CX297568

Overview
NameCX297568
Unique NameCX297568
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length654
Libraries
Library NameType
RindPdig24cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX297568_ssr63 microsatellite CX297568_ssr63:63..80. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig594 contig Ccv1_Contig594:818..1471. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX297568 vs. ExPASy Swiss-Prot
Match: EF2_BETVU (Elongation factor 2 OS=Beta vulgaris PE=2 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 4.991e-31
Identity = 64/75 (85.33%), Postives = 70/75 (93.33%), Query Frame = -1
Query:  418 IKAYLPVIESFGFSGTLRAATSGQAFPQCVFDHWDMMSSDPLEPGTQAAQLVADIRKRKGLKEQMTPLSEFEDKL 642
            IKAYLPV+ESFGFS TLRA+TSGQAFPQCVFDHW+MM SDPLE G+QA+ LV+ IRKRKGLKEQMTPLSEFEDKL
Sbjct:  769 IKAYLPVVESFGFSSTLRASTSGQAFPQCVFDHWEMMPSDPLEAGSQASTLVSVIRKRKGLKEQMTPLSEFEDKL 843          
BLAST of CX297568 vs. ExPASy Swiss-Prot
Match: EF2_CHLKE (Elongation factor 2 OS=Chlorella kessleri PE=2 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 1.077e-25
Identity = 55/75 (73.33%), Postives = 63/75 (84.00%), Query Frame = -1
Query:  418 IKAYLPVIESFGFSGTLRAATSGQAFPQCVFDHWDMMSSDPLEPGTQAAQLVADIRKRKGLKEQMTPLSEFEDKL 642
            +KAYLPVIESFGF+ TLRAAT+GQAFPQCVFDHW+ M SDP + G+QA  LV DIRKRKGLK +   LSE+EDKL
Sbjct:  771 LKAYLPVIESFGFTSTLRAATAGQAFPQCVFDHWEAMGSDPTQVGSQANTLVMDIRKRKGLKPEPAALSEYEDKL 845          
BLAST of CX297568 vs. ExPASy Swiss-Prot
Match: EF2_SCHPO (Elongation factor 2 OS=Schizosaccharomyces pombe GN=eft1 PE=1 SV=2)

HSP 1 Score: 101.293 bits (251), Expect = 4.682e-21
Identity = 47/75 (62.67%), Postives = 58/75 (77.33%), Query Frame = -1
Query:  418 IKAYLPVIESFGFSGTLRAATSGQAFPQCVFDHWDMMSSDPLEPGTQAAQLVADIRKRKGLKEQMTPLSEFEDKL 642
            IKAYLPV ESFGF+G LR AT+GQAFPQ VFDHW  MS DPL+P ++  Q+V + RKRKGLKE +   +E+ D+L
Sbjct:  768 IKAYLPVNESFGFTGELRQATAGQAFPQLVFDHWSPMSGDPLDPTSKPGQIVCEARKRKGLKENVPDYTEYYDRL 842          
BLAST of CX297568 vs. ExPASy Swiss-Prot
Match: EF2_CAEEL (Elongation factor 2 OS=Caenorhabditis elegans GN=eft-2 PE=2 SV=4)

HSP 1 Score: 100.523 bits (249), Expect = 7.986e-21
Identity = 46/75 (61.33%), Postives = 56/75 (74.67%), Query Frame = -1
Query:  418 IKAYLPVIESFGFSGTLRAATSGQAFPQCVFDHWDMMSSDPLEPGTQAAQLVADIRKRKGLKEQMTPLSEFEDKL 642
            +KAYLPV ESFGF+  LR+ T GQAFPQCVFDHW ++  DPLE GT+  Q+V D RKRKGLKE +  L  + DK+
Sbjct:  778 VKAYLPVNESFGFTADLRSNTGGQAFPQCVFDHWQVLPGDPLEAGTKPNQIVLDTRKRKGLKEGVPALDNYLDKM 852          
BLAST of CX297568 vs. ExPASy Swiss-Prot
Match: EF2_DROME (Elongation factor 2 OS=Drosophila melanogaster GN=Ef2b PE=1 SV=4)

HSP 1 Score: 98.5969 bits (244), Expect = 3.035e-20
Identity = 45/75 (60.00%), Postives = 56/75 (74.67%), Query Frame = -1
Query:  418 IKAYLPVIESFGFSGTLRAATSGQAFPQCVFDHWDMMSSDPLEPGTQAAQLVADIRKRKGLKEQMTPLSEFEDKL 642
            +KAYLPV ESFGF+  LR+ T GQAFPQCVFDHW ++  DP EP ++   +V D RKRKGLKE +  LS++ DKL
Sbjct:  770 VKAYLPVNESFGFTADLRSNTGGQAFPQCVFDHWQVLPGDPSEPSSKPYAIVQDTRKRKGLKEGLPDLSQYLDKL 844          
BLAST of CX297568 vs. ExPASy Swiss-Prot
Match: EF2_CRYPV (Elongation factor 2 OS=Cryptosporidium parvum PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 5.176e-20
Identity = 44/75 (58.67%), Postives = 59/75 (78.67%), Query Frame = -1
Query:  418 IKAYLPVIESFGFSGTLRAATSGQAFPQCVFDHWDMMSSDPLEPGTQAAQLVADIRKRKGLKEQMTPLSEFEDKL 642
            IKAYLPV +SF F+  LRAATSG+AFPQCVFDHW++++ DPLE G++  +LV  IR+RK +KE++  L  + DKL
Sbjct:  758 IKAYLPVADSFKFTTVLRAATSGKAFPQCVFDHWELINGDPLEKGSKTEELVKAIRRRKNIKEEIPALDNYLDKL 832          
BLAST of CX297568 vs. ExPASy Swiss-Prot
Match: EF2_ASHGO (Elongation factor 2 OS=Ashbya gossypii GN=EFT1 PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 5.176e-20
Identity = 45/75 (60.00%), Postives = 56/75 (74.67%), Query Frame = -1
Query:  418 IKAYLPVIESFGFSGTLRAATSGQAFPQCVFDHWDMMSSDPLEPGTQAAQLVADIRKRKGLKEQMTPLSEFEDKL 642
            +KAYLPV ESFGF+G LR AT GQAFPQ VFDHW  + +DPL+P T+A ++V + RKR GLKE +    E+ DKL
Sbjct:  768 VKAYLPVNESFGFTGELRQATGGQAFPQMVFDHWATLGTDPLDPTTKAGEIVVEARKRHGLKENVPGWQEYYDKL 842          
BLAST of CX297568 vs. ExPASy Swiss-Prot
Match: EF2_KLULA (Elongation factor 2 OS=Kluyveromyces lactis GN=EFT1 PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 8.830e-20
Identity = 43/75 (57.33%), Postives = 57/75 (76.00%), Query Frame = -1
Query:  418 IKAYLPVIESFGFSGTLRAATSGQAFPQCVFDHWDMMSSDPLEPGTQAAQLVADIRKRKGLKEQMTPLSEFEDKL 642
            +KAYLP+ ESFGF+G LR AT GQAFPQ VFDHW  + +DPL+P T+A ++V   RKR+G+KE++    E+ DKL
Sbjct:  768 VKAYLPINESFGFTGELRQATGGQAFPQMVFDHWATLGTDPLDPSTKAGEIVLAARKRQGMKEEVPGWQEYYDKL 842          
BLAST of CX297568 vs. ExPASy Swiss-Prot
Match: EF2_CRIGR (Elongation factor 2 OS=Cricetulus griseus GN=EEF2 PE=3 SV=3)

HSP 1 Score: 97.0561 bits (240), Expect = 8.830e-20
Identity = 44/75 (58.67%), Postives = 56/75 (74.67%), Query Frame = -1
Query:  418 IKAYLPVIESFGFSGTLRAATSGQAFPQCVFDHWDMMSSDPLEPGTQAAQLVADIRKRKGLKEQMTPLSEFEDKL 642
            +KAYLPV ESFGF+  LR+ T GQAFPQCVFDHW ++  DP +  ++ +Q+VA+ RKRKGLKE +  L  F DKL
Sbjct:  784 VKAYLPVNESFGFTADLRSNTGGQAFPQCVFDHWQILPGDPFDNSSRGSQVVAETRKRKGLKEGIPALDNFLDKL 858          
BLAST of CX297568 vs. ExPASy Swiss-Prot
Match: EF2_CHICK (Elongation factor 2 OS=Gallus gallus GN=EEF2 PE=1 SV=3)

HSP 1 Score: 97.0561 bits (240), Expect = 8.830e-20
Identity = 44/75 (58.67%), Postives = 56/75 (74.67%), Query Frame = -1
Query:  418 IKAYLPVIESFGFSGTLRAATSGQAFPQCVFDHWDMMSSDPLEPGTQAAQLVADIRKRKGLKEQMTPLSEFEDKL 642
            +KAYLPV ESFGF+  LR+ T GQAFPQCVFDHW ++  DP +  ++ +Q+VA+ RKRKGLKE +  L  F DKL
Sbjct:  784 VKAYLPVNESFGFTADLRSNTGGQAFPQCVFDHWQILPGDPFDSASRPSQVVAETRKRKGLKEGIPALDNFLDKL 858          
The following BLAST results are available for this feature:
BLAST of CX297568 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 30
Match NameE-valueIdentityDescription
EF2_BETVU4.991e-3185.33Elongation factor 2 OS=Beta vulgaris PE=2 SV=1[more]
EF2_CHLKE1.077e-2573.33Elongation factor 2 OS=Chlorella kessleri PE=2 SV=... [more]
EF2_SCHPO4.682e-2162.67Elongation factor 2 OS=Schizosaccharomyces pombe G... [more]
EF2_CAEEL7.986e-2161.33Elongation factor 2 OS=Caenorhabditis elegans GN=e... [more]
EF2_DROME3.035e-2060.00Elongation factor 2 OS=Drosophila melanogaster GN=... [more]
EF2_CRYPV5.176e-2058.67Elongation factor 2 OS=Cryptosporidium parvum PE=3... [more]
EF2_ASHGO5.176e-2060.00Elongation factor 2 OS=Ashbya gossypii GN=EFT1 PE=... [more]
EF2_KLULA8.830e-2057.33Elongation factor 2 OS=Kluyveromyces lactis GN=EFT... [more]
EF2_CRIGR8.830e-2058.67Elongation factor 2 OS=Cricetulus griseus GN=EEF2 ... [more]
EF2_CHICK8.830e-2058.67Elongation factor 2 OS=Gallus gallus GN=EEF2 PE=1 ... [more]

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Properties
Property NameValue
Genbank descriptionC06002H07SK RindPdig24 Citrus clementina cDNA clone C06002H07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX297568 ID=CX297568; Name=CX297568; organism=Citrus clementina; type=EST; length=654bp
AGGAATTCGGCACGAGGTAGGTCTCGAGTTTTTTTTTTTTTTTTTTGAAC
AAGAAAAATATCATAATAATAATAATAATATATCAACCAACGTCGGCCAG
AATTAGTTTAAACACATGACAGAACATCAAACCTTAAAAGCTGTGAATTG
TAAAATTTAAAACCTAGATGACAGAGACAGGGTTACTAAACCCAATCAAC
AGTAATATTACTTTACTAAACACAATGAGGATATTGAAAAACTTTGAAAC
AAAAATAAGCATCAGCAAAAAATATTGCTGCGCAATCTCACCCTTGATGT
CAAGATGAAATGTTTACAGCTCGTCCTCTACTCGGATAGCGGTGTCATTT
GCTCCCTCTTCCTGATATCAGCAACAAGCTGCGCAATCTCACCCTTGATG
TCAAGACGAAATGTTTACAGCTTGTCCTCAAACTCAGATAGTGGTGTCAT
TTGCTCCTTCAAGCCCTTCCTCTTCCTGATATCAGCAACAAGCTGTGCAG
CCTGTGTACCAGGCTCCAGTGGATCGGATGACATCATGTCCCAGTGATCA
AACACACATTGTGGGAAGGCCTGTCCTGACGTTGCAGCCCTCAAAGTGCC
TGAGAATCCAAAGGACTCGATGACGGGAAGGTAAGCCTTGATCCTCGTGC
CGAA
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