CX297710

Overview
NameCX297710
Unique NameCX297710
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length186
Libraries
Library NameType
RindPdig24cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX297710 vs. ExPASy Swiss-Prot
Match: RK2_CITSI (50S ribosomal protein L2, chloroplastic OS=Citrus sinensis GN=rpl2-A PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 4.618e-16
Identity = 38/38 (100.00%), Postives = 38/38 (100.00%), Query Frame = 1
Query:   13 APIGRKRPATPWGYPALGRRSRKRNKYSDNLILRRRTK 126
            APIGRKRPATPWGYPALGRRSRKRNKYSDNLILRRRTK
Sbjct:  237 APIGRKRPATPWGYPALGRRSRKRNKYSDNLILRRRTK 274          
BLAST of CX297710 vs. ExPASy Swiss-Prot
Match: RK2_POPTR (50S ribosomal protein L2, chloroplastic OS=Populus trichocarpa GN=rpl2-A PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 2.994e-15
Identity = 36/38 (94.74%), Postives = 38/38 (100.00%), Query Frame = 1
Query:   13 APIGRKRPATPWGYPALGRRSRKRNKYSDNLILRRRTK 126
            APIGRK+PATPWGYPALGRRSRKRNKYSDNLILRRR+K
Sbjct:  237 APIGRKKPATPWGYPALGRRSRKRNKYSDNLILRRRSK 274          
BLAST of CX297710 vs. ExPASy Swiss-Prot
Match: RK2_MORIN (50S ribosomal protein L2, chloroplastic OS=Morus indica GN=rpl2-A PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 2.994e-15
Identity = 36/38 (94.74%), Postives = 38/38 (100.00%), Query Frame = 1
Query:   13 APIGRKRPATPWGYPALGRRSRKRNKYSDNLILRRRTK 126
            APIGRK+PATPWGYPALGRRSRKRNKYSDNLILRRR+K
Sbjct:  237 APIGRKKPATPWGYPALGRRSRKRNKYSDNLILRRRSK 274          
BLAST of CX297710 vs. ExPASy Swiss-Prot
Match: RK2_MANES (50S ribosomal protein L2, chloroplastic OS=Manihot esculenta GN=rpl2-A PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 2.994e-15
Identity = 36/38 (94.74%), Postives = 38/38 (100.00%), Query Frame = 1
Query:   13 APIGRKRPATPWGYPALGRRSRKRNKYSDNLILRRRTK 126
            APIGRK+PATPWGYPALGRRSRKRNKYSDNLILRRR+K
Sbjct:  240 APIGRKKPATPWGYPALGRRSRKRNKYSDNLILRRRSK 277          
BLAST of CX297710 vs. ExPASy Swiss-Prot
Match: RK2_GOSHI (50S ribosomal protein L2, chloroplastic OS=Gossypium hirsutum GN=rpl2-A PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 2.994e-15
Identity = 36/38 (94.74%), Postives = 38/38 (100.00%), Query Frame = 1
Query:   13 APIGRKRPATPWGYPALGRRSRKRNKYSDNLILRRRTK 126
            APIGRK+PATPWGYPALGRRSRKRNKYSDNLILRRR+K
Sbjct:  237 APIGRKKPATPWGYPALGRRSRKRNKYSDNLILRRRSK 274          
BLAST of CX297710 vs. ExPASy Swiss-Prot
Match: RK2_CUCSA (50S ribosomal protein L2, chloroplastic OS=Cucumis sativus GN=rpl2-A PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 2.994e-15
Identity = 36/38 (94.74%), Postives = 38/38 (100.00%), Query Frame = 1
Query:   13 APIGRKRPATPWGYPALGRRSRKRNKYSDNLILRRRTK 126
            APIGRK+PATPWGYPALGRRSRKRNKYSDNLILRRR+K
Sbjct:  237 APIGRKKPATPWGYPALGRRSRKRNKYSDNLILRRRSK 274          
BLAST of CX297710 vs. ExPASy Swiss-Prot
Match: RK2_CARPA (50S ribosomal protein L2, chloroplastic OS=Carica papaya GN=rpl2-A PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 2.994e-15
Identity = 36/38 (94.74%), Postives = 38/38 (100.00%), Query Frame = 1
Query:   13 APIGRKRPATPWGYPALGRRSRKRNKYSDNLILRRRTK 126
            APIGRK+PATPWGYPALGRRSRKRNKYSDNLILRRR+K
Sbjct:  237 APIGRKKPATPWGYPALGRRSRKRNKYSDNLILRRRSK 274          
BLAST of CX297710 vs. ExPASy Swiss-Prot
Match: RK2B_POPAL (50S ribosomal protein L2-B, chloroplastic OS=Populus alba GN=rpl2-B PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 2.994e-15
Identity = 36/38 (94.74%), Postives = 38/38 (100.00%), Query Frame = 1
Query:   13 APIGRKRPATPWGYPALGRRSRKRNKYSDNLILRRRTK 126
            APIGRK+PATPWGYPALGRRSRKRNKYSDNLILRRR+K
Sbjct:  237 APIGRKKPATPWGYPALGRRSRKRNKYSDNLILRRRSK 274          
BLAST of CX297710 vs. ExPASy Swiss-Prot
Match: RK2A_POPAL (50S ribosomal protein L2-A, chloroplastic OS=Populus alba GN=rpl2-A PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 2.994e-15
Identity = 36/38 (94.74%), Postives = 38/38 (100.00%), Query Frame = 1
Query:   13 APIGRKRPATPWGYPALGRRSRKRNKYSDNLILRRRTK 126
            APIGRK+PATPWGYPALGRRSRKRNKYSDNLILRRR+K
Sbjct:  238 APIGRKKPATPWGYPALGRRSRKRNKYSDNLILRRRSK 275          
BLAST of CX297710 vs. ExPASy Swiss-Prot
Match: RK2_VITVI (50S ribosomal protein L2, chloroplastic OS=Vitis vinifera GN=rpl2-A PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 8.710e-15
Identity = 35/38 (92.11%), Postives = 37/38 (97.37%), Query Frame = 1
Query:   13 APIGRKRPATPWGYPALGRRSRKRNKYSDNLILRRRTK 126
            APIGRK+P TPWGYPALGRRSRKRNKYSDNLILRRR+K
Sbjct:  237 APIGRKKPTTPWGYPALGRRSRKRNKYSDNLILRRRSK 274          
The following BLAST results are available for this feature:
BLAST of CX297710 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 92
Match NameE-valueIdentityDescription
RK2_CITSI4.618e-16100.0050S ribosomal protein L2, chloroplastic OS=Citrus ... [more]
RK2_POPTR2.994e-1594.7450S ribosomal protein L2, chloroplastic OS=Populus... [more]
RK2_MORIN2.994e-1594.7450S ribosomal protein L2, chloroplastic OS=Morus i... [more]
RK2_MANES2.994e-1594.7450S ribosomal protein L2, chloroplastic OS=Manihot... [more]
RK2_GOSHI2.994e-1594.7450S ribosomal protein L2, chloroplastic OS=Gossypi... [more]
RK2_CUCSA2.994e-1594.7450S ribosomal protein L2, chloroplastic OS=Cucumis... [more]
RK2_CARPA2.994e-1594.7450S ribosomal protein L2, chloroplastic OS=Carica ... [more]
RK2B_POPAL2.994e-1594.7450S ribosomal protein L2-B, chloroplastic OS=Popul... [more]
RK2A_POPAL2.994e-1594.7450S ribosomal protein L2-A, chloroplastic OS=Popul... [more]
RK2_VITVI8.710e-1592.1150S ribosomal protein L2, chloroplastic OS=Vitis v... [more]

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Properties
Property NameValue
Genbank descriptionC06004D08SK RindPdig24 Citrus clementina cDNA clone C06004D08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX297710 ID=CX297710; Name=CX297710; organism=Citrus clementina; type=EST; length=186bp
GATTCGGCCGAGGCTCCGATTGGTAGAAAAAGACCCGCAACCCCTTGGGG
TTATCCTGCACTTGGAAGACGAAGTAGAAAAAGGAATAAATATAGTGATA
ATTTGATTCTTCGCCGCCGTACTAAATAGGAGAGAAAATCGAATTTTTTT
CTTCGTTTTTACAATTTACAAAAAAAAAAAAAAAAA
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