CX297564

Overview
NameCX297564
Unique NameCX297564
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length800
Libraries
Library NameType
RindPdig24cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX297564 vs. ExPASy Swiss-Prot
Match: AMERL_ARATH (Uncharacterized protein At2g38710 OS=Arabidopsis thaliana GN=At2g38710 PE=2 SV=1)

HSP 1 Score: 350.132 bits (897), Expect = 8.141e-96
Identity = 161/207 (77.78%), Postives = 189/207 (91.30%), Query Frame = 1
Query:   94 MVSANREMAVYCFDTLVAHYNSEDAPPPAFDEGQHPLFVTWKKVVNGGEPRLRGCIGTLEARCLINGFKDYALTSALKDRRFPPIQARELPSLECTVSILTDFETANNYLDWEVGTHGLIIEFTDPEYSTRRSATYLPEVAAHEGWTKVEAIDSLMRKAGFSGPITESLRKRIRLTRYQSTLFALHYSDYASYVKTTRGAAPSILWG 714
            MVSANREMAVYCFDTLV+HYN+E+ PPPAF+E  HPLFVTWKK+VNGGEPRLRGCIGTLEAR LI+GFKDYALTSAL+DRRFPPIQA+ELPSL+CTVS+LTD+E A +YLDWEVG HG+IIEFT+PE +T+RSATYLPEV AHEGWTK+EAIDSL+RKAG++G ITE++R+RI LTRYQSTLF++HYS+Y SYVK TRG    ++ G
Sbjct:    1 MVSANREMAVYCFDTLVSHYNNEETPPPAFEEANHPLFVTWKKIVNGGEPRLRGCIGTLEARRLISGFKDYALTSALRDRRFPPIQAKELPSLQCTVSVLTDYEDAEDYLDWEVGKHGIIIEFTEPETNTKRSATYLPEVPAHEGWTKIEAIDSLVRKAGYNGVITEAVRRRINLTRYQSTLFSMHYSEYLSYVKATRGVVGPVING 207          
BLAST of CX297564 vs. ExPASy Swiss-Prot
Match: AMERL_PONAB (AMMECR1-like protein OS=Pongo abelii GN=AMMECR1L PE=2 SV=1)

HSP 1 Score: 196.823 bits (499), Expect = 1.152e-49
Identity = 98/185 (52.97%), Postives = 123/185 (66.49%), Query Frame = 1
Query:  112 EMAVYCFDTLVAH-YNSEDAPPPAFDEGQHPLFVTWKKVVNGGEPRLRGCIGTLEARCLINGFKDYALTSALKDRRFPPIQARELPSLECTVSILTDFETANNYLDWEVGTHGLIIEFTDPEYSTRRSATYLPEVAAHEGWTKVEAIDSLMRKAGFSGPITESLRKRIRLTRYQSTLFALHYSDY 663
            EM  YCFD L  H Y       P F    +PLFVTWK    G + RLRGCIGT  A  L +G ++Y LTSALKD RFPP+   ELP L C+VS+LT+FE A++YLDWEVG HG+ IEF + E   +R+ATYLPEVA  + W +++ IDSL+RK GF  PIT   RK I+LTRY+S    + Y++Y
Sbjct:  107 EMCCYCFDVLYCHLYGFPQPRLPRFTNDPYPLFVTWK---TGRDKRLRGCIGTFSAMNLHSGLREYTLTSALKDSRFPPLTREELPKLFCSVSLLTNFEDASDYLDWEVGVHGIRIEFIN-EKGVKRTATYLPEVAKEQDWDQIQTIDSLLRKGGFKAPITSEFRKTIKLTRYRSEKVTISYAEY 287          
BLAST of CX297564 vs. ExPASy Swiss-Prot
Match: AMERL_HUMAN (AMMECR1-like protein OS=Homo sapiens GN=AMMECR1L PE=1 SV=1)

HSP 1 Score: 196.823 bits (499), Expect = 1.152e-49
Identity = 98/185 (52.97%), Postives = 123/185 (66.49%), Query Frame = 1
Query:  112 EMAVYCFDTLVAH-YNSEDAPPPAFDEGQHPLFVTWKKVVNGGEPRLRGCIGTLEARCLINGFKDYALTSALKDRRFPPIQARELPSLECTVSILTDFETANNYLDWEVGTHGLIIEFTDPEYSTRRSATYLPEVAAHEGWTKVEAIDSLMRKAGFSGPITESLRKRIRLTRYQSTLFALHYSDY 663
            EM  YCFD L  H Y       P F    +PLFVTWK    G + RLRGCIGT  A  L +G ++Y LTSALKD RFPP+   ELP L C+VS+LT+FE A++YLDWEVG HG+ IEF + E   +R+ATYLPEVA  + W +++ IDSL+RK GF  PIT   RK I+LTRY+S    + Y++Y
Sbjct:  107 EMCCYCFDVLYCHLYGFPQPRLPRFTNDPYPLFVTWK---TGRDKRLRGCIGTFSAMNLHSGLREYTLTSALKDSRFPPLTREELPKLFCSVSLLTNFEDASDYLDWEVGVHGIRIEFIN-EKGVKRTATYLPEVAKEQDWDQIQTIDSLLRKGGFKAPITSEFRKTIKLTRYRSEKVTISYAEY 287          
BLAST of CX297564 vs. ExPASy Swiss-Prot
Match: AMERL_MOUSE (AMMECR1-like protein OS=Mus musculus GN=Ammecr1l PE=2 SV=1)

HSP 1 Score: 196.438 bits (498), Expect = 1.504e-49
Identity = 98/185 (52.97%), Postives = 123/185 (66.49%), Query Frame = 1
Query:  112 EMAVYCFDTLVAH-YNSEDAPPPAFDEGQHPLFVTWKKVVNGGEPRLRGCIGTLEARCLINGFKDYALTSALKDRRFPPIQARELPSLECTVSILTDFETANNYLDWEVGTHGLIIEFTDPEYSTRRSATYLPEVAAHEGWTKVEAIDSLMRKAGFSGPITESLRKRIRLTRYQSTLFALHYSDY 663
            EM  YCFD L  H Y       P F    +PLFVTWK    G + RLRGCIGT  A  L +G ++Y LTSALKD RFPP+   ELP L C+VS+LT+FE A++YLDWEVG HG+ IEF + E   +R+ATYLPEVA  + W +++ IDSL+RK GF  PIT   RK I+LTRY+S    + Y++Y
Sbjct:  107 EMCCYCFDVLYCHLYGFPQPRLPRFTNDPYPLFVTWK---TGRDKRLRGCIGTFSAMNLHSGLREYTLTSALKDSRFPPLTREELPKLFCSVSLLTNFEDASDYLDWEVGVHGIRIEFIN-EKGIKRTATYLPEVAKEQDWDQIQTIDSLLRKGGFKAPITSEFRKSIKLTRYRSEKVTISYAEY 287          
BLAST of CX297564 vs. ExPASy Swiss-Prot
Match: AMER1_PONAB (AMME syndrome candidate gene 1 protein homolog OS=Pongo abelii GN=AMMECR1 PE=2 SV=1)

HSP 1 Score: 194.126 bits (492), Expect = 7.466e-49
Identity = 97/188 (51.60%), Postives = 125/188 (66.49%), Query Frame = 1
Query:  112 EMAVYCFDTLVAH-YNSEDAPPPAFDEGQHPLFVTWKKVVNGGEPRLRGCIGTLEARCLINGFKDYALTSALKDRRFPPIQARELPSLECTVSILTDFETANNYLDWEVGTHGLIIEFTDPEYSTRRSATYLPEVAAHEGWTKVEAIDSLMRKAGFSGPITESLRKRIRLTRYQSTLFALHYSDYASY 672
            EM  +CFD L  H Y  +    P F    +PLFVTWK    G + RLRGCIGT  A  L +G ++Y LTSALKD RFPP+   ELP L C+VS+LT+FE   +YLDWEVG HG+ IEF + E  ++R+ATYLPEVA  +GW  ++ IDSL+RK G+  PIT   RK I+LTRY+S    L Y++Y ++
Sbjct:  129 EMCCFCFDVLYCHLYGYQQPRTPRFTNEPYPLFVTWKI---GRDKRLRGCIGTFSAMNLHSGLREYTLTSALKDSRFPPMTRDELPRLFCSVSLLTNFEDVCDYLDWEVGVHGIRIEFIN-EKGSKRTATYLPEVAKEQGWDHIQTIDSLLRKGGYKAPITNEFRKTIKLTRYRSEKMTLSYAEYLAH 312          
BLAST of CX297564 vs. ExPASy Swiss-Prot
Match: AMER1_MOUSE (AMME syndrome candidate gene 1 protein homolog OS=Mus musculus GN=Ammecr1 PE=2 SV=1)

HSP 1 Score: 194.126 bits (492), Expect = 7.466e-49
Identity = 97/188 (51.60%), Postives = 125/188 (66.49%), Query Frame = 1
Query:  112 EMAVYCFDTLVAH-YNSEDAPPPAFDEGQHPLFVTWKKVVNGGEPRLRGCIGTLEARCLINGFKDYALTSALKDRRFPPIQARELPSLECTVSILTDFETANNYLDWEVGTHGLIIEFTDPEYSTRRSATYLPEVAAHEGWTKVEAIDSLMRKAGFSGPITESLRKRIRLTRYQSTLFALHYSDYASY 672
            EM  +CFD L  H Y  +    P F    +PLFVTWK    G + RLRGCIGT  A  L +G ++Y LTSALKD RFPP+   ELP L C+VS+LT+FE   +YLDWEVG HG+ IEF + E  ++R+ATYLPEVA  +GW  ++ IDSL+RK G+  PIT   RK I+LTRY+S    L Y++Y ++
Sbjct:  140 EMCCFCFDVLYCHLYGYQQPRTPRFTNEPYPLFVTWKI---GRDKRLRGCIGTFSAMNLHSGLREYTLTSALKDSRFPPMTRDELPRLFCSVSLLTNFEDVCDYLDWEVGVHGIRIEFIN-EKGSKRTATYLPEVAKEQGWDHIQTIDSLLRKGGYKAPITNEFRKTIKLTRYRSEKMTLSYAEYLAH 323          
BLAST of CX297564 vs. ExPASy Swiss-Prot
Match: AMER1_HUMAN (AMME syndrome candidate gene 1 protein OS=Homo sapiens GN=AMMECR1 PE=2 SV=1)

HSP 1 Score: 194.126 bits (492), Expect = 7.466e-49
Identity = 97/188 (51.60%), Postives = 125/188 (66.49%), Query Frame = 1
Query:  112 EMAVYCFDTLVAH-YNSEDAPPPAFDEGQHPLFVTWKKVVNGGEPRLRGCIGTLEARCLINGFKDYALTSALKDRRFPPIQARELPSLECTVSILTDFETANNYLDWEVGTHGLIIEFTDPEYSTRRSATYLPEVAAHEGWTKVEAIDSLMRKAGFSGPITESLRKRIRLTRYQSTLFALHYSDYASY 672
            EM  +CFD L  H Y  +    P F    +PLFVTWK    G + RLRGCIGT  A  L +G ++Y LTSALKD RFPP+   ELP L C+VS+LT+FE   +YLDWEVG HG+ IEF + E  ++R+ATYLPEVA  +GW  ++ IDSL+RK G+  PIT   RK I+LTRY+S    L Y++Y ++
Sbjct:  129 EMCCFCFDVLYCHLYGYQQPRTPRFTNEPYPLFVTWKI---GRDKRLRGCIGTFSAMNLHSGLREYTLTSALKDSRFPPMTRDELPRLFCSVSLLTNFEDVCDYLDWEVGVHGIRIEFIN-EKGSKRTATYLPEVAKEQGWDHIQTIDSLLRKGGYKAPITNEFRKTIKLTRYRSEKMTLSYAEYLAH 312          
BLAST of CX297564 vs. ExPASy Swiss-Prot
Match: Y5902_DROME (Uncharacterized protein CG5902 OS=Drosophila melanogaster GN=CG5902 PE=2 SV=1)

HSP 1 Score: 182.57 bits (462), Expect = 2.248e-45
Identity = 92/188 (48.94%), Postives = 121/188 (64.36%), Query Frame = 1
Query:  112 EMAVYCFDTLVAHYNSEDAPP-PAFDEGQHPLFVTWKKVVNGGEPRLRGCIGTLEARCLINGFKDYALTSALKDRRFPPIQARELPSLECTVSILTDFETANNYLDWEVGTHGLIIEFTDPEYSTRRSATYLPEVAAHEGWTKVEAIDSLMRKAGFSGPITESLRKRIRLTRYQSTLFALHYSDYASY 672
            +M ++CF+ L    N+ D P  P F    +PLFVTWK    G + RLRGCIGT  A  L +G ++YALTSA KD RF PI   ELP L  +VSIL +FE A  +LDW++G HG+ IEF   E   +R+ATYLP+VA  +GW +++ IDSL+RK G+   IT   RK I+LTRY+S    +HY +Y  Y
Sbjct:   48 DMCLFCFEVLDCELNNVDGPSVPVFSNDAYPLFVTWKI---GRDKRLRGCIGTFSAMELHHGLREYALTSAFKDSRFAPISRDELPRLTVSVSILQNFEEAQGHLDWQLGVHGIRIEFL-TERGCKRTATYLPQVATEQGWDQLQTIDSLLRKGGYRAAITPETRKSIKLTRYRSQEIQMHYKEYREY 231          
BLAST of CX297564 vs. ExPASy Swiss-Prot
Match: AMERL_CAEEL (Uncharacterized protein R166.3 OS=Caenorhabditis elegans GN=R166.3 PE=2 SV=1)

HSP 1 Score: 178.333 bits (451), Expect = 4.239e-44
Identity = 93/195 (47.69%), Postives = 119/195 (61.03%), Query Frame = 1
Query:   94 MVSANREMAVYCFDTLVAHYNSEDAPP--PAFDEGQHPLFVTWKKVVNGGEPRLRGCIGTLEARCLINGFKDYALTSALKDRRFPPIQARELPSLECTVSILTDFETANNYLDWEVGTHGLIIEFTDPEYSTRRSATYLPEVAAHEGWTKVEAIDSLMRKAGFSGPITESLRKRIRLTRYQSTLFALHYSDYASY 672
            M SAN +MAVYCFD + A  N E  PP        + PLFVTWKK   G +  LRGCIGT     L  G  +YA TSA  D RF PI   E+PSL+C VS+L +FE  +N+ DW +G HG+ + F D      RSA +LPEVA  +GW  VE ID L+RK+G+ G I ++LR  +R+ R+QS+   L Y DY +Y
Sbjct:    1 MTSANIQMAVYCFDVINAQLNREKEPPVPKEIPNVKLPLFVTWKK---GHQHDLRGCIGTFSDLRLGEGLNEYAKTSAFHDSRFKPISREEVPSLQCGVSLLINFEPIHNFRDWTIGRHGVRMNFDDGH--RNRSAVFLPEVAQEQGWNHVETIDHLIRKSGYGGHINDALRSALRIVRFQSSKLVLDYKDYVNY 190          
BLAST of CX297564 vs. ExPASy Swiss-Prot
Match: YKQ3_SCHPO (Uncharacterized protein C688.03c OS=Schizosaccharomyces pombe GN=SPAC688.03c PE=2 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 1.370e-26
Identity = 73/189 (38.62%), Postives = 100/189 (52.91%), Query Frame = 1
Query:  106 NREMAVYCFDTLVA---HYNSEDAPPPAFDEGQHPLFVTWKKVVNGGEPRLRGCIGTLEARCLINGFKDYALTSALKDRRFPPIQARELPSLECTVSILTDFETANNYLDWEVGTHGLIIEFTDPEYSTRRSATYLPEVAAHEGWTKVEAIDSLMRKAGFSGPITESLRKRIRLTRYQSTLFALHYSDY 663
            ++E   YCF+ + A   H    D           PLFV +     G + +LRGCIGT  AR L+     ++  +A  D RF PI   EL  LEC + +L DFE  ++ LDWEVG HG+ I+FT      R S+TYLP VAA + W + E ++SL+ KAG+ G I      +I  TRY+S      Y +Y
Sbjct:   14 DKEYCYYCFEVVAATLEHRKVRDKWNAKSWTRSIPLFVKFASG-KGHDKQLRGCIGTFRARPLVTNLTYFSKQAAFCDERFRPISLGELALLECQIDLLVDFEPIDDPLDWEVGIHGVSIKFT--ANGIRYSSTYLPSVAAEQRWDQEETLESLIHKAGYYGSIRS---LQITATRYKSLEIGCTYEEY 196          
The following BLAST results are available for this feature:
BLAST of CX297564 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 12
Match NameE-valueIdentityDescription
AMERL_ARATH8.141e-9677.78Uncharacterized protein At2g38710 OS=Arabidopsis t... [more]
AMERL_PONAB1.152e-4952.97AMMECR1-like protein OS=Pongo abelii GN=AMMECR1L P... [more]
AMERL_HUMAN1.152e-4952.97AMMECR1-like protein OS=Homo sapiens GN=AMMECR1L P... [more]
AMERL_MOUSE1.504e-4952.97AMMECR1-like protein OS=Mus musculus GN=Ammecr1l P... [more]
AMER1_PONAB7.466e-4951.60AMME syndrome candidate gene 1 protein homolog OS=... [more]
AMER1_MOUSE7.466e-4951.60AMME syndrome candidate gene 1 protein homolog OS=... [more]
AMER1_HUMAN7.466e-4951.60AMME syndrome candidate gene 1 protein OS=Homo sap... [more]
Y5902_DROME2.248e-4548.94Uncharacterized protein CG5902 OS=Drosophila melan... [more]
AMERL_CAEEL4.239e-4447.69Uncharacterized protein R166.3 OS=Caenorhabditis e... [more]
YKQ3_SCHPO1.370e-2638.62Uncharacterized protein C688.03c OS=Schizosaccharo... [more]

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Properties
Property NameValue
Genbank descriptionC06002H03SK RindPdig24 Citrus clementina cDNA clone C06002H03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX297564 ID=CX297564; Name=CX297564; organism=Citrus clementina; type=EST; length=800bp
AATTCGGCACGAGGAGAAAATTTAGTAAGGGAAAAAAAAACCAGCCATTT
CTCAGAGCTTTGAAGAAATTGAAAGAAAAAAAAATTTTAAAAAATGGTGT
CGGCAAATCGGGAAATGGCGGTGTACTGTTTCGACACTCTGGTGGCTCAC
TACAACAGCGAGGACGCTCCCCCTCCCGCCTTTGACGAAGGCCAACACCC
ATTGTTTGTCACTTGGAAGAAAGTGGTGAATGGTGGGGAACCTCGTTTGC
GTGGATGTATCGGAACTCTGGAAGCTCGTTGCTTGATTAATGGCTTTAAG
GACTATGCTTTGACCAGTGCATTGAAGGACCGAAGGTTTCCTCCTATACA
AGCTAGAGAGCTGCCATCCTTGGAATGTACAGTTTCTATTTTGACTGATT
TTGAAACTGCTAACAACTATCTTGACTGGGAGGTTGGAACACATGGTTTA
ATTATTGAGTTTACTGACCCTGAATATAGTACAAGGCGAAGTGCCACATA
CCTTCCTGAAGTGGCTGCCCATGAAGGATGGACTAAAGTGGAGGCAATCG
ACTCACTGATGCGAAAAGCAGGCTTCAGTGGTCCCATCACCGAGTCACTC
CGCAAGCGTATACGACTGACTCGTTACCAGAGCACACTATTTGCATTGCA
CTACAGCGACTATGCCTCTTATGTGAAGACAACTAGGGGTGCAGCTCCGT
CCATTCTTTGGGGCTAGCCCTGGCACTATTGATTCTTCCAAACGCTTTCG
CTAAACAGCAAGCTGGTATGCCTAACAATATTTAGTTAAAAAAAAAAAAA
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