CX296875

Overview
NameCX296875
Unique NameCX296875
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length745
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig13299 contig Ccv1_Contig13299:531..1275. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX296875 vs. ExPASy Swiss-Prot
Match: CAF1K_ARATH (Probable CCR4-associated factor 1 homolog 11 OS=Arabidopsis thaliana GN=CAF1-11 PE=2 SV=1)

HSP 1 Score: 355.14 bits (910), Expect = 2.255e-97
Identity = 172/221 (77.83%), Postives = 193/221 (87.33%), Query Frame = -2
Query:   52 RQRKPSDHYKVLKSNVDALNLIQVGLTLSDSSGNLPDLGSGGNNKFIWEFNFRDFDIATDAHAPDSIELLRLQGIDFERNRKEGVDSVRFAELMMSSGLVCNESVSWVTFHSAYDFGYLVKILTRRSLPSGLDEFLTILRVFFGNNIYDVKHIMRFC-QSLYGGLDRVARTLDVSRAVGKCHQAGSDSLLTWHAFQKIRDVYFVHDGPEKHAGVLYGLEVY 711
            R+  P+  Y +LKSNVDAL+LIQVGLTLSD+ GNLPDLG   N ++IWEFNFRDFD+  D HAPDSIELLR  GIDFERNR+EGV+S RFAELMMSSGL+CNESVSWVTFHSAYDFGYLVKILTRR LP  L EFL +LR FFG+ +YDVKHIMRFC Q LYGGLDRVAR+L+V+RAVGKCHQAGSDSLLTW AFQ++RD+YFV DG EKHAGVLYGLEV+
Sbjct:   58 RRGNPNYLYNLLKSNVDALSLIQVGLTLSDADGNLPDLGGQKNRRYIWEFNFRDFDVERDPHAPDSIELLRRHGIDFERNRREGVESERFAELMMSSGLICNESVSWVTFHSAYDFGYLVKILTRRQLPVALREFLGLLRAFFGDRVYDVKHIMRFCEQRLYGGLDRVARSLEVNRAVGKCHQAGSDSLLTWQAFQRMRDLYFVEDGAEKHAGVLYGLEVF 278          
BLAST of CX296875 vs. ExPASy Swiss-Prot
Match: CAF1I_ARATH (Probable CCR4-associated factor 1 homolog 9 OS=Arabidopsis thaliana GN=CAF1-9 PE=2 SV=1)

HSP 1 Score: 351.673 bits (901), Expect = 2.493e-96
Identity = 169/221 (76.47%), Postives = 192/221 (86.88%), Query Frame = -2
Query:   52 RQRKPSDHYKVLKSNVDALNLIQVGLTLSDSSGNLPDLGSGGNNKFIWEFNFRDFDIATDAHAPDSIELLRLQGIDFERNRKEGVDSVRFAELMMSSGLVCNESVSWVTFHSAYDFGYLVKILTRRSLPSGLDEFLTILRVFFGNNIYDVKHIMRFCQ-SLYGGLDRVARTLDVSRAVGKCHQAGSDSLLTWHAFQKIRDVYFVHDGPEKHAGVLYGLEVY 711
            R   P D Y +LK+NVDAL+LIQVGLTLSD +GNLPDLG   +  FIWEFNFRDFD+A DAHAPDSIELLR QGIDFERN ++GV+S RFAELMMSSGLVCNE VSWVTFHSAYDFGYL+KILTRR LP  L EF  ++RV FG  +YDVKH+M+FC+  L+GGLDRVARTL+V+RAVGKCHQAGSDSLLTWHAFQ++RD+YFV DGPEKHAGVLYGLEV+
Sbjct:   60 RFTNPDDLYTLLKANVDALSLIQVGLTLSDVNGNLPDLGDDLHRGFIWEFNFRDFDVARDAHAPDSIELLRRQGIDFERNCRDGVESERFAELMMSSGLVCNEEVSWVTFHSAYDFGYLMKILTRRELPGALGEFKRVMRVLFGERVYDVKHMMKFCERRLFGGLDRVARTLEVNRAVGKCHQAGSDSLLTWHAFQRMRDLYFVQDGPEKHAGVLYGLEVF 280          
BLAST of CX296875 vs. ExPASy Swiss-Prot
Match: CAF1G_ARATH (Probable CCR4-associated factor 1 homolog 7 OS=Arabidopsis thaliana GN=CAF1-7 PE=2 SV=2)

HSP 1 Score: 240.35 bits (612), Expect = 8.096e-63
Identity = 121/213 (56.81%), Postives = 163/213 (76.53%), Query Frame = -2
Query:   55 HYKVLKSNVDALNLIQVGLTLSDSSGNLPDLGSGGNNKF-IWEFNFRDFDIATDAHAPDSIELLRLQGIDFERNRKEGVDSVRFAELMMSSGLVCNESVSWVTFHSAYDFGYLVKILTRRSLPSGLDEFLTILRVFFGNNIYDVKHIMRFCQSLYGGLDRVARTLDVSRAVGKCHQAGSDSLLTWHAFQKIRDVYFVHDGPEKHAGVLYGLEV 690
            HY+ LK+NV+ L +IQ+GLT SD  GNLP  G+  +NK+ IW+FNFR+FD+ +D +A DSIELLR  GIDF +N + G+DS RFAEL+MSSG+V NE+V WVTFHS YDFGYL+K+LT ++LP     F  ++ V+F   +YD+KH+M+FC SL+GGL+++A  LDV R VG CHQAGSDSLLT   F+K+++ +F+    EK++GVLYGL V
Sbjct:   61 HYETLKTNVNILKMIQLGLTFSDEKGNLPTCGT--DNKYCIWQFNFREFDLESDIYATDSIELLRQSGIDFVKNNEFGIDSKRFAELLMSSGIVLNENVHWVTFHSGYDFGYLLKLLTCQNLPETQTGFFEMISVYF-PRVYDIKHLMKFCNSLHGGLNKLAELLDVER-VGICHQAGSDSLLTSCTFRKLQENFFI-GSMEKYSGVLYGLGV 268          
BLAST of CX296875 vs. ExPASy Swiss-Prot
Match: CAF1J_ARATH (Probable CCR4-associated factor 1 homolog 10 OS=Arabidopsis thaliana GN=CAF1-10 PE=2 SV=1)

HSP 1 Score: 234.958 bits (598), Expect = 3.401e-61
Identity = 121/213 (56.81%), Postives = 158/213 (74.18%), Query Frame = -2
Query:   55 HYKVLKSNVDALNLIQVGLTLSDSSGNLPDLGSGGNNKF-IWEFNFRDFDIATDAHAPDSIELLRLQGIDFERNRKEGVDSVRFAELMMSSGLVCNESVSWVTFHSAYDFGYLVKILTRRSLPSGLDEFLTILRVFFGNNIYDVKHIMRFCQSLYGGLDRVARTLDVSRAVGKCHQAGSDSLLTWHAFQKIRDVYFVHDGPEKHAGVLYGLEV 690
            +Y+ LK NVD L LIQVGLT SD +GNLP  G+   +KF IW+FNFR+F+I  D +A +SIELLR  GIDF++N ++G+D VRF ELMMSSG+V N+++SWVTFH  YDFGYLVK+LT + LP    +F  +L V+F   +YD+KH+M FC  L+GGL+R+A  + V R VG CHQAGSDSLLT  +F+K+++ YF     EK+ GVLYGL V
Sbjct:   61 NYRTLKENVDLLKLIQVGLTFSDENGNLPTCGT---DKFCIWQFNFREFNIGEDIYASESIELLRQCGIDFKKNIEKGIDVVRFGELMMSSGIVLNDAISWVTFHGGYDFGYLVKLLTCKELPLKQADFFKLLYVYF-PTVYDIKHLMTFCNGLFGGLNRLAELMGVER-VGICHQAGSDSLLTLGSFRKLKERYF-PGSTEKYTGVLYGLGV 267          
BLAST of CX296875 vs. ExPASy Swiss-Prot
Match: CAF1F_ARATH (Probable CCR4-associated factor 1 homolog 6 OS=Arabidopsis thaliana GN=CAF1-6 PE=2 SV=1)

HSP 1 Score: 232.646 bits (592), Expect = 1.688e-60
Identity = 117/213 (54.93%), Postives = 160/213 (75.12%), Query Frame = -2
Query:   55 HYKVLKSNVDALNLIQVGLTLSDSSGNLPDLGSGGNNKFIWEFNFRDFDIATDAHAPDSIELLRLQGIDFERNRKEGVDSVRFAELMMSSGLVCNESVSWVTFHSAYDFGYLVKILTRRSLPSGLDEFLTILRVFFGNNIYDVKHIMRFCQSLYGGLDRVARTLDVSRAVGKCHQAGSDSLLTWHAFQKIRDVYFVHDGP-EKHAGVLYGLEV 690
            HY+ LK+NV+ L +IQ+GLT S+  GNLP  G+  +   IW+FNFR+FD+ +D  A DSIELL+  GID  +N  +G+DS RFAEL+MSSG+V NE+V WVTFHS YDFGYL+K+LT ++LP    +F  ++ V+F   +YD+KH+M+FC SL+GGL+++A  L+V R VG CHQAGSDSLLT   F+K+++ +FV  GP  K++GVLYGL V
Sbjct:   61 HYETLKTNVNILKMIQLGLTFSNEQGNLPTCGT--DKYCIWQFNFREFDLDSDIFALDSIELLKQSGIDLAKNTLDGIDSKRFAELLMSSGIVLNENVHWVTFHSGYDFGYLLKLLTCQNLPDSQTDFFKLINVYF-PTVYDIKHLMKFCNSLHGGLNKLAELLEVER-VGICHQAGSDSLLTSCTFRKLKENFFV--GPLHKYSGVLYGLGV 267          
BLAST of CX296875 vs. ExPASy Swiss-Prot
Match: CAF1B_ARATH (Probable CCR4-associated factor 1 homolog 2 OS=Arabidopsis thaliana GN=CAF1-2 PE=2 SV=1)

HSP 1 Score: 210.305 bits (534), Expect = 8.972e-54
Identity = 107/211 (50.71%), Postives = 148/211 (70.14%), Query Frame = -2
Query:   58 HYKVLKSNVDALNLIQVGLTLSDSSGNLPDLGSGGNNKFIWEFNFRDFDIATDAHAPDSIELLRLQGIDFERNRKEGVDSVRFAELMMSSGLVCNESVSWVTFHSAYDFGYLVKILTRRSLPSGLDEFLTILRVFFGNNIYDVKHIMRFCQSLYGGLDRVARTLDVSRAVGKCHQAGSDSLLTWHAFQKIRDVYFVHDGPEKHAGVLYGLE 690
            +Y  LK+NV+ L LIQ+GLTLSD  GNLP  G+  N + IW+FNFR+F++ +D  A DSIELLR   ID E+N + GVD+ RFAEL+M SG+V N+ + WVTFH  YDFGYL+K+L+ + LP  + +F   +  FF   +YD+K++M FC +LYGGL+++A  L V R VG  HQAGSDSLLT   F K+++ +F      K++G L+GL+
Sbjct:   71 NYDTLKANVNMLKLIQLGLTLSDEKGNLPTCGT--NKQCIWQFNFREFNVISDMFALDSIELLRKSAIDLEKNNECGVDAKRFAELLMGSGVVLNDKIHWVTFHCGYDFGYLLKLLSGKELPEEISDFFDQMEKFF-PVVYDIKYLMGFCTNLYGGLEKIAELLGVKR-VGISHQAGSDSLLTLRTFIKMKEFFFT-GSLLKYSGFLFGLD 276          
BLAST of CX296875 vs. ExPASy Swiss-Prot
Match: CNOT7_XENLA (CCR4-NOT transcription complex subunit 7 OS=Xenopus laevis GN=cnot7 PE=2 SV=1)

HSP 1 Score: 186.808 bits (473), Expect = 1.062e-46
Identity = 102/210 (48.57%), Postives = 141/210 (67.14%), Query Frame = -2
Query:   61 YKVLKSNVDALNLIQVGLTLSDSSGNLPDLGSGGNNKFIWEFNFRDFDIATDAHAPDSIELLRLQGIDFERNRKEGVDSVRFAELMMSSGLVCNESVSWVTFHSAYDFGYLVKILTRRSLPSGLDEFLTILRVFFGNNIYDVKHIMRFCQSLYGGLDRVARTLDVSRAVGKCHQAGSDSLLTWHAFQKIRDVYFV-HDGPEKHAGVLYGL 687
            Y++L+ NVD L +IQ+GLT  +  G  P   S       W+FNF+ F++  D +A DSIELL   GI F+++ +EG+++  FAEL M+SG+V  E V W++FHS YDFGYL+KILT  +LP    +F  ILR+FF   IYDVK++M+ C++L GGL  VA  L++ R +G  HQAGSDSLLT  AF K+R+++F  H    K+ G LYGL
Sbjct:   62 YQLLRCNVDLLKIIQLGLTFMNEQGEYPPGTS------TWQFNFK-FNLTEDMYAQDSIELLTSSGIQFKKHEEEGIETQYFAELFMTSGVVLCEGVKWLSFHSGYDFGYLIKILTNSNLPEVEQDFFEILRLFF-PVIYDVKYLMKSCKNLKGGLQEVAEQLELER-IGPQHQAGSDSLLTGMAFFKMREMFFEDHIDDAKYCGHLYGL 262          
BLAST of CX296875 vs. ExPASy Swiss-Prot
Match: CNOT7_MOUSE (CCR4-NOT transcription complex subunit 7 OS=Mus musculus GN=Cnot7 PE=1 SV=1)

HSP 1 Score: 186.808 bits (473), Expect = 1.062e-46
Identity = 102/210 (48.57%), Postives = 142/210 (67.62%), Query Frame = -2
Query:   61 YKVLKSNVDALNLIQVGLTLSDSSGNLPDLGSGGNNKFIWEFNFRDFDIATDAHAPDSIELLRLQGIDFERNRKEGVDSVRFAELMMSSGLVCNESVSWVTFHSAYDFGYLVKILTRRSLPSGLDEFLTILRVFFGNNIYDVKHIMRFCQSLYGGLDRVARTLDVSRAVGKCHQAGSDSLLTWHAFQKIRDVYFV-HDGPEKHAGVLYGL 687
            Y++L+ NVD L +IQ+GLT  +  G  P   S       W+FNF+ F++  D +A DSIELL   GI F+++ +EG+++  FAEL+M+SG+V  E V W++FHS YDFGYL+KILT  +LP    +F  ILR+FF   IYDVK++M+ C++L GGL  VA  L++ R +G  HQAGSDSLLT  AF K+R+++F  H    K+ G LYGL
Sbjct:   62 YQLLRCNVDLLKIIQLGLTFMNEQGEYPPGTS------TWQFNFK-FNLTEDMYAQDSIELLTTSGIQFKKHEEEGIETQYFAELLMTSGVVLCEGVKWLSFHSGYDFGYLIKILTNSNLPEEELDFFEILRLFF-PVIYDVKYLMKSCKNLKGGLQEVAEQLELER-IGPQHQAGSDSLLTGMAFFKMREMFFEDHIDDAKYCGHLYGL 262          
BLAST of CX296875 vs. ExPASy Swiss-Prot
Match: CNOT7_HUMAN (CCR4-NOT transcription complex subunit 7 OS=Homo sapiens GN=CNOT7 PE=1 SV=3)

HSP 1 Score: 186.808 bits (473), Expect = 1.062e-46
Identity = 102/210 (48.57%), Postives = 142/210 (67.62%), Query Frame = -2
Query:   61 YKVLKSNVDALNLIQVGLTLSDSSGNLPDLGSGGNNKFIWEFNFRDFDIATDAHAPDSIELLRLQGIDFERNRKEGVDSVRFAELMMSSGLVCNESVSWVTFHSAYDFGYLVKILTRRSLPSGLDEFLTILRVFFGNNIYDVKHIMRFCQSLYGGLDRVARTLDVSRAVGKCHQAGSDSLLTWHAFQKIRDVYFV-HDGPEKHAGVLYGL 687
            Y++L+ NVD L +IQ+GLT  +  G  P   S       W+FNF+ F++  D +A DSIELL   GI F+++ +EG+++  FAEL+M+SG+V  E V W++FHS YDFGYL+KILT  +LP    +F  ILR+FF   IYDVK++M+ C++L GGL  VA  L++ R +G  HQAGSDSLLT  AF K+R+++F  H    K+ G LYGL
Sbjct:   62 YQLLRCNVDLLKIIQLGLTFMNEQGEYPPGTS------TWQFNFK-FNLTEDMYAQDSIELLTTSGIQFKKHEEEGIETQYFAELLMTSGVVLCEGVKWLSFHSGYDFGYLIKILTNSNLPEEELDFFEILRLFF-PVIYDVKYLMKSCKNLKGGLQEVAEQLELER-IGPQHQAGSDSLLTGMAFFKMREMFFEDHIDDAKYCGHLYGL 262          
BLAST of CX296875 vs. ExPASy Swiss-Prot
Match: CNOT7_CHICK (CCR4-NOT transcription complex subunit 7 OS=Gallus gallus GN=CNOT7 PE=2 SV=1)

HSP 1 Score: 186.808 bits (473), Expect = 1.062e-46
Identity = 102/210 (48.57%), Postives = 142/210 (67.62%), Query Frame = -2
Query:   61 YKVLKSNVDALNLIQVGLTLSDSSGNLPDLGSGGNNKFIWEFNFRDFDIATDAHAPDSIELLRLQGIDFERNRKEGVDSVRFAELMMSSGLVCNESVSWVTFHSAYDFGYLVKILTRRSLPSGLDEFLTILRVFFGNNIYDVKHIMRFCQSLYGGLDRVARTLDVSRAVGKCHQAGSDSLLTWHAFQKIRDVYFV-HDGPEKHAGVLYGL 687
            Y++L+ NVD L +IQ+GLT  +  G  P   S       W+FNF+ F++  D +A DSIELL   GI F+++ +EG+++  FAEL+M+SG+V  E V W++FHS YDFGYL+KILT  +LP    +F  ILR+FF   IYDVK++M+ C++L GGL  VA  L++ R +G  HQAGSDSLLT  AF K+R+++F  H    K+ G LYGL
Sbjct:   62 YQLLRCNVDLLKIIQLGLTFMNEQGEYPPGTS------TWQFNFK-FNLTEDMYAQDSIELLTTSGIQFKKHEEEGIETQYFAELLMTSGVVLCEGVKWLSFHSGYDFGYLIKILTNSNLPEEELDFFEILRLFF-PVIYDVKYLMKSCKNLKGGLQEVAEQLELER-IGPQHQAGSDSLLTGMAFFKMREMFFEDHIDDAKYCGHLYGL 262          
The following BLAST results are available for this feature:
BLAST of CX296875 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 23
Match NameE-valueIdentityDescription
CAF1K_ARATH2.255e-9777.83Probable CCR4-associated factor 1 homolog 11 OS=Ar... [more]
CAF1I_ARATH2.493e-9676.47Probable CCR4-associated factor 1 homolog 9 OS=Ara... [more]
CAF1G_ARATH8.096e-6356.81Probable CCR4-associated factor 1 homolog 7 OS=Ara... [more]
CAF1J_ARATH3.401e-6156.81Probable CCR4-associated factor 1 homolog 10 OS=Ar... [more]
CAF1F_ARATH1.688e-6054.93Probable CCR4-associated factor 1 homolog 6 OS=Ara... [more]
CAF1B_ARATH8.972e-5450.71Probable CCR4-associated factor 1 homolog 2 OS=Ara... [more]
CNOT7_XENLA1.062e-4648.57CCR4-NOT transcription complex subunit 7 OS=Xenopu... [more]
CNOT7_MOUSE1.062e-4648.57CCR4-NOT transcription complex subunit 7 OS=Mus mu... [more]
CNOT7_HUMAN1.062e-4648.57CCR4-NOT transcription complex subunit 7 OS=Homo s... [more]
CNOT7_CHICK1.062e-4648.57CCR4-NOT transcription complex subunit 7 OS=Gallus... [more]

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Properties
Property NameValue
Genbank descriptionC05803G08SK FerrChloL1 Citrus clementina cDNA clone C05803G08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296875 ID=CX296875; Name=CX296875; organism=Citrus clementina; type=EST; length=745bp
GATTCGGCCGAGGCCTCGTGCCGAATTCGGCACGAGGCAAAATTAAATTT
AGTACACTTCTAGTCCATACAATACGCCGGCATGTTTCTCCGGTCCGTCA
TGGACGAAATACACATCCCTAATTTTTTGAAAGGCATGCCAGGTCAGAAG
GCTATCCGAACCGGCCTGGTGGCACTTCCCGACCGCCCGGCTCACATCCA
ACGTCCGAGCCACTCGGTCCAAACCACCGTACAAGCTCTGACAGAACCGC
ATAATGTGTTTGACGTCATAAATATTGTTACCGAAAAACACCCTGAGGAT
CGTCAAGAACTCGTCTAGGCCACTGGGCAAGCTCCGGCGCGTGAGGATCT
TAACCAGGTACCCGAAATCGTACGCGCTGTGGAACGTGACCCAACTCACC
GATTCGTTACAGACGAGTCCCGACGACATCATCAACTCGGCGAACCGAAC
CGAGTCAACGCCTTCCTTCCTGTTGCGCTCAAAGTCAATCCCCTGCAGTC
TCAGCAGCTCTATCGAATCCGGCGCGTGGGCGTCCGTCGCGATATCGAAG
TCCCGGAAGTTGAACTCCCAGATGAATTTATTGTTGCCCCCGGAGCCCAA
ATCCGGCAAGTTACCGGAAGAGTCAGAGAGAGTGAGGCCCACCTGGATCA
AGTTCAAGGCGTCGACGTTGGATTTCAGAACCTTGTAGTGATCGGACGGC
TTGCGTTGACGGAAGTAGGCCTGGTGGAGGGGTCACATCGGGTCG
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