CX297678
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX297678 vs. ExPASy Swiss-Prot
Match: BRE1B_ARATH (E3 ubiquitin-protein ligase BRE1-like 2 OS=Arabidopsis thaliana GN=HUB2 PE=1 SV=2) HSP 1 Score: 296.204 bits (757), Expect = 1.141e-79 Identity = 148/236 (62.71%), Postives = 180/236 (76.27%), Query Frame = 3 Query: 6 LEEAMKSKDREAEAYIAEMETIGQAFEDMQTQNQHLLQQVAERDDLNIKLVSESVKTKQVQSFLLSEKQALARQLQQINALVESAKLRILHAEEQMKACLTEALRYNSEDRHLAVNLETTKWELADAEKELKWLKSAVTSSDKEYEQIQRKTEDXXXXXXXXXXXXXXXXXXXXXVNNKVAELTSETGEAAIQKLQDEIKDCKAILKCGVCFDRPQEVVITKCFHLFCNPCIQRNL 713 L+E +K K++EAEA IAEMETIGQA+EDMQTQNQHLLQQVAERDD NIKLVSESVKTK + LSEKQ + +QL Q+NA VE+ K RI H EEQMK C +EA + EDRHL ++LETTKWE+ADA+KE +WLKSAV+SS+KEYEQI R+T+D +N ++ EL SE+ EAAI +LQ+E+K+CK ILKCGVCFDRP+EVVI KC+HLFC CIQR+L Sbjct: 641 LKEGIKVKEQEAEASIAEMETIGQAYEDMQTQNQHLLQQVAERDDYNIKLVSESVKTKHAYNTHLSEKQVMEKQLHQVNASVENFKARIAHNEEQMKGCFSEAYKLIQEDRHLVISLETTKWEVADADKEFRWLKSAVSSSEKEYEQISRRTDDIKLELDDERREKKKLEEELMELNKELEELGSESVEAAIVRLQEEVKNCKNILKCGVCFDRPKEVVIVKCYHLFCQQCIQRSL 876
BLAST of CX297678 vs. ExPASy Swiss-Prot
Match: BRE1B_ORYSJ (E3 ubiquitin-protein ligase BRE1-like 2 OS=Oryza sativa subsp. japonica GN=BRE1B PE=2 SV=1) HSP 1 Score: 283.493 bits (724), Expect = 7.654e-76 Identity = 141/236 (59.75%), Postives = 180/236 (76.27%), Query Frame = 3 Query: 6 LEEAMKSKDREAEAYIAEMETIGQAFEDMQTQNQHLLQQVAERDDLNIKLVSESVKTKQVQSFLLSEKQALARQLQQINALVESAKLRILHAEEQMKACLTEALRYNSEDRHLAVNLETTKWELADAEKELKWLKSAVTSSDKEYEQIQRKTEDXXXXXXXXXXXXXXXXXXXXXVNNKVAELTSETGEAAIQKLQDEIKDCKAILKCGVCFDRPQEVVITKCFHLFCNPCIQRNL 713 L+E+++ K+ E + +I+E+ETIGQA+EDMQTQNQHLLQQVA+RDD NIKLVS+SVK KQ LL+EK L +QLQ +N+ +ES+KL+I EEQMK + +A++ +SE+RHLA++LE T E++DAEKELKWL+SA S++KEYE Q+K + V N+V+ELTSET E IQKLQDEIK+CKAILKCGVCFDRP+EVVITKCFHLFC+PCIQRNL Sbjct: 585 LKESIRIKEAEVDGHISEIETIGQAYEDMQTQNQHLLQQVADRDDFNIKLVSDSVKMKQAYGSLLAEKNMLQKQLQHVNSSLESSKLKITSGEEQMKTYVAQAMKSSSENRHLAISLERTMLEVSDAEKELKWLRSATGSAEKEYEINQKKIAELKMELERERNERIKLEEEYEEVKNEVSELTSETEETTIQKLQDEIKECKAILKCGVCFDRPKEVVITKCFHLFCSPCIQRNL 820
BLAST of CX297678 vs. ExPASy Swiss-Prot
Match: BRE1B_ORYSI (E3 ubiquitin-protein ligase BRE1-like 2 OS=Oryza sativa subsp. indica GN=BRE1B PE=3 SV=2) HSP 1 Score: 283.493 bits (724), Expect = 7.654e-76 Identity = 141/236 (59.75%), Postives = 180/236 (76.27%), Query Frame = 3 Query: 6 LEEAMKSKDREAEAYIAEMETIGQAFEDMQTQNQHLLQQVAERDDLNIKLVSESVKTKQVQSFLLSEKQALARQLQQINALVESAKLRILHAEEQMKACLTEALRYNSEDRHLAVNLETTKWELADAEKELKWLKSAVTSSDKEYEQIQRKTEDXXXXXXXXXXXXXXXXXXXXXVNNKVAELTSETGEAAIQKLQDEIKDCKAILKCGVCFDRPQEVVITKCFHLFCNPCIQRNL 713 L+E+++ K+ E + +I+E+ETIGQA+EDMQTQNQHLLQQVA+RDD NIKLVS+SVK KQ LL+EK L +QLQ +N+ +ES+KL+I EEQMK + +A++ +SE+RHLA++LE T E++DAEKELKWL+SA S++KEYE Q+K + V N+V+ELTSET E IQKLQDEIK+CKAILKCGVCFDRP+EVVITKCFHLFC+PCIQRNL Sbjct: 585 LKESIRIKEAEVDGHISEIETIGQAYEDMQTQNQHLLQQVADRDDFNIKLVSDSVKMKQAYGSLLAEKNMLQKQLQHVNSSLESSKLKITSGEEQMKTYVAQAMKSSSENRHLAISLERTMLEVSDAEKELKWLRSATGSAEKEYEINQKKIAELKMELERERNERIKLEEEYEEVKNEVSELTSETEETTIQKLQDEIKECKAILKCGVCFDRPKEVVITKCFHLFCSPCIQRNL 820
BLAST of CX297678 vs. ExPASy Swiss-Prot
Match: BRE1A_ORYSJ (E3 ubiquitin-protein ligase BRE1-like 1 OS=Oryza sativa subsp. japonica GN=BRE1A PE=2 SV=3) HSP 1 Score: 156.762 bits (395), Expect = 1.081e-37 Identity = 86/237 (36.29%), Postives = 131/237 (55.27%), Query Frame = 3 Query: 6 LEEAMKSKDREAEAYIAEMETIGQAFEDMQTQNQHLLQQVAERDDLNIKLVSESVKTKQVQSFLLSEKQALARQLQQINALVESAKLRILHAEEQMKACLTEALRYNSEDRHLAVNLETTKWELADAEKELKWLKSAVTSSDKEYEQIQRKTEDXXXXXXXXXXXXXXXXXXXXXVNNKVAELTSETGEAAI-QKLQDEIKDCKAILKCGVCFDRPQEVVITKCFHLFCNPCIQRNL 713 L +KSK E EAY E+E IGQA+ED+Q QNQ LLQQ+ ERDD N K+ E VK KQ Q L E +L R LQQ ++L++ +I+ E+Q+K + + +V+L + +L D ++ + L ++ + + D ++ K + L ++ E+A+ +KL+ E+K+ + ILKCG+C DR +EVVITKC+HLFCN CIQ++L Sbjct: 624 LSHMLKSKQEECEAYRVEVECIGQAYEDIQAQNQQLLQQIIERDDDNTKIFMEGVKAKQTQDALHLETYSLRRNLQQESSLMDLYNQKIVSLEDQLKMWSDRVGKLQEDGWQQSVSLSNYQRKLVDVHRDAQKLMQSLDGIQANVGSSRLEVADLLIELEKERFSKKRIEDDLEVMSRKASSLRAKARESAVLEKLRHEVKEYRGILKCGICHDRQKEVVITKCYHLFCNQCIQKSL 860
BLAST of CX297678 vs. ExPASy Swiss-Prot
Match: BRE1A_ORYSI (E3 ubiquitin-protein ligase BRE1-like 1 OS=Oryza sativa subsp. indica GN=BRE1A PE=3 SV=2) HSP 1 Score: 156.762 bits (395), Expect = 1.081e-37 Identity = 86/237 (36.29%), Postives = 131/237 (55.27%), Query Frame = 3 Query: 6 LEEAMKSKDREAEAYIAEMETIGQAFEDMQTQNQHLLQQVAERDDLNIKLVSESVKTKQVQSFLLSEKQALARQLQQINALVESAKLRILHAEEQMKACLTEALRYNSEDRHLAVNLETTKWELADAEKELKWLKSAVTSSDKEYEQIQRKTEDXXXXXXXXXXXXXXXXXXXXXVNNKVAELTSETGEAAI-QKLQDEIKDCKAILKCGVCFDRPQEVVITKCFHLFCNPCIQRNL 713 L +KSK E EAY E+E IGQA+ED+Q QNQ LLQQ+ ERDD N K+ E VK KQ Q L E +L R LQQ ++L++ +I+ E+Q+K + + +V+L + +L D ++ + L ++ + + D ++ K + L ++ E+A+ +KL+ E+K+ + ILKCG+C DR +EVVITKC+HLFCN CIQ++L Sbjct: 624 LSHMLKSKQEECEAYRVEVECIGQAYEDIQAQNQQLLQQIIERDDDNTKIFMEGVKAKQTQDALHLETYSLRRNLQQESSLMDLYNQKIVSLEDQLKMWSDRVGKLQEDGWQQSVSLSNYQRKLVDVHRDAQKLMQSLDGIQANVGSSRLEVADLLIELEKERFSKKRIEDDLEVMSRKASSLRAKARESAVLEKLRHEVKEYRGILKCGICHDRQKEVVITKCYHLFCNQCIQKSL 860
BLAST of CX297678 vs. ExPASy Swiss-Prot
Match: BRE1A_ARATH (E3 ubiquitin-protein ligase BRE1-like 1 OS=Arabidopsis thaliana GN=HUB1 PE=1 SV=1) HSP 1 Score: 149.058 bits (375), Expect = 2.253e-35 Identity = 84/233 (36.05%), Postives = 126/233 (54.08%), Query Frame = 3 Query: 12 EAMKSKDREAEAYIAEMETIGQAFEDMQTQNQHLLQQVAERDDLNIKLVSESVKTKQVQSFLLSEKQALARQLQQINALVESAKLRILHAEEQMKACLTEALRYNSEDRHLAVNLETTKWELADAEKELKWLKSAVTSSDKEYEQIQRKTEDXXXXXXXXXXXXXXXXXXXXXVNNKVAELTS-ETGEAAIQKLQDEIKDCKAILKCGVCFDRPQEVVITKCFHLFCNPCIQR 707 + +KSK E Y++E++TIG A+ED+ QNQ LL QV ERDD NIKL E + ++Q+Q LL +K + + +QQ +A + E+Q++ C + + + +V+LE + + AD L+ +S + S + EQ + KV+ L S G +AIQKL+ E+ + K ILKC C DRP+EVVITKC+HLFCNPC+Q+ Sbjct: 620 DILKSKHEEHGTYLSEIQTIGSAYEDIVPQNQQLLLQVTERDDYNIKLFLEGITSRQMQDTLLIDKYIMDKDIQQGSAYASFLSKKSSRIEDQLRFCTDQFQKLAEDKYQKSVSLENLQKKRADIGNGLEQARSRLEESHSKVEQSRLDYGALELELEIERFNRRRIEEEMEIAKKKVSRLRSLIEGSSAIQKLRQELSEFKEILKCKACNDRPKEVVITKCYHLFCNPCVQK 852
BLAST of CX297678 vs. ExPASy Swiss-Prot
Match: BRE1B_RAT (E3 ubiquitin-protein ligase BRE1B OS=Rattus norvegicus GN=Rnf40 PE=1 SV=1) HSP 1 Score: 112.464 bits (280), Expect = 2.337e-24 Identity = 77/251 (30.68%), Postives = 120/251 (47.81%), Query Frame = 3 Query: 6 LEEAMKSKDREAEAYIAEMETIGQAFEDMQTQNQHLLQQVAERDDLNIKLVSESVKTKQVQSFLLSEKQALARQLQQINALVESAKLRILHAEEQMKA-------------CLTEALRYNSEDRHLAVNL-ETTKWELADAEKELKWLKSAVTSS----DKEYEQIQRKTEDXXXXXXXXXXXXXXXXXXXXXVNNKVAELTSETGEAAIQKLQDEIKDCKAILKCGVCFDRPQEVVITKCFHLFCNPCIQ 704 L+ + + +E EA ++EM+ GQAFEDMQ QN LLQQ+ E+DD N KL+SE +K Q+ L EK L Q+ + + V++ L + EE+ +A ++AL N A L E K +L + L+ ++ + S +KE ++R ED + E+ ++ E LQ+EIK+ KA L C C R ++ V+TKCFH+FC C++ Sbjct: 741 LQRKLGATKQEEEALLSEMDVTGQAFEDMQEQNGRLLQQLREKDDANFKLMSERIKANQIHKLLREEKDELGEQVLGLKSQVDAQLLTVQKLEEKERALQGSLGGVEKELTLRSQALELNKRKAVEAAQLAEDLKVQLEHVQTRLREIQPCLAESRAAREKESFNLKRAQEDISRLRRKLE-------------KQRKVEVYADADEI----LQEEIKEYKARLTCPCCNTRKKDAVLTKCFHVFCFECVR 974
BLAST of CX297678 vs. ExPASy Swiss-Prot
Match: BRE1B_PONAB (E3 ubiquitin-protein ligase BRE1B OS=Pongo abelii GN=RNF40 PE=2 SV=1) HSP 1 Score: 112.464 bits (280), Expect = 2.337e-24 Identity = 77/251 (30.68%), Postives = 120/251 (47.81%), Query Frame = 3 Query: 6 LEEAMKSKDREAEAYIAEMETIGQAFEDMQTQNQHLLQQVAERDDLNIKLVSESVKTKQVQSFLLSEKQALARQLQQINALVESAKLRILHAEEQMKA-------------CLTEALRYNSEDRHLAVNL-ETTKWELADAEKELKWLKSAVTSS----DKEYEQIQRKTEDXXXXXXXXXXXXXXXXXXXXXVNNKVAELTSETGEAAIQKLQDEIKDCKAILKCGVCFDRPQEVVITKCFHLFCNPCIQ 704 L+ + + +E EA ++EM+ GQAFEDMQ QN LLQQ+ E+DD N KL+SE +K Q+ L EK L Q+ + + V++ L + EE+ +A ++AL N A L E K +L + L+ ++ + S +KE ++R ED + E+ ++ E LQ+EIK+ KA L C C R ++ V+TKCFH+FC C++ Sbjct: 740 LQRKLGATKQEEEALLSEMDVTGQAFEDMQEQNGRLLQQLREKDDANFKLMSERIKANQIHKLLREEKDELGEQVLGLKSQVDAQLLTVQKLEEKERALQGSLGGVEKELTLRSQALELNKRKAVEAAQLAEDLKVQLEHVQTRLREIQPCLAESRAAREKESFNLKRAQEDISRLRRKLE-------------KQRKVEVYADADEI----LQEEIKEYKARLTCPCCNTRKKDAVLTKCFHVFCFECVR 973
BLAST of CX297678 vs. ExPASy Swiss-Prot
Match: BRE1B_MOUSE (E3 ubiquitin-protein ligase BRE1B OS=Mus musculus GN=Rnf40 PE=2 SV=2) HSP 1 Score: 112.464 bits (280), Expect = 2.337e-24 Identity = 77/251 (30.68%), Postives = 120/251 (47.81%), Query Frame = 3 Query: 6 LEEAMKSKDREAEAYIAEMETIGQAFEDMQTQNQHLLQQVAERDDLNIKLVSESVKTKQVQSFLLSEKQALARQLQQINALVESAKLRILHAEEQMKA-------------CLTEALRYNSEDRHLAVNL-ETTKWELADAEKELKWLKSAVTSS----DKEYEQIQRKTEDXXXXXXXXXXXXXXXXXXXXXVNNKVAELTSETGEAAIQKLQDEIKDCKAILKCGVCFDRPQEVVITKCFHLFCNPCIQ 704 L+ + + +E EA ++EM+ GQAFEDMQ QN LLQQ+ E+DD N KL+SE +K Q+ L EK L Q+ + + V++ L + EE+ +A ++AL N A L E K +L + L+ ++ + S +KE ++R ED + E+ ++ E LQ+EIK+ KA L C C R ++ V+TKCFH+FC C++ Sbjct: 740 LQRKLGATKQEEEALLSEMDVTGQAFEDMQEQNGRLLQQLREKDDANFKLMSERIKANQIHKLLREEKDELGEQVLGLKSQVDAQLLTVQKLEEKERALQGSLGGVEKELTLRSQALELNKRKAVEAAQLAEDLKVQLEHVQTRLREIQPCLAESRAAREKESFNLKRAQEDISRLRRKLE-------------KQRKVEVYADADEI----LQEEIKEYKARLTCPCCNTRKKDAVLTKCFHVFCFECVR 973
BLAST of CX297678 vs. ExPASy Swiss-Prot
Match: BRE1B_MACFA (E3 ubiquitin-protein ligase BRE1B OS=Macaca fascicularis GN=RNF40 PE=2 SV=1) HSP 1 Score: 112.464 bits (280), Expect = 2.337e-24 Identity = 77/251 (30.68%), Postives = 120/251 (47.81%), Query Frame = 3 Query: 6 LEEAMKSKDREAEAYIAEMETIGQAFEDMQTQNQHLLQQVAERDDLNIKLVSESVKTKQVQSFLLSEKQALARQLQQINALVESAKLRILHAEEQMKA-------------CLTEALRYNSEDRHLAVNL-ETTKWELADAEKELKWLKSAVTSS----DKEYEQIQRKTEDXXXXXXXXXXXXXXXXXXXXXVNNKVAELTSETGEAAIQKLQDEIKDCKAILKCGVCFDRPQEVVITKCFHLFCNPCIQ 704 L+ + + +E EA ++EM+ GQAFEDMQ QN LLQQ+ E+DD N KL+SE +K Q+ L EK L Q+ + + V++ L + EE+ +A ++AL N A L E K +L + L+ ++ + S +KE ++R ED + E+ ++ E LQ+EIK+ KA L C C R ++ V+TKCFH+FC C++ Sbjct: 740 LQRKLGATKQEEEALLSEMDVTGQAFEDMQEQNGRLLQQLREKDDANFKLMSERIKANQIHKLLREEKDELGEQVLGLKSQVDAQLLTVQKLEEKERALQGSLGGVEKELTLRSQALELNKRKAVEAAQLAEDLKVQLEHVQTRLREIQPCLAESRAAREKESFNLKRAQEDISRLRRKLE-------------KQRKVEVYADADEI----LQEEIKEYKARLTCPCCNTRKKDAVLTKCFHVFCFECVR 973 The following BLAST results are available for this feature:
BLAST of CX297678 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 17
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Sequences
The
following sequences are available for this feature:
EST sequence >CX297678 ID=CX297678; Name=CX297678; organism=Citrus clementina; type=EST; length=713bpback to top |