CX296881

Overview
NameCX296881
Unique NameCX296881
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length484
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15331 contig Ccv1_Contig15331:236..719. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX296881 vs. ExPASy Swiss-Prot
Match: EF103_ARATH (Ethylene-responsive transcription factor 6 OS=Arabidopsis thaliana GN=ERF6 PE=2 SV=2)

HSP 1 Score: 87.8113 bits (216), Expect = 2.723e-17
Identity = 53/136 (38.97%), Postives = 69/136 (50.74%), Query Frame = 1
Query:   10 FFDYESKPQIIDLVTPQPTNTCSELTNDFFEFDIRPQIQSQPSNCSSEFEXXXXXXXXXXXXXXXXXXXXXXVPKKAEGHHFTN-----RXXXXXXXXXXXXHYRGVRRRPWGKYAAEIRDPTRRGVRVWLGTFDT 402
            F ++E+KP+IIDLVTP+P         + F+FD++ +I S+ SN S  F+                       P + +   F                    HYRGVR RPWGK+AAEIRDPTRRG RVWLGTF+T
Sbjct:   47 FSEFETKPEIIDLVTPKP---------EIFDFDVKSEIPSE-SNDSFTFQSNPPRVTVQSNRKPPLKIAP---PNRTKWIQFATGNPKPELPVPVVAAEEKRHYRGVRMRPWGKFAAEIRDPTRRGTRVWLGTFET 169          
BLAST of CX296881 vs. ExPASy Swiss-Prot
Match: EF102_ARATH (Ethylene-responsive transcription factor 5 OS=Arabidopsis thaliana GN=ERF5 PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 1.827e-13
Identity = 51/135 (37.78%), Postives = 64/135 (47.41%), Query Frame = 1
Query:   10 FFDYESKPQIIDLVTPQPTNTCSELTNDFFEFDIRPQIQS---QPSNCS-SEFEXXXXXXXXXXXXXXXXXXXXXXVPKKAEGHHFTNRXXXXXXXXXXXXHYRGVRRRPWGKYAAEIRDPTRRGVRVWLGTFDT 402
            F +   KP+IIDL TP+      E  +  FEFD    +     +PSN + ++FE                      +   AE    T              HYRGVR+RPWGK+AAEIRDP +RG RVWLGTFDT
Sbjct:   61 FSESVCKPEIIDLDTPRSM----EFLSIPFEFDSEVSVSDFDFKPSNQNQNQFEPELKSQIRKPPLKISLPAKTEWIQFAAEN---TKPEVTKPVSEEEKKHYRGVRQRPWGKFAAEIRDPNKRGSRVWLGTFDT 188          
BLAST of CX296881 vs. ExPASy Swiss-Prot
Match: EF105_ARATH (Ethylene-responsive transcription factor ERF105 OS=Arabidopsis thaliana GN=ERF105 PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 2.386e-13
Identity = 31/34 (91.18%), Postives = 33/34 (97.06%), Query Frame = 1
Query:  301 HYRGVRRRPWGKYAAEIRDPTRRGVRVWLGTFDT 402
            HYRGVRRRPWGKYAAEIRDP ++GVRVWLGTFDT
Sbjct:   71 HYRGVRRRPWGKYAAEIRDPNKKGVRVWLGTFDT 104          
BLAST of CX296881 vs. ExPASy Swiss-Prot
Match: ERF5_TOBAC (Ethylene-responsive transcription factor 5 OS=Nicotiana tabacum GN=ERF5 PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 2.638e-12
Identity = 29/34 (85.29%), Postives = 32/34 (94.12%), Query Frame = 1
Query:  301 HYRGVRRRPWGKYAAEIRDPTRRGVRVWLGTFDT 402
            HYRGVR+RPWGK+AAEIRDP R+G RVWLGTFDT
Sbjct:  144 HYRGVRQRPWGKFAAEIRDPNRKGTRVWLGTFDT 177          
BLAST of CX296881 vs. ExPASy Swiss-Prot
Match: ERF5_NICSY (Ethylene-responsive transcription factor 5 OS=Nicotiana sylvestris GN=ERF5 PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 2.638e-12
Identity = 29/34 (85.29%), Postives = 32/34 (94.12%), Query Frame = 1
Query:  301 HYRGVRRRPWGKYAAEIRDPTRRGVRVWLGTFDT 402
            HYRGVR+RPWGK+AAEIRDP R+G RVWLGTFDT
Sbjct:  137 HYRGVRQRPWGKFAAEIRDPNRKGTRVWLGTFDT 170          
BLAST of CX296881 vs. ExPASy Swiss-Prot
Match: EF104_ARATH (Ethylene-responsive transcription factor ERF104 OS=Arabidopsis thaliana GN=ERF104 PE=1 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 2.638e-12
Identity = 28/34 (82.35%), Postives = 32/34 (94.12%), Query Frame = 1
Query:  301 HYRGVRRRPWGKYAAEIRDPTRRGVRVWLGTFDT 402
            HYRGVRRRPWGKYAAEIRDP ++G R+WLGT+DT
Sbjct:   87 HYRGVRRRPWGKYAAEIRDPNKKGCRIWLGTYDT 120          
BLAST of CX296881 vs. ExPASy Swiss-Prot
Match: ERF94_ARATH (Ethylene-responsive transcription factor ERF094 OS=Arabidopsis thaliana GN=ERF094 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 1.710e-11
Identity = 28/33 (84.85%), Postives = 32/33 (96.97%), Query Frame = 1
Query:  304 YRGVRRRPWGKYAAEIRDPTRRGVRVWLGTFDT 402
            YRGVR+RPWGK+AAEIRD TR+G+RVWLGTFDT
Sbjct:   82 YRGVRKRPWGKFAAEIRDSTRKGIRVWLGTFDT 114          
BLAST of CX296881 vs. ExPASy Swiss-Prot
Match: ERF1_TOBAC (Ethylene-responsive transcription factor 1 OS=Nicotiana tabacum GN=ERF1 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 2.233e-11
Identity = 27/34 (79.41%), Postives = 31/34 (91.18%), Query Frame = 1
Query:  301 HYRGVRRRPWGKYAAEIRDPTRRGVRVWLGTFDT 402
            HYRGVRRRPWGK+AAEIRDP + G RVWLGT++T
Sbjct:  104 HYRGVRRRPWGKFAAEIRDPAKNGARVWLGTYET 137          
BLAST of CX296881 vs. ExPASy Swiss-Prot
Match: EF101_ARATH (Ethylene-responsive transcription factor 2 OS=Arabidopsis thaliana GN=ERF2 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 2.916e-11
Identity = 27/34 (79.41%), Postives = 31/34 (91.18%), Query Frame = 1
Query:  301 HYRGVRRRPWGKYAAEIRDPTRRGVRVWLGTFDT 402
            HYRGVR+RPWGK+AAEIRDP + G RVWLGTF+T
Sbjct:  116 HYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFET 149          
BLAST of CX296881 vs. ExPASy Swiss-Prot
Match: EF100_ARATH (Ethylene-responsive transcription factor 1A OS=Arabidopsis thaliana GN=ERF1A PE=1 SV=2)

HSP 1 Score: 67.781 bits (164), Expect = 2.916e-11
Identity = 27/34 (79.41%), Postives = 31/34 (91.18%), Query Frame = 1
Query:  301 HYRGVRRRPWGKYAAEIRDPTRRGVRVWLGTFDT 402
            HYRGVR+RPWGK+AAEIRDP + G RVWLGTF+T
Sbjct:  147 HYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFET 180          
The following BLAST results are available for this feature:
BLAST of CX296881 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 14
Match NameE-valueIdentityDescription
EF103_ARATH2.723e-1738.97Ethylene-responsive transcription factor 6 OS=Arab... [more]
EF102_ARATH1.827e-1337.78Ethylene-responsive transcription factor 5 OS=Arab... [more]
EF105_ARATH2.386e-1391.18Ethylene-responsive transcription factor ERF105 OS... [more]
ERF5_TOBAC2.638e-1285.29Ethylene-responsive transcription factor 5 OS=Nico... [more]
ERF5_NICSY2.638e-1285.29Ethylene-responsive transcription factor 5 OS=Nico... [more]
EF104_ARATH2.638e-1282.35Ethylene-responsive transcription factor ERF104 OS... [more]
ERF94_ARATH1.710e-1184.85Ethylene-responsive transcription factor ERF094 OS... [more]
ERF1_TOBAC2.233e-1179.41Ethylene-responsive transcription factor 1 OS=Nico... [more]
EF101_ARATH2.916e-1179.41Ethylene-responsive transcription factor 2 OS=Arab... [more]
EF100_ARATH2.916e-1179.41Ethylene-responsive transcription factor 1A OS=Ara... [more]

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Properties
Property NameValue
Genbank descriptionC05803H02SK FerrChloL1 Citrus clementina cDNA clone C05803H02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296881 ID=CX296881; Name=CX296881; organism=Citrus clementina; type=EST; length=484bp
GCCGCCGTTTTCTTCGACTATGAATCCAAACCTCAAATCATTGATCTTGT
TACACCGCAACCCACTAATACTTGCTCTGAATTGACTAACGATTTCTTTG
AATTTGACATTAGACCTCAAATCCAATCGCAACCGAGCAATTGTAGCTCG
GAATTCGAACCCAAGCCTAAAATATCTCCAAATTCATCCTCTCAATCGTC
TCGCAAACCGTCGCTGAAAATCTCAGTGCCTAAGAAAGCCGAAGGTCATC
ATTTCACCAACCGGAAAAGCAAGGCCAAACCTGAGAGTTCGGAAGAAAAG
CATTACAGAGGAGTTCGACGGAGGCCGTGGGGAAAGTACGCGGCCGAGAT
CCGAGATCCTACCCGGAGAGGCGTACGTGTCTGGCTGGGGACATTTGACA
CGGCCATTGAAGCAGCTAGGGCGTACGACCGCGCAGCTGGAAAGCGGCCT
CGTGCCGAATTCGGCAAGAGGGGGGGGGCCCGGT
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