CX296841

Overview
NameCX296841
Unique NameCX296841
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length681
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9817 contig Ccv1_Contig9817:193..872. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX296841 vs. ExPASy Swiss-Prot
Match: DCAM_CATRO (S-adenosylmethionine decarboxylase proenzyme OS=Catharanthus roseus GN=SAMDC PE=1 SV=1)

HSP 1 Score: 169.088 bits (427), Expect = 1.941e-41
Identity = 82/97 (84.54%), Postives = 90/97 (92.78%), Query Frame = 2
Query:  329 MALPVSAIGFEGYEKRLEVSFFEPGVFADPGGRGLRSLSKHQLDEILKPAECTIVSSLSNEYLDSYVLSESSLFVYPYKVIIKTCGTTKLLLSIPAI 619
            MALP SAIGFEGYEKRLE+SFFE   FADP G+GLR+L+K Q+DEIL+PAECTIV SLSN+YLDSYVLSESSLFVYPYK+IIKTCGTTKLLLSIPAI
Sbjct:    1 MALPASAIGFEGYEKRLEISFFESSFFADPDGKGLRALNKSQIDEILEPAECTIVDSLSNQYLDSYVLSESSLFVYPYKIIIKTCGTTKLLLSIPAI 97          
BLAST of CX296841 vs. ExPASy Swiss-Prot
Match: DCAM_NICSY (S-adenosylmethionine decarboxylase proenzyme OS=Nicotiana sylvestris GN=SAMDC1 PE=2 SV=1)

HSP 1 Score: 166.007 bits (419), Expect = 1.643e-40
Identity = 82/97 (84.54%), Postives = 90/97 (92.78%), Query Frame = 2
Query:  329 MALPVSAIGFEGYEKRLEVSFFEPGVFADPGGRGLRSLSKHQLDEILKPAECTIVSSLSNEYLDSYVLSESSLFVYPYKVIIKTCGTTKLLLSIPAI 619
            MALPVSAIGFEG+EKRLE+SFFEPG+FADP G+GLRSLSK QLDEIL PAECTIV SLSN+ +DSYVLSESSLFVY YK+IIKTCGTTKLLL+IP I
Sbjct:    3 MALPVSAIGFEGFEKRLEISFFEPGLFADPNGKGLRSLSKAQLDEILGPAECTIVDSLSNDDVDSYVLSESSLFVYSYKIIIKTCGTTKLLLAIPPI 99          
BLAST of CX296841 vs. ExPASy Swiss-Prot
Match: DCAM_IPONI (S-adenosylmethionine decarboxylase proenzyme OS=Ipomoea nil GN=SAMDC PE=3 SV=1)

HSP 1 Score: 165.622 bits (418), Expect = 2.146e-40
Identity = 81/97 (83.51%), Postives = 89/97 (91.75%), Query Frame = 2
Query:  329 MALPVSAIGFEGYEKRLEVSFFEPGVFADPGGRGLRSLSKHQLDEILKPAECTIVSSLSNEYLDSYVLSESSLFVYPYKVIIKTCGTTKLLLSIPAI 619
            MAL  SAIGFEGYEKRLE+SFFE G+F+DP GRGLR+LSK QLD++LKPAECTIVSSLSN  +DSYVLSESSLFVYPYK+IIKTCGTTKLLLSIP I
Sbjct:    1 MALSTSAIGFEGYEKRLEISFFEAGIFSDPEGRGLRALSKEQLDKVLKPAECTIVSSLSNNEVDSYVLSESSLFVYPYKIIIKTCGTTKLLLSIPPI 97          
BLAST of CX296841 vs. ExPASy Swiss-Prot
Match: DCAM_TOBAC (S-adenosylmethionine decarboxylase proenzyme OS=Nicotiana tabacum GN=SAMDC PE=2 SV=1)

HSP 1 Score: 164.081 bits (414), Expect = 6.244e-40
Identity = 81/96 (84.38%), Postives = 89/96 (92.71%), Query Frame = 2
Query:  332 ALPVSAIGFEGYEKRLEVSFFEPGVFADPGGRGLRSLSKHQLDEILKPAECTIVSSLSNEYLDSYVLSESSLFVYPYKVIIKTCGTTKLLLSIPAI 619
            ALPVSAIGFEG+EKRLE+SFFEPG+FADP G+GLRSLSK QLDEIL PAECTIV SLSN+ +DSYVLSESSLFVY YK+IIKTCGTTKLLL+IP I
Sbjct:    4 ALPVSAIGFEGFEKRLEISFFEPGLFADPNGKGLRSLSKAQLDEILGPAECTIVDSLSNDDVDSYVLSESSLFVYSYKIIIKTCGTTKLLLAIPPI 99          
BLAST of CX296841 vs. ExPASy Swiss-Prot
Match: DCAM_SOLTU (S-adenosylmethionine decarboxylase proenzyme OS=Solanum tuberosum GN=SAMDC PE=1 SV=1)

HSP 1 Score: 164.081 bits (414), Expect = 6.244e-40
Identity = 80/98 (81.63%), Postives = 90/98 (91.84%), Query Frame = 2
Query:  326 KMALPVSAIGFEGYEKRLEVSFFEPGVFADPGGRGLRSLSKHQLDEILKPAECTIVSSLSNEYLDSYVLSESSLFVYPYKVIIKTCGTTKLLLSIPAI 619
            +M LPVSAIGFEG+EKRLE+SF EPG+FADP G+GLRSLSK QLDEIL PAECTIV +LSN+Y+DSYVLSESSLFVY YK+IIKTCGTTKLLL+IP I
Sbjct:    2 EMDLPVSAIGFEGFEKRLEISFVEPGLFADPNGKGLRSLSKAQLDEILGPAECTIVDNLSNDYVDSYVLSESSLFVYSYKIIIKTCGTTKLLLAIPPI 99          
BLAST of CX296841 vs. ExPASy Swiss-Prot
Match: DCAM_IPOBA (S-adenosylmethionine decarboxylase proenzyme OS=Ipomoea batatas GN=SAMDC PE=2 SV=1)

HSP 1 Score: 163.696 bits (413), Expect = 8.155e-40
Identity = 80/97 (82.47%), Postives = 88/97 (90.72%), Query Frame = 2
Query:  329 MALPVSAIGFEGYEKRLEVSFFEPGVFADPGGRGLRSLSKHQLDEILKPAECTIVSSLSNEYLDSYVLSESSLFVYPYKVIIKTCGTTKLLLSIPAI 619
            MAL  SAIGFEGYE RLE+SFFE G+F+DP GRGLR+LSK QLD++LKPAECTIVSSLSN  +DSYVLSESSLFVYPYK+IIKTCGTTKLLLSIP I
Sbjct:    1 MALSTSAIGFEGYENRLEISFFEAGIFSDPEGRGLRALSKEQLDKVLKPAECTIVSSLSNNEVDSYVLSESSLFVYPYKIIIKTCGTTKLLLSIPPI 97          
BLAST of CX296841 vs. ExPASy Swiss-Prot
Match: DCAM_DATST (S-adenosylmethionine decarboxylase proenzyme OS=Datura stramonium GN=SAMDC PE=2 SV=1)

HSP 1 Score: 162.925 bits (411), Expect = 1.391e-39
Identity = 79/98 (80.61%), Postives = 90/98 (91.84%), Query Frame = 2
Query:  326 KMALPVSAIGFEGYEKRLEVSFFEPGVFADPGGRGLRSLSKHQLDEILKPAECTIVSSLSNEYLDSYVLSESSLFVYPYKVIIKTCGTTKLLLSIPAI 619
            +M LPVSAIGFEG+EKRLE+SF EPG+F+DP G+GLRSLSK QLDEIL PAECTIV +LSN+Y+DSYVLSESSLFVY YK+IIKTCGTTKLLL+IP I
Sbjct:    2 EMDLPVSAIGFEGFEKRLEISFVEPGLFSDPNGKGLRSLSKAQLDEILGPAECTIVDNLSNDYVDSYVLSESSLFVYSYKIIIKTCGTTKLLLAIPPI 99          
BLAST of CX296841 vs. ExPASy Swiss-Prot
Match: DCAM_SOLCI (S-adenosylmethionine decarboxylase proenzyme OS=Solanum chilense GN=SAMDC PE=2 SV=1)

HSP 1 Score: 162.54 bits (410), Expect = 1.817e-39
Identity = 79/97 (81.44%), Postives = 89/97 (91.75%), Query Frame = 2
Query:  329 MALPVSAIGFEGYEKRLEVSFFEPGVFADPGGRGLRSLSKHQLDEILKPAECTIVSSLSNEYLDSYVLSESSLFVYPYKVIIKTCGTTKLLLSIPAI 619
            M LPVSAIGFEG+EKRLE+SF EPG+FADP G+GLRSL+K QLDEIL PAECTIV +LSN+Y+DSYVLSESSLFVY YK+IIKTCGTTKLLL+IP I
Sbjct:    1 MDLPVSAIGFEGFEKRLEISFVEPGLFADPNGKGLRSLTKAQLDEILGPAECTIVDNLSNDYVDSYVLSESSLFVYSYKIIIKTCGTTKLLLAIPPI 97          
BLAST of CX296841 vs. ExPASy Swiss-Prot
Match: DCAM_PEA (S-adenosylmethionine decarboxylase proenzyme OS=Pisum sativum GN=SAMDC PE=2 SV=1)

HSP 1 Score: 155.221 bits (391), Expect = 2.900e-37
Identity = 77/95 (81.05%), Postives = 87/95 (91.58%), Query Frame = 2
Query:  335 LPVSAIGFEGYEKRLEVSFFEPGVFADPGGRGLRSLSKHQLDEILKPAECTIVSSLSNEYLDSYVLSESSLFVYPYKVIIKTCGTTKLLLSIPAI 619
            + VSAIGFEG+EKRLE+SF +PG+F+DP GRGLRSL+K QLDEIL PAECTIVSSL+NE +DSYVLSESSLFVY YK+IIKTCGTTKLLLSIP I
Sbjct:    1 MAVSAIGFEGFEKRLEISFSDPGLFSDPQGRGLRSLTKSQLDEILAPAECTIVSSLANEDVDSYVLSESSLFVYAYKLIIKTCGTTKLLLSIPPI 95          
BLAST of CX296841 vs. ExPASy Swiss-Prot
Match: DCAM_DAUCA (S-adenosylmethionine decarboxylase proenzyme OS=Daucus carota GN=SAMDC PE=2 SV=1)

HSP 1 Score: 155.221 bits (391), Expect = 2.900e-37
Identity = 77/97 (79.38%), Postives = 86/97 (88.66%), Query Frame = 2
Query:  329 MALPVSAIGFEGYEKRLEVSFFEPGVFADPGGRGLRSLSKHQLDEILKPAECTIVSSLSNEYLDSYVLSESSLFVYPYKVIIKTCGTTKLLLSIPAI 619
            M+  VSAIGFEG+EKRLE+SFFEP  FADP G+GLR LSK+QLDE L PAECTIV+SLSNE++DSYVLSESSLFVY YK+IIKTCGTTKLL SIP I
Sbjct:    1 MSSEVSAIGFEGFEKRLEISFFEPSFFADPEGKGLRVLSKNQLDEFLGPAECTIVASLSNEHVDSYVLSESSLFVYAYKIIIKTCGTTKLLKSIPPI 97          
The following BLAST results are available for this feature:
BLAST of CX296841 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 37
Match NameE-valueIdentityDescription
DCAM_CATRO1.941e-4184.54S-adenosylmethionine decarboxylase proenzyme OS=Ca... [more]
DCAM_NICSY1.643e-4084.54S-adenosylmethionine decarboxylase proenzyme OS=Ni... [more]
DCAM_IPONI2.146e-4083.51S-adenosylmethionine decarboxylase proenzyme OS=Ip... [more]
DCAM_TOBAC6.244e-4084.38S-adenosylmethionine decarboxylase proenzyme OS=Ni... [more]
DCAM_SOLTU6.244e-4081.63S-adenosylmethionine decarboxylase proenzyme OS=So... [more]
DCAM_IPOBA8.155e-4082.47S-adenosylmethionine decarboxylase proenzyme OS=Ip... [more]
DCAM_DATST1.391e-3980.61S-adenosylmethionine decarboxylase proenzyme OS=Da... [more]
DCAM_SOLCI1.817e-3981.44S-adenosylmethionine decarboxylase proenzyme OS=So... [more]
DCAM_PEA2.900e-3781.05S-adenosylmethionine decarboxylase proenzyme OS=Pi... [more]
DCAM_DAUCA2.900e-3779.38S-adenosylmethionine decarboxylase proenzyme OS=Da... [more]

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Properties
Property NameValue
Genbank descriptionC05803D08SK FerrChloL1 Citrus clementina cDNA clone C05803D08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296841 ID=CX296841; Name=CX296841; organism=Citrus clementina; type=EST; length=681bp
GCCGAATTCGGCACGAGGTCTAGCAGTAGCTCCTTATTCTACGAAGCTCC
TCTTGGTTACAGCATTGAAGACGTTCGACCTCACGGTGGCATAAAGAAGT
TCAGATCAGCTGCTTACTCAAACTGCGTCCGCAAACCATCCTGAGATCGT
CCAATTTGTCCCATACCCCCCCAAAAAAAAGCTCACTACTACTGCAATTT
TAATTTTTTTTAGTTTTAGCCGTCTTAATACTGCAATTTACTTGGCCTAT
TTCTTTTTCGACTTCCCTCGTTCTCTCGTTCTGCCCTCTTTGCTCTTTGC
AATTGTCATTTGTTTTCTGTAAGGCAAGATGGCCTTGCCAGTCTCTGCAA
TTGGATTTGAAGGTTATGAAAAGAGGCTTGAAGTTTCCTTTTTTGAGCCT
GGTGTCTTTGCTGATCCTGGAGGTAGGGGCCTCCGCTCTCTGTCAAAACA
TCAATTGGATGAAATACTGAAACCTGCGGAATGCACAATTGTTTCTTCGT
TGTCAAATGAATATCTTGATTCATATGTCCTCTCAGAATCAAGCCTCTTT
GTGTACCCTTACAAAGTTATTATCAAAACTTGTGGGACTACCAAGCTGCT
TCTTTCAATCCCTGCCATCCTCAAGTTATCTGAGTCCCTCTCGTTGCTGT
CGATCTGGAATACACTCCGAGCTCATATTGT
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