), Query Frame = 3 
Query:    3 LNEAAKSPHMQIKCLKKLRSIAAENETNKRCLESAGAVEFLASFVTNSNAMEESPEG---------------FDNLHESSRP-VDEALSILCNLKISELGLKSLVMGRNGT-FVDSLTQIMQRG 323
            + E++ S   Q+KCLK+LR I +EN TNKRCLE+A   EFLA+ V+NS     SP                  +N  +SSR  +DEALS+L +L  SE  LKSL+  + GT  V +LT+IMQRG
Sbjct:  102 IKESSSSHLNQVKCLKRLRQIVSENTTNKRCLEAAEVPEFLANIVSNSVDTYNSPSSSLSSSNLNDMCQSNMLENRFDSSRSLMDEALSVLYHLDTSETALKSLLNNKKGTNLVKTLTKIMQRG 225
[Close]
BLAST of CX296827 vs. ExPASy Swiss-Prot
Match: PUB23_ARATH (U-box domain-containing protein 23 OS=Arabidopsis thaliana GN=PUB23 PE=2 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 4.581e-16
Identity = 48/108 (44.44%), Postives = 68/108 (62.96%), Query Frame = 3 
Query:    3 LNEAAKSPHMQIKCLKKLRSIAAENETNKRCLESAGAVEFLASFVTNSNAMEESPEGFDNLHESSRPVDEALSILCNLKISELGLKSLVMG-RNGTFVDSLTQIMQRG 323
            + ++A S   Q+KCLK+LR I +EN TNKRCLE+AG  EFLA+ V+N +             E+    DEAL++L +L+ SE  LK+L+   ++   V SLT+IMQRG
Sbjct:  107 IRDSASSHENQVKCLKRLRQIVSENATNKRCLEAAGVPEFLANIVSNDS-------------ENGSLTDEALNLLYHLETSETVLKNLLNNKKDNNIVKSLTKIMQRG 201
The following BLAST results are available for this feature:
BLAST of CX296827 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
PUB22_ARATH1.090e-1745.16U-box domain-containing protein 22 OS=Arabidopsis ... [more]
PUB23_ARATH4.581e-1644.44U-box domain-containing protein 23 OS=Arabidopsis ... [more]
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Properties
Property NameValue
Genbank descriptionC05803C06SK FerrChloL1 Citrus clementina cDNA clone C05803C06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296827 ID=CX296827; Name=CX296827; organism=Citrus clementina; type=EST; length=326bp
TATTGAATGAAGCAGCTAAGTCTCCTCACATGCAAATCAAGTGCCTTAAG
AAGCTAAGATCAATCGCGGCCGAGAATGAAACTAACAAGCGTTGTTTAGA
ATCTGCCGGAGCGGTTGAGTTCTTGGCTTCATTTGTGACCAACTCCAATG
CTATGGAAGAATCGCCGGAAGGATTTGATAATTTGCATGAGTCAAGTAGA
CCGGTCGATGAAGCCCTAAGCATTCTTTGTAACCTTAAAATTTCGGAATT
AGGGTTGAAGAGTCTTGTTATGGGCAGAAATGGAACGTTTGTGGATTCAT
TAACACAAATCATGCAACGTGGAACC
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